HEADER LIGASE 13-JUL-20 6XRU TITLE GTP-SPECIFIC SUCCINYL-COA SYNTHETASE COMPLEXED WITH DESULFO-COENZYME TITLE 2 A, MAGNESIUM IONS AND SUCCINATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-COA LIGASE [ADP/GDP-FORMING] SUBUNIT ALPHA, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE SUBUNIT ALPHA,SCS-ALPHA; COMPND 6 EC: 6.2.1.4,6.2.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUCCINATE--COA LIGASE [GDP-FORMING] SUBUNIT BETA, COMPND 10 MITOCHONDRIAL; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: GTP-SPECIFIC SUCCINYL-COA SYNTHETASE SUBUNIT BETA,GTPSCS, COMPND 13 SUCCINYL-COA SYNTHETASE BETA-G CHAIN,SCS-BETAG; COMPND 14 EC: 6.2.1.4; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: SUCLG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 11 ORGANISM_COMMON: PIG; SOURCE 12 ORGANISM_TAXID: 9823; SOURCE 13 GENE: SUCLG2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,M.E.FRASER REVDAT 2 18-OCT-23 6XRU 1 REMARK REVDAT 1 10-MAR-21 6XRU 0 JRNL AUTH J.HUANG,M.E.FRASER JRNL TITL SECOND DISTINCT CONFORMATION OF THE PHOSPHOHISTIDINE LOOP IN JRNL TITL 2 SUCCINYL-COA SYNTHETASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 77 357 2021 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S2059798321000334 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3885 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 125749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.110 REMARK 3 FREE R VALUE TEST SET COUNT : 7687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7600 - 4.3500 1.00 4073 429 0.1539 0.1669 REMARK 3 2 4.3500 - 3.4500 1.00 4014 432 0.1190 0.1554 REMARK 3 3 3.4500 - 3.0200 1.00 3945 458 0.1364 0.1608 REMARK 3 4 3.0200 - 2.7400 1.00 3986 426 0.1414 0.1712 REMARK 3 5 2.7400 - 2.5400 1.00 3954 454 0.1396 0.1685 REMARK 3 6 2.5400 - 2.3900 1.00 3921 423 0.1375 0.1725 REMARK 3 7 2.3900 - 2.2700 1.00 3984 442 0.1392 0.1640 REMARK 3 8 2.2700 - 2.1800 1.00 4032 351 0.1367 0.1798 REMARK 3 9 2.1800 - 2.0900 1.00 4177 210 0.1394 0.1786 REMARK 3 10 2.0900 - 2.0200 1.00 4191 203 0.1464 0.1753 REMARK 3 11 2.0200 - 1.9600 1.00 4189 194 0.1580 0.2052 REMARK 3 12 1.9600 - 1.9000 0.99 4151 222 0.1713 0.1874 REMARK 3 13 1.9000 - 1.8500 0.99 4142 202 0.1888 0.2221 REMARK 3 14 1.8500 - 1.8000 1.00 4137 190 0.1979 0.2296 REMARK 3 15 1.8000 - 1.7600 1.00 4198 220 0.2042 0.2332 REMARK 3 16 1.7600 - 1.7300 1.00 4148 200 0.2145 0.2440 REMARK 3 17 1.7300 - 1.6900 0.99 4144 204 0.2193 0.2443 REMARK 3 18 1.6900 - 1.6600 1.00 4175 219 0.2289 0.2764 REMARK 3 19 1.6600 - 1.6300 1.00 4161 187 0.2339 0.2885 REMARK 3 20 1.6300 - 1.6000 0.99 4149 208 0.2510 0.2872 REMARK 3 21 1.6000 - 1.5800 0.98 4055 209 0.2616 0.3101 REMARK 3 22 1.5800 - 1.5500 0.99 4163 212 0.2874 0.3174 REMARK 3 23 1.5500 - 1.5300 0.99 4093 201 0.3034 0.3371 REMARK 3 24 1.5300 - 1.5100 0.98 4111 196 0.3160 0.3390 REMARK 3 25 1.5100 - 1.4900 0.97 4035 200 0.3240 0.3457 REMARK 3 26 1.4900 - 1.4700 0.96 3995 193 0.3393 0.3334 REMARK 3 27 1.4700 - 1.4500 0.87 3630 183 0.3675 0.3754 REMARK 3 28 1.4500 - 1.4300 0.79 3293 181 0.3734 0.3888 REMARK 3 29 1.4300 - 1.4200 0.66 2764 127 0.3843 0.3964 REMARK 3 30 1.4200 - 1.4000 0.50 2052 111 0.3760 0.3770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) P3350, 100 MM MES PH 6.3, REMARK 280 120 MM AMMONIUM SUCCINATE PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.62300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 LYS B 394 REMARK 465 LYS B 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO4 SIN B 401 MG MG B 405 1.28 REMARK 500 HE ARG A 255 O HOH A 501 1.42 REMARK 500 HH TYR B 306 OE1 GLU B 345 1.60 REMARK 500 O HOH A 513 O HOH A 739 1.77 REMARK 500 O HOH B 741 O HOH B 852 1.94 REMARK 500 O HOH B 674 O HOH B 839 1.95 REMARK 500 O HOH B 551 O HOH B 769 1.95 REMARK 500 O HOH B 557 O HOH B 786 1.97 REMARK 500 O HOH B 771 O HOH B 772 1.98 REMARK 500 O HOH B 796 O HOH B 838 1.99 REMARK 500 O HOH B 814 O HOH B 838 1.99 REMARK 500 O HOH B 632 O HOH B 820 1.99 REMARK 500 O HOH A 503 O HOH A 674 1.99 REMARK 500 O HOH B 782 O HOH B 826 1.99 REMARK 500 O HOH A 729 O HOH A 736 2.01 REMARK 500 O HOH A 736 O HOH A 772 2.01 REMARK 500 O HOH A 633 O HOH A 658 2.02 REMARK 500 O HOH A 708 O HOH A 746 2.03 REMARK 500 O HOH A 742 O HOH B 696 2.07 REMARK 500 O HOH A 527 O HOH A 595 2.09 REMARK 500 O HOH A 805 O HOH A 834 2.10 REMARK 500 O HOH B 545 O HOH B 838 2.13 REMARK 500 O HOH B 759 O HOH B 871 2.14 REMARK 500 O HOH A 805 O HOH B 899 2.15 REMARK 500 O HOH A 512 O HOH A 804 2.18 REMARK 500 O HOH A 659 O HOH A 740 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 732 O HOH B 884 2545 2.00 REMARK 500 O HOH A 782 O HOH B 794 1554 2.07 REMARK 500 O HOH A 766 O HOH B 858 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 206 107.28 -160.98 REMARK 500 LEU B 346 158.67 174.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 835 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 836 DISTANCE = 7.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 406 O3 REMARK 620 2 HOH A 542 O 171.8 REMARK 620 3 HOH A 600 O 97.0 89.7 REMARK 620 4 HOH A 610 O 88.1 87.3 89.3 REMARK 620 5 SIN B 401 O4 90.4 83.3 171.5 95.3 REMARK 620 6 HOH B 555 O 95.4 89.2 90.5 176.5 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 826 O REMARK 620 2 HOH B 576 O 163.2 REMARK 620 3 HOH B 580 O 106.7 89.4 REMARK 620 4 HOH B 618 O 89.6 84.4 93.6 REMARK 620 5 HOH B 627 O 95.2 89.0 91.9 171.4 REMARK 620 6 HOH B 725 O 79.5 84.3 173.5 84.3 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 406 DBREF 6XRU A 2 306 UNP O19069 SUCA_PIG 42 346 DBREF 6XRU B 2 395 UNP P53590 SUCB2_PIG 40 433 SEQADV 6XRU LEU A 307 UNP O19069 EXPRESSION TAG SEQADV 6XRU VAL A 308 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 309 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 310 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 311 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 312 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 313 UNP O19069 EXPRESSION TAG SEQADV 6XRU HIS A 314 UNP O19069 EXPRESSION TAG SEQADV 6XRU MET B 1 UNP P53590 INITIATING METHIONINE SEQRES 1 A 313 SER TYR THR ALA SER ARG LYS HIS LEU TYR VAL ASP LYS SEQRES 2 A 313 ASN THR LYS VAL ILE CYS GLN GLY PHE THR GLY LYS GLN SEQRES 3 A 313 GLY THR PHE HIS SER GLN GLN ALA LEU GLU TYR GLY THR SEQRES 4 A 313 ASN LEU VAL GLY GLY THR THR PRO GLY LYS GLY GLY LYS SEQRES 5 A 313 THR HIS LEU GLY LEU PRO VAL PHE ASN THR VAL LYS GLU SEQRES 6 A 313 ALA LYS GLU GLN THR GLY ALA THR ALA SER VAL ILE TYR SEQRES 7 A 313 VAL PRO PRO PRO PHE ALA ALA ALA ALA ILE ASN GLU ALA SEQRES 8 A 313 ILE ASP ALA GLU VAL PRO LEU VAL VAL CYS ILE THR GLU SEQRES 9 A 313 GLY ILE PRO GLN GLN ASP MET VAL ARG VAL LYS HIS ARG SEQRES 10 A 313 LEU LEU ARG GLN GLY LYS THR ARG LEU ILE GLY PRO ASN SEQRES 11 A 313 CYS PRO GLY VAL ILE ASN PRO GLY GLU CYS LYS ILE GLY SEQRES 12 A 313 ILE MET PRO GLY HIS ILE HIS LYS LYS GLY ARG ILE GLY SEQRES 13 A 313 ILE VAL SER ARG SER GLY THR LEU THR TYR GLU ALA VAL SEQRES 14 A 313 HIS GLN THR THR GLN VAL GLY LEU GLY GLN SER LEU CYS SEQRES 15 A 313 VAL GLY ILE GLY GLY ASP PRO PHE ASN GLY THR ASP PHE SEQRES 16 A 313 THR ASP CYS LEU GLU ILE PHE LEU ASN ASP PRO ALA THR SEQRES 17 A 313 GLU GLY ILE ILE LEU ILE GLY GLU ILE GLY GLY ASN ALA SEQRES 18 A 313 GLU GLU ASN ALA ALA GLU PHE LEU LYS GLN HIS ASN SER SEQRES 19 A 313 GLY PRO LYS SER LYS PRO VAL VAL SER PHE ILE ALA GLY SEQRES 20 A 313 LEU THR ALA PRO PRO GLY ARG ARG MET GLY HIS ALA GLY SEQRES 21 A 313 ALA ILE ILE ALA GLY GLY LYS GLY GLY ALA LYS GLU LYS SEQRES 22 A 313 ILE THR ALA LEU GLN SER ALA GLY VAL VAL VAL SER MET SEQRES 23 A 313 SER PRO ALA GLN LEU GLY THR THR ILE TYR LYS GLU PHE SEQRES 24 A 313 GLU LYS ARG LYS MET LEU LEU VAL HIS HIS HIS HIS HIS SEQRES 25 A 313 HIS SEQRES 1 B 395 MET ASN LEU GLN GLU TYR GLN SER LYS LYS LEU MET SER SEQRES 2 B 395 ASP ASN GLY VAL LYS VAL GLN ARG PHE PHE VAL ALA ASP SEQRES 3 B 395 THR ALA ASN GLU ALA LEU GLU ALA ALA LYS ARG LEU ASN SEQRES 4 B 395 ALA LYS GLU ILE VAL LEU LYS ALA GLN ILE LEU ALA GLY SEQRES 5 B 395 GLY ARG GLY LYS GLY VAL PHE SER SER GLY LEU LYS GLY SEQRES 6 B 395 GLY VAL HIS LEU THR LYS ASP PRO GLU VAL VAL GLY GLN SEQRES 7 B 395 LEU ALA LYS GLN MET ILE GLY TYR ASN LEU ALA THR LYS SEQRES 8 B 395 GLN THR PRO LYS GLU GLY VAL LYS VAL ASN LYS VAL MET SEQRES 9 B 395 VAL ALA GLU ALA LEU ASP ILE SER ARG GLU THR TYR LEU SEQRES 10 B 395 ALA ILE LEU MET ASP ARG SER CYS ASN GLY PRO VAL LEU SEQRES 11 B 395 VAL GLY SER PRO GLN GLY GLY VAL ASP ILE GLU GLU VAL SEQRES 12 B 395 ALA ALA SER ASN PRO GLU LEU ILE PHE LYS GLU GLN ILE SEQRES 13 B 395 ASP ILE ILE GLU GLY ILE LYS ASP SER GLN ALA GLN ARG SEQRES 14 B 395 MET ALA GLU ASN LEU GLY PHE LEU GLY PRO LEU GLN ASN SEQRES 15 B 395 GLN ALA ALA ASP GLN ILE LYS LYS LEU TYR ASN LEU PHE SEQRES 16 B 395 LEU LYS ILE ASP ALA THR GLN VAL GLU VAL ASN PRO PHE SEQRES 17 B 395 GLY GLU THR PRO GLU GLY GLN VAL VAL CYS PHE ASP ALA SEQRES 18 B 395 LYS ILE ASN PHE ASP ASP ASN ALA GLU PHE ARG GLN LYS SEQRES 19 B 395 ASP ILE PHE ALA MET ASP ASP LYS SER GLU ASN GLU PRO SEQRES 20 B 395 ILE GLU ASN GLU ALA ALA LYS TYR ASP LEU LYS TYR ILE SEQRES 21 B 395 GLY LEU ASP GLY ASN ILE ALA CYS PHE VAL ASN GLY ALA SEQRES 22 B 395 GLY LEU ALA MET ALA THR CYS ASP ILE ILE PHE LEU ASN SEQRES 23 B 395 GLY GLY LYS PRO ALA ASN PHE LEU ASP LEU GLY GLY GLY SEQRES 24 B 395 VAL LYS GLU SER GLN VAL TYR GLN ALA PHE LYS LEU LEU SEQRES 25 B 395 THR ALA ASP PRO LYS VAL GLU ALA ILE LEU VAL ASN ILE SEQRES 26 B 395 PHE GLY GLY ILE VAL ASN CYS ALA ILE ILE ALA ASN GLY SEQRES 27 B 395 ILE THR LYS ALA CYS ARG GLU LEU GLU LEU LYS VAL PRO SEQRES 28 B 395 LEU VAL VAL ARG LEU GLU GLY THR ASN VAL HIS GLU ALA SEQRES 29 B 395 GLN ASN ILE LEU THR ASN SER GLY LEU PRO ILE THR SER SEQRES 30 B 395 ALA VAL ASP LEU GLU ASP ALA ALA LYS LYS ALA VAL ALA SEQRES 31 B 395 SER VAL THR LYS LYS HET DCA A 401 83 HET SIN A 402 14 HET GOL A 403 14 HET GOL A 404 14 HET EDO A 405 10 HET PO4 A 406 5 HET SIN B 401 14 HET GOL B 402 14 HET GOL B 403 13 HET EDO B 404 10 HET MG B 405 1 HET MG B 406 1 HETNAM DCA DESULFO-COENZYME A HETNAM SIN SUCCINIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 DCA C21 H36 N7 O16 P3 FORMUL 4 SIN 2(C4 H6 O4) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 PO4 O4 P 3- FORMUL 13 MG 2(MG 2+) FORMUL 15 HOH *738(H2 O) HELIX 1 AA1 SER A 2 TYR A 11 5 10 HELIX 2 AA2 GLY A 25 GLY A 39 1 15 HELIX 3 AA3 THR A 63 GLY A 72 1 10 HELIX 4 AA4 PRO A 81 ALA A 95 1 15 HELIX 5 AA5 PRO A 108 LEU A 120 1 13 HELIX 6 AA6 PRO A 147 HIS A 151 5 5 HELIX 7 AA7 SER A 162 VAL A 176 1 15 HELIX 8 AA8 ASP A 195 ASP A 206 1 12 HELIX 9 AA9 ASN A 221 ASN A 234 1 14 HELIX 10 AB1 GLY A 270 ALA A 281 1 12 HELIX 11 AB2 SER A 288 ALA A 290 5 3 HELIX 12 AB3 GLN A 291 ARG A 303 1 13 HELIX 13 AB4 GLN B 4 ASP B 14 1 11 HELIX 14 AB5 THR B 27 ASN B 39 1 13 HELIX 15 AB6 GLY B 53 GLY B 57 5 5 HELIX 16 AB7 ASP B 72 GLN B 82 1 11 HELIX 17 AB8 ASP B 139 ASN B 147 1 9 HELIX 18 AB9 PRO B 148 ILE B 151 5 4 HELIX 19 AC1 LYS B 163 LEU B 174 1 12 HELIX 20 AC2 LEU B 177 ILE B 198 1 22 HELIX 21 AC3 ASP B 227 ARG B 232 5 6 HELIX 22 AC4 GLN B 233 ALA B 238 1 6 HELIX 23 AC5 GLU B 246 TYR B 255 1 10 HELIX 24 AC6 GLY B 272 ASN B 286 1 15 HELIX 25 AC7 LYS B 301 ASP B 315 1 15 HELIX 26 AC8 ASN B 331 GLU B 345 1 15 HELIX 27 AC9 ASN B 360 SER B 371 1 12 HELIX 28 AD1 ASP B 380 SER B 391 1 12 SHEET 1 AA1 7 LYS A 53 HIS A 55 0 SHEET 2 AA1 7 LEU A 58 PHE A 61 -1 O VAL A 60 N LYS A 53 SHEET 3 AA1 7 ASN A 41 THR A 46 1 N GLY A 45 O PHE A 61 SHEET 4 AA1 7 LYS A 17 GLN A 21 1 N VAL A 18 O ASN A 41 SHEET 5 AA1 7 ALA A 75 ILE A 78 1 O VAL A 77 N GLN A 21 SHEET 6 AA1 7 LEU A 99 CYS A 102 1 O VAL A 101 N ILE A 78 SHEET 7 AA1 7 ARG A 126 ILE A 128 1 O ARG A 126 N VAL A 100 SHEET 1 AA2 7 CYS A 141 GLY A 144 0 SHEET 2 AA2 7 GLY A 134 ASN A 137 -1 N ASN A 137 O CYS A 141 SHEET 3 AA2 7 GLN A 180 GLY A 185 -1 O GLY A 185 N GLY A 134 SHEET 4 AA2 7 LYS A 153 SER A 160 1 N ILE A 158 O VAL A 184 SHEET 5 AA2 7 GLY A 211 GLU A 217 1 O GLY A 211 N GLY A 157 SHEET 6 AA2 7 VAL A 242 ALA A 247 1 O VAL A 243 N ILE A 212 SHEET 7 AA2 7 VAL A 284 VAL A 285 1 O VAL A 284 N VAL A 242 SHEET 1 AA3 4 PHE B 22 ALA B 25 0 SHEET 2 AA3 4 VAL B 103 GLU B 107 -1 O VAL B 105 N PHE B 23 SHEET 3 AA3 4 ILE B 43 ALA B 47 -1 N VAL B 44 O ALA B 106 SHEET 4 AA3 4 VAL B 67 THR B 70 -1 O HIS B 68 N LEU B 45 SHEET 1 AA4 3 VAL B 58 PHE B 59 0 SHEET 2 AA4 3 ASN B 87 ALA B 89 -1 O ALA B 89 N VAL B 58 SHEET 3 AA4 3 VAL B 98 LYS B 99 -1 O VAL B 98 N LEU B 88 SHEET 1 AA5 5 PHE B 152 GLN B 155 0 SHEET 2 AA5 5 PRO B 128 SER B 133 -1 N GLY B 132 O PHE B 152 SHEET 3 AA5 5 ARG B 113 MET B 121 -1 N ALA B 118 O VAL B 131 SHEET 4 AA5 5 ALA B 200 GLU B 210 -1 O VAL B 205 N LEU B 117 SHEET 5 AA5 5 VAL B 216 CYS B 218 -1 O VAL B 217 N GLY B 209 SHEET 1 AA6 5 PHE B 152 GLN B 155 0 SHEET 2 AA6 5 PRO B 128 SER B 133 -1 N GLY B 132 O PHE B 152 SHEET 3 AA6 5 ARG B 113 MET B 121 -1 N ALA B 118 O VAL B 131 SHEET 4 AA6 5 ALA B 200 GLU B 210 -1 O VAL B 205 N LEU B 117 SHEET 5 AA6 5 ALA B 221 PHE B 225 -1 O LYS B 222 N GLU B 204 SHEET 1 AA7 2 LYS B 258 GLY B 261 0 SHEET 2 AA7 2 ASN B 292 ASP B 295 -1 O PHE B 293 N ILE B 260 SHEET 1 AA8 4 ILE B 266 VAL B 270 0 SHEET 2 AA8 4 ALA B 320 GLY B 327 1 O ALA B 320 N ALA B 267 SHEET 3 AA8 4 LEU B 352 GLY B 358 1 O VAL B 353 N VAL B 323 SHEET 4 AA8 4 THR B 376 SER B 377 1 O THR B 376 N LEU B 352 LINK O3 PO4 A 406 MG MG B 405 1555 1555 2.00 LINK O HOH A 542 MG MG B 405 1555 1555 2.10 LINK O HOH A 600 MG MG B 405 1555 1555 2.03 LINK O HOH A 610 MG MG B 405 1555 1555 2.21 LINK O HOH A 826 MG MG B 406 1555 1555 2.03 LINK O4 SIN B 401 MG MG B 405 1555 1555 2.17 LINK MG MG B 405 O HOH B 555 1555 1555 2.09 LINK MG MG B 406 O HOH B 576 1555 1555 2.28 LINK MG MG B 406 O HOH B 580 1555 1555 1.96 LINK MG MG B 406 O HOH B 618 1555 1555 2.11 LINK MG MG B 406 O HOH B 627 1555 1555 2.09 LINK MG MG B 406 O HOH B 725 1555 1555 2.01 CISPEP 1 GLY A 129 PRO A 130 0 9.46 CISPEP 2 ASN B 206 PRO B 207 0 1.82 SITE 1 AC1 36 GLY A 22 THR A 24 GLY A 25 LYS A 26 SITE 2 AC1 36 GLN A 27 THR A 46 PRO A 48 LYS A 50 SITE 3 AC1 36 TYR A 79 VAL A 80 PRO A 81 PRO A 82 SITE 4 AC1 36 ILE A 103 THR A 104 GLU A 105 ASN A 131 SITE 5 AC1 36 CYS A 132 ILE A 145 HOH A 505 HOH A 518 SITE 6 AC1 36 HOH A 522 HOH A 525 HOH A 535 HOH A 542 SITE 7 AC1 36 HOH A 552 HOH A 555 HOH A 567 HOH A 576 SITE 8 AC1 36 HOH A 633 HOH A 639 HOH A 647 HOH A 648 SITE 9 AC1 36 HOH A 658 HOH A 716 GLY B 298 SIN B 401 SITE 1 AC2 10 ARG A 256 ALA A 265 GLY A 266 HOH A 502 SITE 2 AC2 10 HOH A 570 HOH A 582 HOH A 606 THR B 201 SITE 3 AC2 10 ASN B 224 HOH B 725 SITE 1 AC3 7 GLY A 139 HIS A 151 LYS A 152 LYS A 153 SITE 2 AC3 7 HOH A 506 HOH A 508 GLU B 74 SITE 1 AC4 3 LEU A 249 THR A 250 PHE B 284 SITE 1 AC5 6 SER A 286 MET A 287 SER A 288 GLN A 291 SITE 2 AC5 6 THR A 295 HOH A 720 SITE 1 AC6 13 SER A 162 GLY A 163 THR A 164 HIS A 259 SITE 2 AC6 13 HOH A 531 HOH A 600 HOH A 610 GLY B 272 SITE 3 AC6 13 ALA B 273 GLY B 274 SIN B 401 MG B 405 SITE 4 AC6 13 HOH B 555 SITE 1 AC7 13 ILE A 145 GLY A 163 TYR A 167 DCA A 401 SITE 2 AC7 13 PO4 A 406 HOH A 542 HOH A 610 ASN B 271 SITE 3 AC7 13 GLY B 328 ILE B 329 VAL B 330 MG B 405 SITE 4 AC7 13 HOH B 555 SITE 1 AC8 4 ASP B 122 ARG B 123 LYS B 153 HOH B 612 SITE 1 AC9 5 ASN B 29 GLY B 77 GLN B 78 HOH B 609 SITE 2 AC9 5 HOH B 620 SITE 1 AD1 6 PHE B 231 ARG B 232 GLN B 233 LYS B 234 SITE 2 AD1 6 ASP B 235 HOH B 728 SITE 1 AD2 6 PO4 A 406 HOH A 542 HOH A 600 HOH A 610 SITE 2 AD2 6 SIN B 401 HOH B 555 SITE 1 AD3 6 HOH A 826 HOH B 576 HOH B 580 HOH B 618 SITE 2 AD3 6 HOH B 627 HOH B 725 CRYST1 86.041 81.246 50.386 90.00 104.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011622 0.000000 0.003026 0.00000 SCALE2 0.000000 0.012308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020508 0.00000