data_6XS5 # _entry.id 6XS5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XS5 pdb_00006xs5 10.2210/pdb6xs5/pdb WWPDB D_1000250664 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XS5 _pdbx_database_status.recvd_initial_deposition_date 2020-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, K.-E.' 1 0000-0003-1106-1629 'Guo, Q.' 2 0000-0002-2133-5358 'Collins, B.M.' 3 0000-0002-6070-3774 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first eabg4007 _citation.page_last eabg4007 _citation.title 'De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abg4007 _citation.pdbx_database_id_PubMed 34851660 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, K.E.' 1 0000-0003-1106-1629 primary 'Guo, Q.' 2 0000-0002-2133-5358 primary 'Hill, T.A.' 3 0000-0001-9727-9930 primary 'Cui, Y.' 4 ? primary 'Kendall, A.K.' 5 0000-0002-6176-9177 primary 'Yang, Z.' 6 0000-0002-7987-0855 primary 'Hall, R.J.' 7 0000-0002-8543-0370 primary 'Healy, M.D.' 8 0000-0003-2924-9179 primary 'Sacharz, J.' 9 ? primary 'Norwood, S.J.' 10 ? primary 'Fonseka, S.' 11 0000-0002-0940-2511 primary 'Xie, B.' 12 0000-0003-2829-9254 primary 'Reid, R.C.' 13 0000-0002-0829-239X primary 'Leneva, N.' 14 0000-0001-8102-9769 primary 'Parton, R.G.' 15 0000-0002-7494-5248 primary 'Ghai, R.' 16 ? primary 'Stroud, D.A.' 17 0000-0002-2048-3383 primary 'Fairlie, D.P.' 18 0000-0002-7856-8566 primary 'Suga, H.' 19 ? primary 'Jackson, L.P.' 20 0000-0002-3705-6126 primary 'Teasdale, R.D.' 21 0000-0001-7455-5269 primary 'Passioura, T.' 22 0000-0002-6089-5067 primary 'Collins, B.M.' 23 0000-0002-6070-3774 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 100.530 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6XS5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 114.390 _cell.length_a_esd ? _cell.length_b 43.770 _cell.length_b_esd ? _cell.length_c 43.140 _cell.length_c_esd ? _cell.volume 212378.973 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vacuolar protein sorting-associated protein 29' 21636.869 1 ? ? ? ? 2 polymer syn 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG 1984.364 1 ? ? ? 'Cyclic peptide RT-D1 derived from RaPID screen' 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 5 water nat water 18.015 90 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'hVPS29,PEP11 homolog,Vesicle protein sorting 29' 2 RT-D1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPEFGTRDRMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYP EQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSF VLMDIQASTVVTYVYQLIGDDVKVERIEYKKP ; ;GSPEFGTRDRMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYP EQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSF VLMDIQASTVVTYVYQLIGDDVKVERIEYKKP ; A ? 2 'polypeptide(L)' no yes '(48V)(DTY)IIDTPLGVFLSSLKR' XYIIDTPLGVFLSSLKR B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 PHE n 1 6 GLY n 1 7 THR n 1 8 ARG n 1 9 ASP n 1 10 ARG n 1 11 MET n 1 12 LEU n 1 13 VAL n 1 14 LEU n 1 15 VAL n 1 16 LEU n 1 17 GLY n 1 18 ASP n 1 19 LEU n 1 20 HIS n 1 21 ILE n 1 22 PRO n 1 23 HIS n 1 24 ARG n 1 25 CYS n 1 26 ASN n 1 27 SER n 1 28 LEU n 1 29 PRO n 1 30 ALA n 1 31 LYS n 1 32 PHE n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 LEU n 1 37 VAL n 1 38 PRO n 1 39 GLY n 1 40 LYS n 1 41 ILE n 1 42 GLN n 1 43 HIS n 1 44 ILE n 1 45 LEU n 1 46 CYS n 1 47 THR n 1 48 GLY n 1 49 ASN n 1 50 LEU n 1 51 CYS n 1 52 THR n 1 53 LYS n 1 54 GLU n 1 55 SER n 1 56 TYR n 1 57 ASP n 1 58 TYR n 1 59 LEU n 1 60 LYS n 1 61 THR n 1 62 LEU n 1 63 ALA n 1 64 GLY n 1 65 ASP n 1 66 VAL n 1 67 HIS n 1 68 ILE n 1 69 VAL n 1 70 ARG n 1 71 GLY n 1 72 ASP n 1 73 PHE n 1 74 ASP n 1 75 GLU n 1 76 ASN n 1 77 LEU n 1 78 ASN n 1 79 TYR n 1 80 PRO n 1 81 GLU n 1 82 GLN n 1 83 LYS n 1 84 VAL n 1 85 VAL n 1 86 THR n 1 87 VAL n 1 88 GLY n 1 89 GLN n 1 90 PHE n 1 91 LYS n 1 92 ILE n 1 93 GLY n 1 94 LEU n 1 95 ILE n 1 96 HIS n 1 97 GLY n 1 98 HIS n 1 99 GLN n 1 100 VAL n 1 101 ILE n 1 102 PRO n 1 103 TRP n 1 104 GLY n 1 105 ASP n 1 106 MET n 1 107 ALA n 1 108 SER n 1 109 LEU n 1 110 ALA n 1 111 LEU n 1 112 LEU n 1 113 GLN n 1 114 ARG n 1 115 GLN n 1 116 PHE n 1 117 ASP n 1 118 VAL n 1 119 ASP n 1 120 ILE n 1 121 LEU n 1 122 ILE n 1 123 SER n 1 124 GLY n 1 125 HIS n 1 126 THR n 1 127 HIS n 1 128 LYS n 1 129 PHE n 1 130 GLU n 1 131 ALA n 1 132 PHE n 1 133 GLU n 1 134 HIS n 1 135 GLU n 1 136 ASN n 1 137 LYS n 1 138 PHE n 1 139 TYR n 1 140 ILE n 1 141 ASN n 1 142 PRO n 1 143 GLY n 1 144 SER n 1 145 ALA n 1 146 THR n 1 147 GLY n 1 148 ALA n 1 149 TYR n 1 150 ASN n 1 151 ALA n 1 152 LEU n 1 153 GLU n 1 154 THR n 1 155 ASN n 1 156 ILE n 1 157 ILE n 1 158 PRO n 1 159 SER n 1 160 PHE n 1 161 VAL n 1 162 LEU n 1 163 MET n 1 164 ASP n 1 165 ILE n 1 166 GLN n 1 167 ALA n 1 168 SER n 1 169 THR n 1 170 VAL n 1 171 VAL n 1 172 THR n 1 173 TYR n 1 174 VAL n 1 175 TYR n 1 176 GLN n 1 177 LEU n 1 178 ILE n 1 179 GLY n 1 180 ASP n 1 181 ASP n 1 182 VAL n 1 183 LYS n 1 184 VAL n 1 185 GLU n 1 186 ARG n 1 187 ILE n 1 188 GLU n 1 189 TYR n 1 190 LYS n 1 191 LYS n 1 192 PRO n 2 1 48V n 2 2 DTY n 2 3 ILE n 2 4 ILE n 2 5 ASP n 2 6 THR n 2 7 PRO n 2 8 LEU n 2 9 GLY n 2 10 VAL n 2 11 PHE n 2 12 LEU n 2 13 SER n 2 14 SER n 2 15 LEU n 2 16 LYS n 2 17 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 192 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VPS29, DC15, DC7, MDS007' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP VPS29_HUMAN Q9UBQ0 ? 1 ;MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQF KIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTV VTYVYQLIGDDVKVERIEYKKP ; 1 2 PDB 6XS5 6XS5 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6XS5 A 11 ? 192 ? Q9UBQ0 1 ? 182 ? 1 182 2 2 6XS5 B 1 ? 17 ? 6XS5 0 ? 16 ? 0 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6XS5 GLY A 1 ? UNP Q9UBQ0 ? ? 'expression tag' -9 1 1 6XS5 SER A 2 ? UNP Q9UBQ0 ? ? 'expression tag' -8 2 1 6XS5 PRO A 3 ? UNP Q9UBQ0 ? ? 'expression tag' -7 3 1 6XS5 GLU A 4 ? UNP Q9UBQ0 ? ? 'expression tag' -6 4 1 6XS5 PHE A 5 ? UNP Q9UBQ0 ? ? 'expression tag' -5 5 1 6XS5 GLY A 6 ? UNP Q9UBQ0 ? ? 'expression tag' -4 6 1 6XS5 THR A 7 ? UNP Q9UBQ0 ? ? 'expression tag' -3 7 1 6XS5 ARG A 8 ? UNP Q9UBQ0 ? ? 'expression tag' -2 8 1 6XS5 ASP A 9 ? UNP Q9UBQ0 ? ? 'expression tag' -1 9 1 6XS5 ARG A 10 ? UNP Q9UBQ0 ? ? 'expression tag' 0 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 48V peptide-like . '{[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetic acid' ? 'C5 H10 N2 O3 S' 178.209 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6XS5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '3.5 M Sodium Formate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-09-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.953729 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.953729 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate 26.373 _reflns.entry_id 6XS5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.01 _reflns.d_resolution_low 42.41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14169 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.900 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.083 _reflns.pdbx_Rpim_I_all 0.032 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.010 _reflns_shell.d_res_low 2.060 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1030 _reflns_shell.percent_possible_all 98.800 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.585 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.632 _reflns_shell.pdbx_Rpim_I_all 0.235 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.917 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 32.3112114153 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6XS5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.01 _refine.ls_d_res_low 42.41 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14158 _refine.ls_number_reflns_R_free 757 _refine.ls_number_reflns_R_work 13401 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8378111558 _refine.ls_percent_reflns_R_free 5.34680039554 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.192184947795 _refine.ls_R_factor_R_free 0.225310601564 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.190256962422 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37769675716 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1W24 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.274220866 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.205837110947 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 42.41 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1695 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1590 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00719178480832 ? 1662 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.20977216899 ? 2246 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0813764045974 ? 257 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00621700268059 ? 285 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.8464929628 ? 622 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.01 2.1644 . . 136 2662 99.4314143568 . . . 0.286002126803 . 0.222512726874 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1644 2.3822 . . 151 2644 99.9642346209 . . . 0.2385689486 . 0.199827571587 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3822 2.7269 . . 133 2701 99.9647266314 . . . 0.251466520969 . 0.216789688966 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7269 3.4353 . . 171 2660 99.9646892655 . . . 0.263792047182 . 0.203731923871 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4353 42.41 . . 166 2734 99.8622589532 . . . 0.181544978704 . 0.164562457775 . . . . . . . . . . . # _struct.entry_id 6XS5 _struct.title 'Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XS5 _struct_keywords.text 'Vps29, Retromer, Endosome, Protein transport, cyclic peptide, inhibitor, PROTEIN TRANSPORT-INHIBITOR complex' _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 29 ? LEU A 36 ? PRO A 19 LEU A 26 1 ? 8 HELX_P HELX_P2 AA2 THR A 52 ? ALA A 63 ? THR A 42 ALA A 53 1 ? 12 HELX_P HELX_P3 AA3 ASP A 105 ? ASP A 117 ? ASP A 95 ASP A 107 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 48V 1 C09 ? ? ? 1_555 B DTY 2 N ? ? B 48V 0 B DTY 1 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale2 covale one ? B 48V 1 N01 ? ? ? 1_555 B ARG 17 C ? ? B 48V 0 B ARG 16 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale3 covale both ? B DTY 2 C ? ? ? 1_555 B ILE 3 N ? ? B DTY 1 B ILE 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 21 A . ? ILE 11 A PRO 22 A ? PRO 12 A 1 5.05 2 LEU 50 A . ? LEU 40 A CYS 51 A ? CYS 41 A 1 6.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 66 ? ILE A 68 ? VAL A 56 ILE A 58 AA1 2 HIS A 43 ? CYS A 46 ? HIS A 33 CYS A 36 AA1 3 ARG A 10 ? LEU A 16 ? ARG A 0 LEU A 6 AA1 4 SER A 159 ? GLN A 166 ? SER A 149 GLN A 156 AA1 5 THR A 169 ? ILE A 178 ? THR A 159 ILE A 168 AA1 6 ASP A 181 ? LYS A 190 ? ASP A 171 LYS A 180 AA1 7 GLY B 9 ? SER B 13 ? GLY B 8 SER B 12 AA1 8 ILE B 3 ? THR B 6 ? ILE B 2 THR B 5 AA2 1 GLN A 82 ? VAL A 87 ? GLN A 72 VAL A 77 AA2 2 PHE A 90 ? ILE A 95 ? PHE A 80 ILE A 85 AA2 3 ILE A 120 ? SER A 123 ? ILE A 110 SER A 113 AA2 4 LYS A 137 ? ASN A 141 ? LYS A 127 ASN A 131 AA2 5 GLU A 130 ? HIS A 134 ? GLU A 120 HIS A 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O HIS A 67 ? O HIS A 57 N CYS A 46 ? N CYS A 36 AA1 2 3 O LEU A 45 ? O LEU A 35 N LEU A 14 ? N LEU A 4 AA1 3 4 N VAL A 13 ? N VAL A 3 O MET A 163 ? O MET A 153 AA1 4 5 N LEU A 162 ? N LEU A 152 O TYR A 173 ? O TYR A 163 AA1 5 6 N GLN A 176 ? N GLN A 166 O LYS A 183 ? O LYS A 173 AA1 6 7 N VAL A 184 ? N VAL A 174 O LEU B 12 ? O LEU B 11 AA1 7 8 O PHE B 11 ? O PHE B 10 N ILE B 4 ? N ILE B 3 AA2 1 2 N VAL A 85 ? N VAL A 75 O ILE A 92 ? O ILE A 82 AA2 2 3 N GLY A 93 ? N GLY A 83 O ILE A 120 ? O ILE A 110 AA2 3 4 N LEU A 121 ? N LEU A 111 O ILE A 140 ? O ILE A 130 AA2 4 5 O ASN A 141 ? O ASN A 131 N GLU A 130 ? N GLU A 120 # _atom_sites.entry_id 6XS5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008742 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001625 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022847 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023577 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -9 ? ? ? A . n A 1 2 SER 2 -8 ? ? ? A . n A 1 3 PRO 3 -7 ? ? ? A . n A 1 4 GLU 4 -6 ? ? ? A . n A 1 5 PHE 5 -5 ? ? ? A . n A 1 6 GLY 6 -4 ? ? ? A . n A 1 7 THR 7 -3 ? ? ? A . n A 1 8 ARG 8 -2 ? ? ? A . n A 1 9 ASP 9 -1 -1 ASP ASP A . n A 1 10 ARG 10 0 0 ARG ARG A . n A 1 11 MET 11 1 1 MET MET A . n A 1 12 LEU 12 2 2 LEU LEU A . n A 1 13 VAL 13 3 3 VAL VAL A . n A 1 14 LEU 14 4 4 LEU LEU A . n A 1 15 VAL 15 5 5 VAL VAL A . n A 1 16 LEU 16 6 6 LEU LEU A . n A 1 17 GLY 17 7 7 GLY GLY A . n A 1 18 ASP 18 8 8 ASP ASP A . n A 1 19 LEU 19 9 9 LEU LEU A . n A 1 20 HIS 20 10 10 HIS HIS A . n A 1 21 ILE 21 11 11 ILE ILE A . n A 1 22 PRO 22 12 12 PRO PRO A . n A 1 23 HIS 23 13 13 HIS HIS A . n A 1 24 ARG 24 14 14 ARG ARG A . n A 1 25 CYS 25 15 15 CYS CYS A . n A 1 26 ASN 26 16 16 ASN ASN A . n A 1 27 SER 27 17 17 SER SER A . n A 1 28 LEU 28 18 18 LEU LEU A . n A 1 29 PRO 29 19 19 PRO PRO A . n A 1 30 ALA 30 20 20 ALA ALA A . n A 1 31 LYS 31 21 21 LYS LYS A . n A 1 32 PHE 32 22 22 PHE PHE A . n A 1 33 LYS 33 23 23 LYS LYS A . n A 1 34 LYS 34 24 24 LYS LYS A . n A 1 35 LEU 35 25 25 LEU LEU A . n A 1 36 LEU 36 26 26 LEU LEU A . n A 1 37 VAL 37 27 27 VAL VAL A . n A 1 38 PRO 38 28 28 PRO PRO A . n A 1 39 GLY 39 29 29 GLY GLY A . n A 1 40 LYS 40 30 30 LYS LYS A . n A 1 41 ILE 41 31 31 ILE ILE A . n A 1 42 GLN 42 32 32 GLN GLN A . n A 1 43 HIS 43 33 33 HIS HIS A . n A 1 44 ILE 44 34 34 ILE ILE A . n A 1 45 LEU 45 35 35 LEU LEU A . n A 1 46 CYS 46 36 36 CYS CYS A . n A 1 47 THR 47 37 37 THR THR A . n A 1 48 GLY 48 38 38 GLY GLY A . n A 1 49 ASN 49 39 39 ASN ASN A . n A 1 50 LEU 50 40 40 LEU LEU A . n A 1 51 CYS 51 41 41 CYS CYS A . n A 1 52 THR 52 42 42 THR THR A . n A 1 53 LYS 53 43 43 LYS LYS A . n A 1 54 GLU 54 44 44 GLU GLU A . n A 1 55 SER 55 45 45 SER SER A . n A 1 56 TYR 56 46 46 TYR TYR A . n A 1 57 ASP 57 47 47 ASP ASP A . n A 1 58 TYR 58 48 48 TYR TYR A . n A 1 59 LEU 59 49 49 LEU LEU A . n A 1 60 LYS 60 50 50 LYS LYS A . n A 1 61 THR 61 51 51 THR THR A . n A 1 62 LEU 62 52 52 LEU LEU A . n A 1 63 ALA 63 53 53 ALA ALA A . n A 1 64 GLY 64 54 54 GLY GLY A . n A 1 65 ASP 65 55 55 ASP ASP A . n A 1 66 VAL 66 56 56 VAL VAL A . n A 1 67 HIS 67 57 57 HIS HIS A . n A 1 68 ILE 68 58 58 ILE ILE A . n A 1 69 VAL 69 59 59 VAL VAL A . n A 1 70 ARG 70 60 60 ARG ARG A . n A 1 71 GLY 71 61 61 GLY GLY A . n A 1 72 ASP 72 62 62 ASP ASP A . n A 1 73 PHE 73 63 63 PHE PHE A . n A 1 74 ASP 74 64 64 ASP ASP A . n A 1 75 GLU 75 65 65 GLU GLU A . n A 1 76 ASN 76 66 66 ASN ASN A . n A 1 77 LEU 77 67 67 LEU LEU A . n A 1 78 ASN 78 68 68 ASN ASN A . n A 1 79 TYR 79 69 69 TYR TYR A . n A 1 80 PRO 80 70 70 PRO PRO A . n A 1 81 GLU 81 71 71 GLU GLU A . n A 1 82 GLN 82 72 72 GLN GLN A . n A 1 83 LYS 83 73 73 LYS LYS A . n A 1 84 VAL 84 74 74 VAL VAL A . n A 1 85 VAL 85 75 75 VAL VAL A . n A 1 86 THR 86 76 76 THR THR A . n A 1 87 VAL 87 77 77 VAL VAL A . n A 1 88 GLY 88 78 78 GLY GLY A . n A 1 89 GLN 89 79 79 GLN GLN A . n A 1 90 PHE 90 80 80 PHE PHE A . n A 1 91 LYS 91 81 81 LYS LYS A . n A 1 92 ILE 92 82 82 ILE ILE A . n A 1 93 GLY 93 83 83 GLY GLY A . n A 1 94 LEU 94 84 84 LEU LEU A . n A 1 95 ILE 95 85 85 ILE ILE A . n A 1 96 HIS 96 86 86 HIS HIS A . n A 1 97 GLY 97 87 87 GLY GLY A . n A 1 98 HIS 98 88 88 HIS HIS A . n A 1 99 GLN 99 89 89 GLN GLN A . n A 1 100 VAL 100 90 90 VAL VAL A . n A 1 101 ILE 101 91 91 ILE ILE A . n A 1 102 PRO 102 92 92 PRO PRO A . n A 1 103 TRP 103 93 ? ? ? A . n A 1 104 GLY 104 94 94 GLY GLY A . n A 1 105 ASP 105 95 95 ASP ASP A . n A 1 106 MET 106 96 96 MET MET A . n A 1 107 ALA 107 97 97 ALA ALA A . n A 1 108 SER 108 98 98 SER SER A . n A 1 109 LEU 109 99 99 LEU LEU A . n A 1 110 ALA 110 100 100 ALA ALA A . n A 1 111 LEU 111 101 101 LEU LEU A . n A 1 112 LEU 112 102 102 LEU LEU A . n A 1 113 GLN 113 103 103 GLN GLN A . n A 1 114 ARG 114 104 104 ARG ARG A . n A 1 115 GLN 115 105 105 GLN GLN A . n A 1 116 PHE 116 106 106 PHE PHE A . n A 1 117 ASP 117 107 107 ASP ASP A . n A 1 118 VAL 118 108 108 VAL VAL A . n A 1 119 ASP 119 109 109 ASP ASP A . n A 1 120 ILE 120 110 110 ILE ILE A . n A 1 121 LEU 121 111 111 LEU LEU A . n A 1 122 ILE 122 112 112 ILE ILE A . n A 1 123 SER 123 113 113 SER SER A . n A 1 124 GLY 124 114 114 GLY GLY A . n A 1 125 HIS 125 115 115 HIS HIS A . n A 1 126 THR 126 116 116 THR THR A . n A 1 127 HIS 127 117 117 HIS HIS A . n A 1 128 LYS 128 118 118 LYS LYS A . n A 1 129 PHE 129 119 119 PHE PHE A . n A 1 130 GLU 130 120 120 GLU GLU A . n A 1 131 ALA 131 121 121 ALA ALA A . n A 1 132 PHE 132 122 122 PHE PHE A . n A 1 133 GLU 133 123 123 GLU GLU A . n A 1 134 HIS 134 124 124 HIS HIS A . n A 1 135 GLU 135 125 125 GLU GLU A . n A 1 136 ASN 136 126 126 ASN ASN A . n A 1 137 LYS 137 127 127 LYS LYS A . n A 1 138 PHE 138 128 128 PHE PHE A . n A 1 139 TYR 139 129 129 TYR TYR A . n A 1 140 ILE 140 130 130 ILE ILE A . n A 1 141 ASN 141 131 131 ASN ASN A . n A 1 142 PRO 142 132 132 PRO PRO A . n A 1 143 GLY 143 133 133 GLY GLY A . n A 1 144 SER 144 134 134 SER SER A . n A 1 145 ALA 145 135 135 ALA ALA A . n A 1 146 THR 146 136 136 THR THR A . n A 1 147 GLY 147 137 137 GLY GLY A . n A 1 148 ALA 148 138 138 ALA ALA A . n A 1 149 TYR 149 139 139 TYR TYR A . n A 1 150 ASN 150 140 140 ASN ASN A . n A 1 151 ALA 151 141 141 ALA ALA A . n A 1 152 LEU 152 142 142 LEU LEU A . n A 1 153 GLU 153 143 143 GLU GLU A . n A 1 154 THR 154 144 144 THR THR A . n A 1 155 ASN 155 145 145 ASN ASN A . n A 1 156 ILE 156 146 146 ILE ILE A . n A 1 157 ILE 157 147 147 ILE ILE A . n A 1 158 PRO 158 148 148 PRO PRO A . n A 1 159 SER 159 149 149 SER SER A . n A 1 160 PHE 160 150 150 PHE PHE A . n A 1 161 VAL 161 151 151 VAL VAL A . n A 1 162 LEU 162 152 152 LEU LEU A . n A 1 163 MET 163 153 153 MET MET A . n A 1 164 ASP 164 154 154 ASP ASP A . n A 1 165 ILE 165 155 155 ILE ILE A . n A 1 166 GLN 166 156 156 GLN GLN A . n A 1 167 ALA 167 157 157 ALA ALA A . n A 1 168 SER 168 158 158 SER SER A . n A 1 169 THR 169 159 159 THR THR A . n A 1 170 VAL 170 160 160 VAL VAL A . n A 1 171 VAL 171 161 161 VAL VAL A . n A 1 172 THR 172 162 162 THR THR A . n A 1 173 TYR 173 163 163 TYR TYR A . n A 1 174 VAL 174 164 164 VAL VAL A . n A 1 175 TYR 175 165 165 TYR TYR A . n A 1 176 GLN 176 166 166 GLN GLN A . n A 1 177 LEU 177 167 167 LEU LEU A . n A 1 178 ILE 178 168 168 ILE ILE A . n A 1 179 GLY 179 169 169 GLY GLY A . n A 1 180 ASP 180 170 170 ASP ASP A . n A 1 181 ASP 181 171 171 ASP ASP A . n A 1 182 VAL 182 172 172 VAL VAL A . n A 1 183 LYS 183 173 173 LYS LYS A . n A 1 184 VAL 184 174 174 VAL VAL A . n A 1 185 GLU 185 175 175 GLU GLU A . n A 1 186 ARG 186 176 176 ARG ARG A . n A 1 187 ILE 187 177 177 ILE ILE A . n A 1 188 GLU 188 178 178 GLU GLU A . n A 1 189 TYR 189 179 179 TYR TYR A . n A 1 190 LYS 190 180 180 LYS LYS A . n A 1 191 LYS 191 181 181 LYS LYS A . n A 1 192 PRO 192 182 182 PRO PRO A . n B 2 1 48V 1 0 0 48V 48V B . n B 2 2 DTY 2 1 1 DTY DTY B . n B 2 3 ILE 3 2 2 ILE ILE B . n B 2 4 ILE 4 3 3 ILE ILE B . n B 2 5 ASP 5 4 4 ASP ASP B . n B 2 6 THR 6 5 5 THR THR B . n B 2 7 PRO 7 6 6 PRO PRO B . n B 2 8 LEU 8 7 7 LEU LEU B . n B 2 9 GLY 9 8 8 GLY GLY B . n B 2 10 VAL 10 9 9 VAL VAL B . n B 2 11 PHE 11 10 10 PHE PHE B . n B 2 12 LEU 12 11 11 LEU LEU B . n B 2 13 SER 13 12 12 SER SER B . n B 2 14 SER 14 13 13 SER SER B . n B 2 15 LEU 15 14 14 LEU LEU B . n B 2 16 LYS 16 15 15 LYS LYS B . n B 2 17 ARG 17 16 16 ARG ARG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 201 1 GOL GOL A . D 3 GOL 1 202 2 GOL GOL A . E 4 FMT 1 203 1 FMT FMT A . F 5 HOH 1 301 5 HOH HOH A . F 5 HOH 2 302 86 HOH HOH A . F 5 HOH 3 303 26 HOH HOH A . F 5 HOH 4 304 69 HOH HOH A . F 5 HOH 5 305 56 HOH HOH A . F 5 HOH 6 306 57 HOH HOH A . F 5 HOH 7 307 24 HOH HOH A . F 5 HOH 8 308 4 HOH HOH A . F 5 HOH 9 309 16 HOH HOH A . F 5 HOH 10 310 61 HOH HOH A . F 5 HOH 11 311 32 HOH HOH A . F 5 HOH 12 312 71 HOH HOH A . F 5 HOH 13 313 75 HOH HOH A . F 5 HOH 14 314 60 HOH HOH A . F 5 HOH 15 315 65 HOH HOH A . F 5 HOH 16 316 8 HOH HOH A . F 5 HOH 17 317 66 HOH HOH A . F 5 HOH 18 318 87 HOH HOH A . F 5 HOH 19 319 44 HOH HOH A . F 5 HOH 20 320 11 HOH HOH A . F 5 HOH 21 321 10 HOH HOH A . F 5 HOH 22 322 19 HOH HOH A . F 5 HOH 23 323 9 HOH HOH A . F 5 HOH 24 324 55 HOH HOH A . F 5 HOH 25 325 13 HOH HOH A . F 5 HOH 26 326 37 HOH HOH A . F 5 HOH 27 327 72 HOH HOH A . F 5 HOH 28 328 77 HOH HOH A . F 5 HOH 29 329 15 HOH HOH A . F 5 HOH 30 330 58 HOH HOH A . F 5 HOH 31 331 3 HOH HOH A . F 5 HOH 32 332 2 HOH HOH A . F 5 HOH 33 333 17 HOH HOH A . F 5 HOH 34 334 25 HOH HOH A . F 5 HOH 35 335 31 HOH HOH A . F 5 HOH 36 336 1 HOH HOH A . F 5 HOH 37 337 70 HOH HOH A . F 5 HOH 38 338 6 HOH HOH A . F 5 HOH 39 339 14 HOH HOH A . F 5 HOH 40 340 51 HOH HOH A . F 5 HOH 41 341 84 HOH HOH A . F 5 HOH 42 342 54 HOH HOH A . F 5 HOH 43 343 39 HOH HOH A . F 5 HOH 44 344 27 HOH HOH A . F 5 HOH 45 345 18 HOH HOH A . F 5 HOH 46 346 85 HOH HOH A . F 5 HOH 47 347 28 HOH HOH A . F 5 HOH 48 348 43 HOH HOH A . F 5 HOH 49 349 81 HOH HOH A . F 5 HOH 50 350 53 HOH HOH A . F 5 HOH 51 351 78 HOH HOH A . F 5 HOH 52 352 41 HOH HOH A . F 5 HOH 53 353 36 HOH HOH A . F 5 HOH 54 354 48 HOH HOH A . F 5 HOH 55 355 12 HOH HOH A . F 5 HOH 56 356 50 HOH HOH A . F 5 HOH 57 357 22 HOH HOH A . F 5 HOH 58 358 90 HOH HOH A . F 5 HOH 59 359 33 HOH HOH A . F 5 HOH 60 360 88 HOH HOH A . F 5 HOH 61 361 73 HOH HOH A . F 5 HOH 62 362 45 HOH HOH A . F 5 HOH 63 363 52 HOH HOH A . F 5 HOH 64 364 30 HOH HOH A . F 5 HOH 65 365 59 HOH HOH A . F 5 HOH 66 366 29 HOH HOH A . F 5 HOH 67 367 46 HOH HOH A . F 5 HOH 68 368 68 HOH HOH A . F 5 HOH 69 369 80 HOH HOH A . F 5 HOH 70 370 76 HOH HOH A . F 5 HOH 71 371 42 HOH HOH A . F 5 HOH 72 372 62 HOH HOH A . F 5 HOH 73 373 47 HOH HOH A . F 5 HOH 74 374 79 HOH HOH A . F 5 HOH 75 375 64 HOH HOH A . F 5 HOH 76 376 67 HOH HOH A . F 5 HOH 77 377 82 HOH HOH A . F 5 HOH 78 378 63 HOH HOH A . F 5 HOH 79 379 89 HOH HOH A . F 5 HOH 80 380 74 HOH HOH A . G 5 HOH 1 101 38 HOH HOH B . G 5 HOH 2 102 34 HOH HOH B . G 5 HOH 3 103 49 HOH HOH B . G 5 HOH 4 104 23 HOH HOH B . G 5 HOH 5 105 35 HOH HOH B . G 5 HOH 6 106 91 HOH HOH B . G 5 HOH 7 107 21 HOH HOH B . G 5 HOH 8 108 83 HOH HOH B . G 5 HOH 9 109 20 HOH HOH B . G 5 HOH 10 110 40 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1820 ? 1 MORE -11 ? 1 'SSA (A^2)' 9700 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-14 2 'Structure model' 1 1 2021-12-15 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_ISSN' 3 2 'Structure model' '_citation.journal_volume' 4 2 'Structure model' '_citation.page_first' 5 2 'Structure model' '_citation.page_last' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_database_2.pdbx_DOI' 11 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # _pdbx_phasing_MR.entry_id 6XS5 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.010 _pdbx_phasing_MR.d_res_low_rotation 42.410 _pdbx_phasing_MR.d_res_high_translation 2.010 _pdbx_phasing_MR.d_res_low_translation 42.410 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.2 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6XS5 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 146 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 146 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 146 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.84 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation 17.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 115 ? ? 71.45 -8.96 2 1 ASN A 140 ? ? -127.67 -169.69 3 1 LEU A 142 ? ? 55.30 18.60 4 1 GLU A 143 ? ? -39.68 158.45 5 1 ASN A 145 ? ? 90.36 -56.40 6 1 ILE A 146 ? ? 55.42 77.91 7 1 ALA A 157 ? ? 51.44 -122.85 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A HIS 13 ? CG ? A HIS 23 CG 2 1 Y 0 A HIS 13 ? ND1 ? A HIS 23 ND1 3 1 Y 0 A HIS 13 ? CD2 ? A HIS 23 CD2 4 1 Y 0 A HIS 13 ? CE1 ? A HIS 23 CE1 5 1 Y 0 A HIS 13 ? NE2 ? A HIS 23 NE2 6 1 Y 0 A LYS 30 ? CD ? A LYS 40 CD 7 1 Y 0 A LYS 30 ? CE ? A LYS 40 CE 8 1 Y 0 A LYS 30 ? NZ ? A LYS 40 NZ 9 1 Y 0 A GLU 44 ? CG ? A GLU 54 CG 10 1 Y 0 A GLU 44 ? CD ? A GLU 54 CD 11 1 Y 0 A GLU 44 ? OE1 ? A GLU 54 OE1 12 1 Y 0 A GLU 44 ? OE2 ? A GLU 54 OE2 13 1 Y 0 A MET 96 ? CG ? A MET 106 CG 14 1 Y 0 A MET 96 ? SD ? A MET 106 SD 15 1 Y 0 A MET 96 ? CE ? A MET 106 CE 16 1 Y 0 A LYS 118 ? CG ? A LYS 128 CG 17 1 Y 0 A LYS 118 ? CD ? A LYS 128 CD 18 1 Y 0 A LYS 118 ? CE ? A LYS 128 CE 19 1 Y 0 A LYS 118 ? NZ ? A LYS 128 NZ 20 1 Y 0 A LEU 142 ? CG ? A LEU 152 CG 21 1 Y 0 A LEU 142 ? CD1 ? A LEU 152 CD1 22 1 Y 0 A LEU 142 ? CD2 ? A LEU 152 CD2 23 1 Y 0 A GLU 143 ? CG ? A GLU 153 CG 24 1 Y 0 A GLU 143 ? CD ? A GLU 153 CD 25 1 Y 0 A GLU 143 ? OE1 ? A GLU 153 OE1 26 1 Y 0 A GLU 143 ? OE2 ? A GLU 153 OE2 27 1 Y 0 A GLN 156 ? CG ? A GLN 166 CG 28 1 Y 0 A GLN 156 ? CD ? A GLN 166 CD 29 1 Y 0 A GLN 156 ? OE1 ? A GLN 166 OE1 30 1 Y 0 A GLN 156 ? NE2 ? A GLN 166 NE2 31 1 Y 0 A ASP 170 ? CG ? A ASP 180 CG 32 1 Y 0 A ASP 170 ? OD1 ? A ASP 180 OD1 33 1 Y 0 A ASP 170 ? OD2 ? A ASP 180 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -9 ? A GLY 1 2 1 Y 1 A SER -8 ? A SER 2 3 1 Y 1 A PRO -7 ? A PRO 3 4 1 Y 1 A GLU -6 ? A GLU 4 5 1 Y 1 A PHE -5 ? A PHE 5 6 1 Y 1 A GLY -4 ? A GLY 6 7 1 Y 1 A THR -3 ? A THR 7 8 1 Y 1 A ARG -2 ? A ARG 8 9 1 Y 1 A TRP 93 ? A TRP 103 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 48V O10 O N N 1 48V N01 N N N 2 48V C02 C N R 3 48V C03 C N N 4 48V O04 O N N 5 48V N05 N N N 6 48V C06 C N N 7 48V S07 S N N 8 48V C08 C N N 9 48V C09 C N N 10 48V O1 O N N 11 48V H1 H N N 12 48V H2 H N N 13 48V H4 H N N 14 48V H5 H N N 15 48V H6 H N N 16 48V H7 H N N 17 48V H8 H N N 18 48V H9 H N N 19 48V H10 H N N 20 48V H11 H N N 21 ALA N N N N 22 ALA CA C N S 23 ALA C C N N 24 ALA O O N N 25 ALA CB C N N 26 ALA OXT O N N 27 ALA H H N N 28 ALA H2 H N N 29 ALA HA H N N 30 ALA HB1 H N N 31 ALA HB2 H N N 32 ALA HB3 H N N 33 ALA HXT H N N 34 ARG N N N N 35 ARG CA C N S 36 ARG C C N N 37 ARG O O N N 38 ARG CB C N N 39 ARG CG C N N 40 ARG CD C N N 41 ARG NE N N N 42 ARG CZ C N N 43 ARG NH1 N N N 44 ARG NH2 N N N 45 ARG OXT O N N 46 ARG H H N N 47 ARG H2 H N N 48 ARG HA H N N 49 ARG HB2 H N N 50 ARG HB3 H N N 51 ARG HG2 H N N 52 ARG HG3 H N N 53 ARG HD2 H N N 54 ARG HD3 H N N 55 ARG HE H N N 56 ARG HH11 H N N 57 ARG HH12 H N N 58 ARG HH21 H N N 59 ARG HH22 H N N 60 ARG HXT H N N 61 ASN N N N N 62 ASN CA C N S 63 ASN C C N N 64 ASN O O N N 65 ASN CB C N N 66 ASN CG C N N 67 ASN OD1 O N N 68 ASN ND2 N N N 69 ASN OXT O N N 70 ASN H H N N 71 ASN H2 H N N 72 ASN HA H N N 73 ASN HB2 H N N 74 ASN HB3 H N N 75 ASN HD21 H N N 76 ASN HD22 H N N 77 ASN HXT H N N 78 ASP N N N N 79 ASP CA C N S 80 ASP C C N N 81 ASP O O N N 82 ASP CB C N N 83 ASP CG C N N 84 ASP OD1 O N N 85 ASP OD2 O N N 86 ASP OXT O N N 87 ASP H H N N 88 ASP H2 H N N 89 ASP HA H N N 90 ASP HB2 H N N 91 ASP HB3 H N N 92 ASP HD2 H N N 93 ASP HXT H N N 94 CYS N N N N 95 CYS CA C N R 96 CYS C C N N 97 CYS O O N N 98 CYS CB C N N 99 CYS SG S N N 100 CYS OXT O N N 101 CYS H H N N 102 CYS H2 H N N 103 CYS HA H N N 104 CYS HB2 H N N 105 CYS HB3 H N N 106 CYS HG H N N 107 CYS HXT H N N 108 DTY N N N N 109 DTY CA C N R 110 DTY C C N N 111 DTY O O N N 112 DTY CB C N N 113 DTY CG C Y N 114 DTY CD1 C Y N 115 DTY CD2 C Y N 116 DTY CE1 C Y N 117 DTY CE2 C Y N 118 DTY CZ C Y N 119 DTY OH O N N 120 DTY OXT O N N 121 DTY H H N N 122 DTY H2 H N N 123 DTY HA H N N 124 DTY HB2 H N N 125 DTY HB3 H N N 126 DTY HD1 H N N 127 DTY HD2 H N N 128 DTY HE1 H N N 129 DTY HE2 H N N 130 DTY HH H N N 131 DTY HXT H N N 132 FMT C C N N 133 FMT O1 O N N 134 FMT O2 O N N 135 FMT H H N N 136 FMT HO2 H N N 137 GLN N N N N 138 GLN CA C N S 139 GLN C C N N 140 GLN O O N N 141 GLN CB C N N 142 GLN CG C N N 143 GLN CD C N N 144 GLN OE1 O N N 145 GLN NE2 N N N 146 GLN OXT O N N 147 GLN H H N N 148 GLN H2 H N N 149 GLN HA H N N 150 GLN HB2 H N N 151 GLN HB3 H N N 152 GLN HG2 H N N 153 GLN HG3 H N N 154 GLN HE21 H N N 155 GLN HE22 H N N 156 GLN HXT H N N 157 GLU N N N N 158 GLU CA C N S 159 GLU C C N N 160 GLU O O N N 161 GLU CB C N N 162 GLU CG C N N 163 GLU CD C N N 164 GLU OE1 O N N 165 GLU OE2 O N N 166 GLU OXT O N N 167 GLU H H N N 168 GLU H2 H N N 169 GLU HA H N N 170 GLU HB2 H N N 171 GLU HB3 H N N 172 GLU HG2 H N N 173 GLU HG3 H N N 174 GLU HE2 H N N 175 GLU HXT H N N 176 GLY N N N N 177 GLY CA C N N 178 GLY C C N N 179 GLY O O N N 180 GLY OXT O N N 181 GLY H H N N 182 GLY H2 H N N 183 GLY HA2 H N N 184 GLY HA3 H N N 185 GLY HXT H N N 186 GOL C1 C N N 187 GOL O1 O N N 188 GOL C2 C N N 189 GOL O2 O N N 190 GOL C3 C N N 191 GOL O3 O N N 192 GOL H11 H N N 193 GOL H12 H N N 194 GOL HO1 H N N 195 GOL H2 H N N 196 GOL HO2 H N N 197 GOL H31 H N N 198 GOL H32 H N N 199 GOL HO3 H N N 200 HIS N N N N 201 HIS CA C N S 202 HIS C C N N 203 HIS O O N N 204 HIS CB C N N 205 HIS CG C Y N 206 HIS ND1 N Y N 207 HIS CD2 C Y N 208 HIS CE1 C Y N 209 HIS NE2 N Y N 210 HIS OXT O N N 211 HIS H H N N 212 HIS H2 H N N 213 HIS HA H N N 214 HIS HB2 H N N 215 HIS HB3 H N N 216 HIS HD1 H N N 217 HIS HD2 H N N 218 HIS HE1 H N N 219 HIS HE2 H N N 220 HIS HXT H N N 221 HOH O O N N 222 HOH H1 H N N 223 HOH H2 H N N 224 ILE N N N N 225 ILE CA C N S 226 ILE C C N N 227 ILE O O N N 228 ILE CB C N S 229 ILE CG1 C N N 230 ILE CG2 C N N 231 ILE CD1 C N N 232 ILE OXT O N N 233 ILE H H N N 234 ILE H2 H N N 235 ILE HA H N N 236 ILE HB H N N 237 ILE HG12 H N N 238 ILE HG13 H N N 239 ILE HG21 H N N 240 ILE HG22 H N N 241 ILE HG23 H N N 242 ILE HD11 H N N 243 ILE HD12 H N N 244 ILE HD13 H N N 245 ILE HXT H N N 246 LEU N N N N 247 LEU CA C N S 248 LEU C C N N 249 LEU O O N N 250 LEU CB C N N 251 LEU CG C N N 252 LEU CD1 C N N 253 LEU CD2 C N N 254 LEU OXT O N N 255 LEU H H N N 256 LEU H2 H N N 257 LEU HA H N N 258 LEU HB2 H N N 259 LEU HB3 H N N 260 LEU HG H N N 261 LEU HD11 H N N 262 LEU HD12 H N N 263 LEU HD13 H N N 264 LEU HD21 H N N 265 LEU HD22 H N N 266 LEU HD23 H N N 267 LEU HXT H N N 268 LYS N N N N 269 LYS CA C N S 270 LYS C C N N 271 LYS O O N N 272 LYS CB C N N 273 LYS CG C N N 274 LYS CD C N N 275 LYS CE C N N 276 LYS NZ N N N 277 LYS OXT O N N 278 LYS H H N N 279 LYS H2 H N N 280 LYS HA H N N 281 LYS HB2 H N N 282 LYS HB3 H N N 283 LYS HG2 H N N 284 LYS HG3 H N N 285 LYS HD2 H N N 286 LYS HD3 H N N 287 LYS HE2 H N N 288 LYS HE3 H N N 289 LYS HZ1 H N N 290 LYS HZ2 H N N 291 LYS HZ3 H N N 292 LYS HXT H N N 293 MET N N N N 294 MET CA C N S 295 MET C C N N 296 MET O O N N 297 MET CB C N N 298 MET CG C N N 299 MET SD S N N 300 MET CE C N N 301 MET OXT O N N 302 MET H H N N 303 MET H2 H N N 304 MET HA H N N 305 MET HB2 H N N 306 MET HB3 H N N 307 MET HG2 H N N 308 MET HG3 H N N 309 MET HE1 H N N 310 MET HE2 H N N 311 MET HE3 H N N 312 MET HXT H N N 313 PHE N N N N 314 PHE CA C N S 315 PHE C C N N 316 PHE O O N N 317 PHE CB C N N 318 PHE CG C Y N 319 PHE CD1 C Y N 320 PHE CD2 C Y N 321 PHE CE1 C Y N 322 PHE CE2 C Y N 323 PHE CZ C Y N 324 PHE OXT O N N 325 PHE H H N N 326 PHE H2 H N N 327 PHE HA H N N 328 PHE HB2 H N N 329 PHE HB3 H N N 330 PHE HD1 H N N 331 PHE HD2 H N N 332 PHE HE1 H N N 333 PHE HE2 H N N 334 PHE HZ H N N 335 PHE HXT H N N 336 PRO N N N N 337 PRO CA C N S 338 PRO C C N N 339 PRO O O N N 340 PRO CB C N N 341 PRO CG C N N 342 PRO CD C N N 343 PRO OXT O N N 344 PRO H H N N 345 PRO HA H N N 346 PRO HB2 H N N 347 PRO HB3 H N N 348 PRO HG2 H N N 349 PRO HG3 H N N 350 PRO HD2 H N N 351 PRO HD3 H N N 352 PRO HXT H N N 353 SER N N N N 354 SER CA C N S 355 SER C C N N 356 SER O O N N 357 SER CB C N N 358 SER OG O N N 359 SER OXT O N N 360 SER H H N N 361 SER H2 H N N 362 SER HA H N N 363 SER HB2 H N N 364 SER HB3 H N N 365 SER HG H N N 366 SER HXT H N N 367 THR N N N N 368 THR CA C N S 369 THR C C N N 370 THR O O N N 371 THR CB C N R 372 THR OG1 O N N 373 THR CG2 C N N 374 THR OXT O N N 375 THR H H N N 376 THR H2 H N N 377 THR HA H N N 378 THR HB H N N 379 THR HG1 H N N 380 THR HG21 H N N 381 THR HG22 H N N 382 THR HG23 H N N 383 THR HXT H N N 384 TRP N N N N 385 TRP CA C N S 386 TRP C C N N 387 TRP O O N N 388 TRP CB C N N 389 TRP CG C Y N 390 TRP CD1 C Y N 391 TRP CD2 C Y N 392 TRP NE1 N Y N 393 TRP CE2 C Y N 394 TRP CE3 C Y N 395 TRP CZ2 C Y N 396 TRP CZ3 C Y N 397 TRP CH2 C Y N 398 TRP OXT O N N 399 TRP H H N N 400 TRP H2 H N N 401 TRP HA H N N 402 TRP HB2 H N N 403 TRP HB3 H N N 404 TRP HD1 H N N 405 TRP HE1 H N N 406 TRP HE3 H N N 407 TRP HZ2 H N N 408 TRP HZ3 H N N 409 TRP HH2 H N N 410 TRP HXT H N N 411 TYR N N N N 412 TYR CA C N S 413 TYR C C N N 414 TYR O O N N 415 TYR CB C N N 416 TYR CG C Y N 417 TYR CD1 C Y N 418 TYR CD2 C Y N 419 TYR CE1 C Y N 420 TYR CE2 C Y N 421 TYR CZ C Y N 422 TYR OH O N N 423 TYR OXT O N N 424 TYR H H N N 425 TYR H2 H N N 426 TYR HA H N N 427 TYR HB2 H N N 428 TYR HB3 H N N 429 TYR HD1 H N N 430 TYR HD2 H N N 431 TYR HE1 H N N 432 TYR HE2 H N N 433 TYR HH H N N 434 TYR HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 48V N05 C03 sing N N 1 48V C03 O04 doub N N 2 48V C03 C02 sing N N 3 48V N01 C02 sing N N 4 48V C02 C06 sing N N 5 48V C06 S07 sing N N 6 48V S07 C08 sing N N 7 48V O10 C09 doub N N 8 48V C08 C09 sing N N 9 48V C09 O1 sing N N 10 48V N01 H1 sing N N 11 48V N01 H2 sing N N 12 48V C02 H4 sing N N 13 48V N05 H5 sing N N 14 48V N05 H6 sing N N 15 48V C06 H7 sing N N 16 48V C06 H8 sing N N 17 48V C08 H9 sing N N 18 48V C08 H10 sing N N 19 48V O1 H11 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 ARG N CA sing N N 33 ARG N H sing N N 34 ARG N H2 sing N N 35 ARG CA C sing N N 36 ARG CA CB sing N N 37 ARG CA HA sing N N 38 ARG C O doub N N 39 ARG C OXT sing N N 40 ARG CB CG sing N N 41 ARG CB HB2 sing N N 42 ARG CB HB3 sing N N 43 ARG CG CD sing N N 44 ARG CG HG2 sing N N 45 ARG CG HG3 sing N N 46 ARG CD NE sing N N 47 ARG CD HD2 sing N N 48 ARG CD HD3 sing N N 49 ARG NE CZ sing N N 50 ARG NE HE sing N N 51 ARG CZ NH1 sing N N 52 ARG CZ NH2 doub N N 53 ARG NH1 HH11 sing N N 54 ARG NH1 HH12 sing N N 55 ARG NH2 HH21 sing N N 56 ARG NH2 HH22 sing N N 57 ARG OXT HXT sing N N 58 ASN N CA sing N N 59 ASN N H sing N N 60 ASN N H2 sing N N 61 ASN CA C sing N N 62 ASN CA CB sing N N 63 ASN CA HA sing N N 64 ASN C O doub N N 65 ASN C OXT sing N N 66 ASN CB CG sing N N 67 ASN CB HB2 sing N N 68 ASN CB HB3 sing N N 69 ASN CG OD1 doub N N 70 ASN CG ND2 sing N N 71 ASN ND2 HD21 sing N N 72 ASN ND2 HD22 sing N N 73 ASN OXT HXT sing N N 74 ASP N CA sing N N 75 ASP N H sing N N 76 ASP N H2 sing N N 77 ASP CA C sing N N 78 ASP CA CB sing N N 79 ASP CA HA sing N N 80 ASP C O doub N N 81 ASP C OXT sing N N 82 ASP CB CG sing N N 83 ASP CB HB2 sing N N 84 ASP CB HB3 sing N N 85 ASP CG OD1 doub N N 86 ASP CG OD2 sing N N 87 ASP OD2 HD2 sing N N 88 ASP OXT HXT sing N N 89 CYS N CA sing N N 90 CYS N H sing N N 91 CYS N H2 sing N N 92 CYS CA C sing N N 93 CYS CA CB sing N N 94 CYS CA HA sing N N 95 CYS C O doub N N 96 CYS C OXT sing N N 97 CYS CB SG sing N N 98 CYS CB HB2 sing N N 99 CYS CB HB3 sing N N 100 CYS SG HG sing N N 101 CYS OXT HXT sing N N 102 DTY N CA sing N N 103 DTY N H sing N N 104 DTY N H2 sing N N 105 DTY CA C sing N N 106 DTY CA CB sing N N 107 DTY CA HA sing N N 108 DTY C O doub N N 109 DTY C OXT sing N N 110 DTY CB CG sing N N 111 DTY CB HB2 sing N N 112 DTY CB HB3 sing N N 113 DTY CG CD1 doub Y N 114 DTY CG CD2 sing Y N 115 DTY CD1 CE1 sing Y N 116 DTY CD1 HD1 sing N N 117 DTY CD2 CE2 doub Y N 118 DTY CD2 HD2 sing N N 119 DTY CE1 CZ doub Y N 120 DTY CE1 HE1 sing N N 121 DTY CE2 CZ sing Y N 122 DTY CE2 HE2 sing N N 123 DTY CZ OH sing N N 124 DTY OH HH sing N N 125 DTY OXT HXT sing N N 126 FMT C O1 doub N N 127 FMT C O2 sing N N 128 FMT C H sing N N 129 FMT O2 HO2 sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 GOL C1 O1 sing N N 177 GOL C1 C2 sing N N 178 GOL C1 H11 sing N N 179 GOL C1 H12 sing N N 180 GOL O1 HO1 sing N N 181 GOL C2 O2 sing N N 182 GOL C2 C3 sing N N 183 GOL C2 H2 sing N N 184 GOL O2 HO2 sing N N 185 GOL C3 O3 sing N N 186 GOL C3 H31 sing N N 187 GOL C3 H32 sing N N 188 GOL O3 HO3 sing N N 189 HIS N CA sing N N 190 HIS N H sing N N 191 HIS N H2 sing N N 192 HIS CA C sing N N 193 HIS CA CB sing N N 194 HIS CA HA sing N N 195 HIS C O doub N N 196 HIS C OXT sing N N 197 HIS CB CG sing N N 198 HIS CB HB2 sing N N 199 HIS CB HB3 sing N N 200 HIS CG ND1 sing Y N 201 HIS CG CD2 doub Y N 202 HIS ND1 CE1 doub Y N 203 HIS ND1 HD1 sing N N 204 HIS CD2 NE2 sing Y N 205 HIS CD2 HD2 sing N N 206 HIS CE1 NE2 sing Y N 207 HIS CE1 HE1 sing N N 208 HIS NE2 HE2 sing N N 209 HIS OXT HXT sing N N 210 HOH O H1 sing N N 211 HOH O H2 sing N N 212 ILE N CA sing N N 213 ILE N H sing N N 214 ILE N H2 sing N N 215 ILE CA C sing N N 216 ILE CA CB sing N N 217 ILE CA HA sing N N 218 ILE C O doub N N 219 ILE C OXT sing N N 220 ILE CB CG1 sing N N 221 ILE CB CG2 sing N N 222 ILE CB HB sing N N 223 ILE CG1 CD1 sing N N 224 ILE CG1 HG12 sing N N 225 ILE CG1 HG13 sing N N 226 ILE CG2 HG21 sing N N 227 ILE CG2 HG22 sing N N 228 ILE CG2 HG23 sing N N 229 ILE CD1 HD11 sing N N 230 ILE CD1 HD12 sing N N 231 ILE CD1 HD13 sing N N 232 ILE OXT HXT sing N N 233 LEU N CA sing N N 234 LEU N H sing N N 235 LEU N H2 sing N N 236 LEU CA C sing N N 237 LEU CA CB sing N N 238 LEU CA HA sing N N 239 LEU C O doub N N 240 LEU C OXT sing N N 241 LEU CB CG sing N N 242 LEU CB HB2 sing N N 243 LEU CB HB3 sing N N 244 LEU CG CD1 sing N N 245 LEU CG CD2 sing N N 246 LEU CG HG sing N N 247 LEU CD1 HD11 sing N N 248 LEU CD1 HD12 sing N N 249 LEU CD1 HD13 sing N N 250 LEU CD2 HD21 sing N N 251 LEU CD2 HD22 sing N N 252 LEU CD2 HD23 sing N N 253 LEU OXT HXT sing N N 254 LYS N CA sing N N 255 LYS N H sing N N 256 LYS N H2 sing N N 257 LYS CA C sing N N 258 LYS CA CB sing N N 259 LYS CA HA sing N N 260 LYS C O doub N N 261 LYS C OXT sing N N 262 LYS CB CG sing N N 263 LYS CB HB2 sing N N 264 LYS CB HB3 sing N N 265 LYS CG CD sing N N 266 LYS CG HG2 sing N N 267 LYS CG HG3 sing N N 268 LYS CD CE sing N N 269 LYS CD HD2 sing N N 270 LYS CD HD3 sing N N 271 LYS CE NZ sing N N 272 LYS CE HE2 sing N N 273 LYS CE HE3 sing N N 274 LYS NZ HZ1 sing N N 275 LYS NZ HZ2 sing N N 276 LYS NZ HZ3 sing N N 277 LYS OXT HXT sing N N 278 MET N CA sing N N 279 MET N H sing N N 280 MET N H2 sing N N 281 MET CA C sing N N 282 MET CA CB sing N N 283 MET CA HA sing N N 284 MET C O doub N N 285 MET C OXT sing N N 286 MET CB CG sing N N 287 MET CB HB2 sing N N 288 MET CB HB3 sing N N 289 MET CG SD sing N N 290 MET CG HG2 sing N N 291 MET CG HG3 sing N N 292 MET SD CE sing N N 293 MET CE HE1 sing N N 294 MET CE HE2 sing N N 295 MET CE HE3 sing N N 296 MET OXT HXT sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PRO N CA sing N N 321 PRO N CD sing N N 322 PRO N H sing N N 323 PRO CA C sing N N 324 PRO CA CB sing N N 325 PRO CA HA sing N N 326 PRO C O doub N N 327 PRO C OXT sing N N 328 PRO CB CG sing N N 329 PRO CB HB2 sing N N 330 PRO CB HB3 sing N N 331 PRO CG CD sing N N 332 PRO CG HG2 sing N N 333 PRO CG HG3 sing N N 334 PRO CD HD2 sing N N 335 PRO CD HD3 sing N N 336 PRO OXT HXT sing N N 337 SER N CA sing N N 338 SER N H sing N N 339 SER N H2 sing N N 340 SER CA C sing N N 341 SER CA CB sing N N 342 SER CA HA sing N N 343 SER C O doub N N 344 SER C OXT sing N N 345 SER CB OG sing N N 346 SER CB HB2 sing N N 347 SER CB HB3 sing N N 348 SER OG HG sing N N 349 SER OXT HXT sing N N 350 THR N CA sing N N 351 THR N H sing N N 352 THR N H2 sing N N 353 THR CA C sing N N 354 THR CA CB sing N N 355 THR CA HA sing N N 356 THR C O doub N N 357 THR C OXT sing N N 358 THR CB OG1 sing N N 359 THR CB CG2 sing N N 360 THR CB HB sing N N 361 THR OG1 HG1 sing N N 362 THR CG2 HG21 sing N N 363 THR CG2 HG22 sing N N 364 THR CG2 HG23 sing N N 365 THR OXT HXT sing N N 366 TRP N CA sing N N 367 TRP N H sing N N 368 TRP N H2 sing N N 369 TRP CA C sing N N 370 TRP CA CB sing N N 371 TRP CA HA sing N N 372 TRP C O doub N N 373 TRP C OXT sing N N 374 TRP CB CG sing N N 375 TRP CB HB2 sing N N 376 TRP CB HB3 sing N N 377 TRP CG CD1 doub Y N 378 TRP CG CD2 sing Y N 379 TRP CD1 NE1 sing Y N 380 TRP CD1 HD1 sing N N 381 TRP CD2 CE2 doub Y N 382 TRP CD2 CE3 sing Y N 383 TRP NE1 CE2 sing Y N 384 TRP NE1 HE1 sing N N 385 TRP CE2 CZ2 sing Y N 386 TRP CE3 CZ3 doub Y N 387 TRP CE3 HE3 sing N N 388 TRP CZ2 CH2 doub Y N 389 TRP CZ2 HZ2 sing N N 390 TRP CZ3 CH2 sing Y N 391 TRP CZ3 HZ3 sing N N 392 TRP CH2 HH2 sing N N 393 TRP OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 VAL N CA sing N N 419 VAL N H sing N N 420 VAL N H2 sing N N 421 VAL CA C sing N N 422 VAL CA CB sing N N 423 VAL CA HA sing N N 424 VAL C O doub N N 425 VAL C OXT sing N N 426 VAL CB CG1 sing N N 427 VAL CB CG2 sing N N 428 VAL CB HB sing N N 429 VAL CG1 HG11 sing N N 430 VAL CG1 HG12 sing N N 431 VAL CG1 HG13 sing N N 432 VAL CG2 HG21 sing N N 433 VAL CG2 HG22 sing N N 434 VAL CG2 HG23 sing N N 435 VAL OXT HXT sing N N 436 # _pdbx_audit_support.funding_organization 'Australian Research Council (ARC)' _pdbx_audit_support.country Australia _pdbx_audit_support.grant_number DP160101743 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 48V ? ? 48V ? ? 'SUBJECT OF INVESTIGATION' ? 2 DTY ? ? DTY ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 'FORMIC ACID' FMT 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1W24 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Part of the Retromer complex' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 #