data_6XS8 # _entry.id 6XS8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XS8 pdb_00006xs8 10.2210/pdb6xs8/pdb WWPDB D_1000250670 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '6XS5 contains the same protein but complexed with RT-D1' 6XS5 unspecified PDB '6XS7 contains the same protein but complexed with RT-D2' 6XS7 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XS8 _pdbx_database_status.recvd_initial_deposition_date 2020-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, K.-E.' 1 0000-0003-1106-1629 'Guo, Q.' 2 0000-0002-2133-5358 'Collins, B.M.' 3 0000-0002-6070-3774 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first eabg4007 _citation.page_last eabg4007 _citation.title 'De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abg4007 _citation.pdbx_database_id_PubMed 34851660 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, K.E.' 1 0000-0003-1106-1629 primary 'Guo, Q.' 2 0000-0002-2133-5358 primary 'Hill, T.A.' 3 0000-0001-9727-9930 primary 'Cui, Y.' 4 ? primary 'Kendall, A.K.' 5 0000-0002-6176-9177 primary 'Yang, Z.' 6 0000-0002-7987-0855 primary 'Hall, R.J.' 7 0000-0002-8543-0370 primary 'Healy, M.D.' 8 0000-0003-2924-9179 primary 'Sacharz, J.' 9 ? primary 'Norwood, S.J.' 10 ? primary 'Fonseka, S.' 11 0000-0002-0940-2511 primary 'Xie, B.' 12 0000-0003-2829-9254 primary 'Reid, R.C.' 13 0000-0002-0829-239X primary 'Leneva, N.' 14 0000-0001-8102-9769 primary 'Parton, R.G.' 15 0000-0002-7494-5248 primary 'Ghai, R.' 16 ? primary 'Stroud, D.A.' 17 0000-0002-2048-3383 primary 'Fairlie, D.P.' 18 0000-0002-7856-8566 primary 'Suga, H.' 19 ? primary 'Jackson, L.P.' 20 0000-0002-3705-6126 primary 'Teasdale, R.D.' 21 0000-0001-7455-5269 primary 'Passioura, T.' 22 0000-0002-6089-5067 primary 'Collins, B.M.' 23 0000-0002-6070-3774 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6XS8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.520 _cell.length_a_esd ? _cell.length_b 47.520 _cell.length_b_esd ? _cell.length_c 170.990 _cell.length_c_esd ? _cell.volume 334348.494 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ;P 32 2" ; _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vacuolar protein sorting-associated protein 29' 22387.654 1 ? ? ? ? 2 polymer syn 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA 1567.783 1 ? ? ? 'Cyclic peptide RT-D3' 3 water nat water 18.015 166 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSMAFLILVIGNLHIPDRALDIPPKFKKLLSPGKISQTLCLGNLTDRATYDYLRSISPDLKIVRGRMDVEATSLPLMQVV THGSLRIGFLEGFTLVSEEPDVLLAEANKLDVDVLCWAGGSHRFECFEYMDKFFVNPGSATGAFTTDWLAEGEEVVPSFC LMDVQGISLTLYVYQLRKDENGTENVAVEKVTYTKPVEPTGAS ; ;GSMAFLILVIGNLHIPDRALDIPPKFKKLLSPGKISQTLCLGNLTDRATYDYLRSISPDLKIVRGRMDVEATSLPLMQVV THGSLRIGFLEGFTLVSEEPDVLLAEANKLDVDVLCWAGGSHRFECFEYMDKFFVNPGSATGAFTTDWLAEGEEVVPSFC LMDVQGISLTLYVYQLRKDENGTENVAVEKVTYTKPVEPTGAS ; A ? 2 'polypeptide(L)' no yes '(48V)(DTY)GYDPLGLKYFA' XYGYDPLGLKYFA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ALA n 1 5 PHE n 1 6 LEU n 1 7 ILE n 1 8 LEU n 1 9 VAL n 1 10 ILE n 1 11 GLY n 1 12 ASN n 1 13 LEU n 1 14 HIS n 1 15 ILE n 1 16 PRO n 1 17 ASP n 1 18 ARG n 1 19 ALA n 1 20 LEU n 1 21 ASP n 1 22 ILE n 1 23 PRO n 1 24 PRO n 1 25 LYS n 1 26 PHE n 1 27 LYS n 1 28 LYS n 1 29 LEU n 1 30 LEU n 1 31 SER n 1 32 PRO n 1 33 GLY n 1 34 LYS n 1 35 ILE n 1 36 SER n 1 37 GLN n 1 38 THR n 1 39 LEU n 1 40 CYS n 1 41 LEU n 1 42 GLY n 1 43 ASN n 1 44 LEU n 1 45 THR n 1 46 ASP n 1 47 ARG n 1 48 ALA n 1 49 THR n 1 50 TYR n 1 51 ASP n 1 52 TYR n 1 53 LEU n 1 54 ARG n 1 55 SER n 1 56 ILE n 1 57 SER n 1 58 PRO n 1 59 ASP n 1 60 LEU n 1 61 LYS n 1 62 ILE n 1 63 VAL n 1 64 ARG n 1 65 GLY n 1 66 ARG n 1 67 MET n 1 68 ASP n 1 69 VAL n 1 70 GLU n 1 71 ALA n 1 72 THR n 1 73 SER n 1 74 LEU n 1 75 PRO n 1 76 LEU n 1 77 MET n 1 78 GLN n 1 79 VAL n 1 80 VAL n 1 81 THR n 1 82 HIS n 1 83 GLY n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 ILE n 1 88 GLY n 1 89 PHE n 1 90 LEU n 1 91 GLU n 1 92 GLY n 1 93 PHE n 1 94 THR n 1 95 LEU n 1 96 VAL n 1 97 SER n 1 98 GLU n 1 99 GLU n 1 100 PRO n 1 101 ASP n 1 102 VAL n 1 103 LEU n 1 104 LEU n 1 105 ALA n 1 106 GLU n 1 107 ALA n 1 108 ASN n 1 109 LYS n 1 110 LEU n 1 111 ASP n 1 112 VAL n 1 113 ASP n 1 114 VAL n 1 115 LEU n 1 116 CYS n 1 117 TRP n 1 118 ALA n 1 119 GLY n 1 120 GLY n 1 121 SER n 1 122 HIS n 1 123 ARG n 1 124 PHE n 1 125 GLU n 1 126 CYS n 1 127 PHE n 1 128 GLU n 1 129 TYR n 1 130 MET n 1 131 ASP n 1 132 LYS n 1 133 PHE n 1 134 PHE n 1 135 VAL n 1 136 ASN n 1 137 PRO n 1 138 GLY n 1 139 SER n 1 140 ALA n 1 141 THR n 1 142 GLY n 1 143 ALA n 1 144 PHE n 1 145 THR n 1 146 THR n 1 147 ASP n 1 148 TRP n 1 149 LEU n 1 150 ALA n 1 151 GLU n 1 152 GLY n 1 153 GLU n 1 154 GLU n 1 155 VAL n 1 156 VAL n 1 157 PRO n 1 158 SER n 1 159 PHE n 1 160 CYS n 1 161 LEU n 1 162 MET n 1 163 ASP n 1 164 VAL n 1 165 GLN n 1 166 GLY n 1 167 ILE n 1 168 SER n 1 169 LEU n 1 170 THR n 1 171 LEU n 1 172 TYR n 1 173 VAL n 1 174 TYR n 1 175 GLN n 1 176 LEU n 1 177 ARG n 1 178 LYS n 1 179 ASP n 1 180 GLU n 1 181 ASN n 1 182 GLY n 1 183 THR n 1 184 GLU n 1 185 ASN n 1 186 VAL n 1 187 ALA n 1 188 VAL n 1 189 GLU n 1 190 LYS n 1 191 VAL n 1 192 THR n 1 193 TYR n 1 194 THR n 1 195 LYS n 1 196 PRO n 1 197 VAL n 1 198 GLU n 1 199 PRO n 1 200 THR n 1 201 GLY n 1 202 ALA n 1 203 SER n 2 1 48V n 2 2 DTY n 2 3 GLY n 2 4 TYR n 2 5 ASP n 2 6 PRO n 2 7 LEU n 2 8 GLY n 2 9 LEU n 2 10 LYS n 2 11 TYR n 2 12 PHE n 2 13 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 203 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chaetomium thermophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 209285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP G0RZB5_CHATD G0RZB5 ? 1 ;MAFLILVIGNLHIPDRALDIPPKFKKLLSPGKISQTLCLGNLTDRATYDYLRSISPDLKIVRGRMDVEATSLPLMQVVTH GSLRIGFLEGFTLVSEEPDVLLAEANKLDVDVLCWAGGSHRFECFEYMDKFFVNPGSATGAFTTDWLAEGEEVVPSFCLM DVQGISLTLYVYQLRKDENGTENVAVEKVTYTKPVEPTGAS ; 1 2 PDB 6XS8 6XS8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6XS8 A 3 ? 203 ? G0RZB5 1 ? 201 ? 1 201 2 2 6XS8 B 1 ? 13 ? 6XS8 0 ? 12 ? 0 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6XS8 GLY A 1 ? UNP G0RZB5 ? ? 'expression tag' -1 1 1 6XS8 SER A 2 ? UNP G0RZB5 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 48V peptide-like . '{[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetic acid' ? 'C5 H10 N2 O3 S' 178.209 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6XS8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.18 M ammonium citrate dibasic and 20% PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-10 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.953700 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.953700 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate 16.885 _reflns.entry_id 6XS8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 42.750 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20527 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.200 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 3 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.041 _reflns.pdbx_Rpim_I_all 0.013 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 209530 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.830 1.870 ? ? 12616 ? ? ? 1206 99.000 ? ? ? ? 0.146 ? ? ? ? ? ? ? ? 10.500 ? ? ? 9.500 0.154 0.047 ? 1 1 0.995 ? ? 8.970 42.750 ? ? 977 ? ? ? 169 73.900 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? 5.800 ? ? ? 36.300 0.031 0.012 ? 2 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 21.446980057 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6XS8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.95009854987 _refine.ls_d_res_low 41.1509291116 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16942 _refine.ls_number_reflns_R_free 872 _refine.ls_number_reflns_R_work 16070 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.6721025044 _refine.ls_percent_reflns_R_free 5.14697202219 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20705055269 _refine.ls_R_factor_R_free 0.251255925476 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.204687714451 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5W8M _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.266463367 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.199634091036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.95009854987 _refine_hist.d_res_low 41.1509291116 _refine_hist.number_atoms_solvent 166 _refine_hist.number_atoms_total 1715 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1549 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0111480210317 ? 1630 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.31443489423 ? 2216 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0736810685054 ? 256 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00813673023727 ? 282 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 21.431754629 ? 613 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9501 2.0723 . . 152 2597 98.2487491065 . . . 0.266713208014 . 0.220456898585 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0723 2.2323 . . 116 2634 98.7787356322 . . . 0.237979856696 . 0.215906383487 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2323 2.4569 . . 175 2600 98.9304812834 . . . 0.322977457767 . 0.251061994143 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4569 2.8123 . . 131 2727 99.9650227352 . . . 0.244557146875 . 0.2052645318 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8123 3.5429 . . 142 2727 99.9651567944 . . . 0.274360934595 . 0.191356269494 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5429 41.1509 . . 156 2785 96.2999345121 . . . 0.204702612948 . 0.186713683345 . . . . . . . . . . . # _struct.entry_id 6XS8 _struct.title 'Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XS8 _struct_keywords.text 'Vps29, Retromer, Endosome, Protein transport, cyclic peptide, inhibitor, PROTEIN TRANSPORT-INHIBITOR complex' _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 23 ? LYS A 28 ? PRO A 21 LYS A 26 1 ? 6 HELX_P HELX_P2 AA2 ASP A 46 ? SER A 57 ? ASP A 44 SER A 55 1 ? 12 HELX_P HELX_P3 AA3 GLU A 99 ? ASP A 111 ? GLU A 97 ASP A 109 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 48V 1 C09 ? ? ? 1_555 B DTY 2 N ? ? B 48V 0 B DTY 1 1_555 ? ? ? ? ? ? ? 1.553 ? ? covale2 covale both ? B DTY 2 C ? ? ? 1_555 B GLY 3 N ? ? B DTY 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 15 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 13 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 16 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 14 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 60 ? VAL A 63 ? LEU A 58 VAL A 61 AA1 2 GLN A 37 ? LEU A 41 ? GLN A 35 LEU A 39 AA1 3 PHE A 5 ? GLY A 11 ? PHE A 3 GLY A 9 AA1 4 SER A 158 ? GLN A 165 ? SER A 156 GLN A 163 AA1 5 SER A 168 ? LYS A 178 ? SER A 166 LYS A 176 AA1 6 GLU A 184 ? THR A 194 ? GLU A 182 THR A 192 AA2 1 MET A 77 ? HIS A 82 ? MET A 75 HIS A 80 AA2 2 LEU A 85 ? LEU A 90 ? LEU A 83 LEU A 88 AA2 3 VAL A 114 ? TRP A 117 ? VAL A 112 TRP A 115 AA2 4 LYS A 132 ? PRO A 137 ? LYS A 130 PRO A 135 AA2 5 PHE A 124 ? TYR A 129 ? PHE A 122 TYR A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL A 63 ? O VAL A 61 N CYS A 40 ? N CYS A 38 AA1 2 3 O LEU A 39 ? O LEU A 37 N LEU A 8 ? N LEU A 6 AA1 3 4 N VAL A 9 ? N VAL A 7 O CYS A 160 ? O CYS A 158 AA1 4 5 N PHE A 159 ? N PHE A 157 O TYR A 174 ? O TYR A 172 AA1 5 6 N LEU A 171 ? N LEU A 169 O VAL A 191 ? O VAL A 189 AA2 1 2 N VAL A 80 ? N VAL A 78 O ILE A 87 ? O ILE A 85 AA2 2 3 N GLY A 88 ? N GLY A 86 O VAL A 114 ? O VAL A 112 AA2 3 4 N LEU A 115 ? N LEU A 113 O PHE A 133 ? O PHE A 131 AA2 4 5 O ASN A 136 ? O ASN A 134 N GLU A 125 ? N GLU A 123 # _atom_sites.entry_id 6XS8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021044 _atom_sites.fract_transf_matrix[1][2] 0.012150 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024299 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 PHE 5 3 3 PHE PHE A . n A 1 6 LEU 6 4 4 LEU LEU A . n A 1 7 ILE 7 5 5 ILE ILE A . n A 1 8 LEU 8 6 6 LEU LEU A . n A 1 9 VAL 9 7 7 VAL VAL A . n A 1 10 ILE 10 8 8 ILE ILE A . n A 1 11 GLY 11 9 9 GLY GLY A . n A 1 12 ASN 12 10 10 ASN ASN A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 HIS 14 12 12 HIS HIS A . n A 1 15 ILE 15 13 13 ILE ILE A . n A 1 16 PRO 16 14 14 PRO PRO A . n A 1 17 ASP 17 15 15 ASP ASP A . n A 1 18 ARG 18 16 16 ARG ARG A . n A 1 19 ALA 19 17 17 ALA ALA A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 ASP 21 19 19 ASP ASP A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 PRO 23 21 21 PRO PRO A . n A 1 24 PRO 24 22 22 PRO PRO A . n A 1 25 LYS 25 23 23 LYS LYS A . n A 1 26 PHE 26 24 24 PHE PHE A . n A 1 27 LYS 27 25 25 LYS LYS A . n A 1 28 LYS 28 26 26 LYS LYS A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 LEU 30 28 28 LEU LEU A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 PRO 32 30 30 PRO PRO A . n A 1 33 GLY 33 31 31 GLY GLY A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 ILE 35 33 33 ILE ILE A . n A 1 36 SER 36 34 34 SER SER A . n A 1 37 GLN 37 35 35 GLN GLN A . n A 1 38 THR 38 36 36 THR THR A . n A 1 39 LEU 39 37 37 LEU LEU A . n A 1 40 CYS 40 38 38 CYS CYS A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 ASN 43 41 41 ASN ASN A . n A 1 44 LEU 44 42 42 LEU LEU A . n A 1 45 THR 45 43 43 THR THR A . n A 1 46 ASP 46 44 44 ASP ASP A . n A 1 47 ARG 47 45 45 ARG ARG A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 THR 49 47 47 THR THR A . n A 1 50 TYR 50 48 48 TYR TYR A . n A 1 51 ASP 51 49 49 ASP ASP A . n A 1 52 TYR 52 50 50 TYR TYR A . n A 1 53 LEU 53 51 51 LEU LEU A . n A 1 54 ARG 54 52 52 ARG ARG A . n A 1 55 SER 55 53 53 SER SER A . n A 1 56 ILE 56 54 54 ILE ILE A . n A 1 57 SER 57 55 55 SER SER A . n A 1 58 PRO 58 56 56 PRO PRO A . n A 1 59 ASP 59 57 57 ASP ASP A . n A 1 60 LEU 60 58 58 LEU LEU A . n A 1 61 LYS 61 59 59 LYS LYS A . n A 1 62 ILE 62 60 60 ILE ILE A . n A 1 63 VAL 63 61 61 VAL VAL A . n A 1 64 ARG 64 62 62 ARG ARG A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 ARG 66 64 64 ARG ARG A . n A 1 67 MET 67 65 ? ? ? A . n A 1 68 ASP 68 66 ? ? ? A . n A 1 69 VAL 69 67 ? ? ? A . n A 1 70 GLU 70 68 ? ? ? A . n A 1 71 ALA 71 69 ? ? ? A . n A 1 72 THR 72 70 ? ? ? A . n A 1 73 SER 73 71 ? ? ? A . n A 1 74 LEU 74 72 72 LEU LEU A . n A 1 75 PRO 75 73 73 PRO PRO A . n A 1 76 LEU 76 74 74 LEU LEU A . n A 1 77 MET 77 75 75 MET MET A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 VAL 79 77 77 VAL VAL A . n A 1 80 VAL 80 78 78 VAL VAL A . n A 1 81 THR 81 79 79 THR THR A . n A 1 82 HIS 82 80 80 HIS HIS A . n A 1 83 GLY 83 81 81 GLY GLY A . n A 1 84 SER 84 82 82 SER SER A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 ARG 86 84 84 ARG ARG A . n A 1 87 ILE 87 85 85 ILE ILE A . n A 1 88 GLY 88 86 86 GLY GLY A . n A 1 89 PHE 89 87 87 PHE PHE A . n A 1 90 LEU 90 88 88 LEU LEU A . n A 1 91 GLU 91 89 89 GLU GLU A . n A 1 92 GLY 92 90 90 GLY GLY A . n A 1 93 PHE 93 91 91 PHE PHE A . n A 1 94 THR 94 92 92 THR THR A . n A 1 95 LEU 95 93 93 LEU LEU A . n A 1 96 VAL 96 94 94 VAL VAL A . n A 1 97 SER 97 95 95 SER SER A . n A 1 98 GLU 98 96 96 GLU GLU A . n A 1 99 GLU 99 97 97 GLU GLU A . n A 1 100 PRO 100 98 98 PRO PRO A . n A 1 101 ASP 101 99 99 ASP ASP A . n A 1 102 VAL 102 100 100 VAL VAL A . n A 1 103 LEU 103 101 101 LEU LEU A . n A 1 104 LEU 104 102 102 LEU LEU A . n A 1 105 ALA 105 103 103 ALA ALA A . n A 1 106 GLU 106 104 104 GLU GLU A . n A 1 107 ALA 107 105 105 ALA ALA A . n A 1 108 ASN 108 106 106 ASN ASN A . n A 1 109 LYS 109 107 107 LYS LYS A . n A 1 110 LEU 110 108 108 LEU LEU A . n A 1 111 ASP 111 109 109 ASP ASP A . n A 1 112 VAL 112 110 110 VAL VAL A . n A 1 113 ASP 113 111 111 ASP ASP A . n A 1 114 VAL 114 112 112 VAL VAL A . n A 1 115 LEU 115 113 113 LEU LEU A . n A 1 116 CYS 116 114 114 CYS CYS A . n A 1 117 TRP 117 115 115 TRP TRP A . n A 1 118 ALA 118 116 116 ALA ALA A . n A 1 119 GLY 119 117 117 GLY GLY A . n A 1 120 GLY 120 118 118 GLY GLY A . n A 1 121 SER 121 119 119 SER SER A . n A 1 122 HIS 122 120 120 HIS HIS A . n A 1 123 ARG 123 121 121 ARG ARG A . n A 1 124 PHE 124 122 122 PHE PHE A . n A 1 125 GLU 125 123 123 GLU GLU A . n A 1 126 CYS 126 124 124 CYS CYS A . n A 1 127 PHE 127 125 125 PHE PHE A . n A 1 128 GLU 128 126 126 GLU GLU A . n A 1 129 TYR 129 127 127 TYR TYR A . n A 1 130 MET 130 128 128 MET MET A . n A 1 131 ASP 131 129 129 ASP ASP A . n A 1 132 LYS 132 130 130 LYS LYS A . n A 1 133 PHE 133 131 131 PHE PHE A . n A 1 134 PHE 134 132 132 PHE PHE A . n A 1 135 VAL 135 133 133 VAL VAL A . n A 1 136 ASN 136 134 134 ASN ASN A . n A 1 137 PRO 137 135 135 PRO PRO A . n A 1 138 GLY 138 136 136 GLY GLY A . n A 1 139 SER 139 137 137 SER SER A . n A 1 140 ALA 140 138 138 ALA ALA A . n A 1 141 THR 141 139 139 THR THR A . n A 1 142 GLY 142 140 140 GLY GLY A . n A 1 143 ALA 143 141 141 ALA ALA A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 THR 145 143 143 THR THR A . n A 1 146 THR 146 144 144 THR THR A . n A 1 147 ASP 147 145 145 ASP ASP A . n A 1 148 TRP 148 146 ? ? ? A . n A 1 149 LEU 149 147 ? ? ? A . n A 1 150 ALA 150 148 ? ? ? A . n A 1 151 GLU 151 149 ? ? ? A . n A 1 152 GLY 152 150 ? ? ? A . n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 GLU 154 152 152 GLU GLU A . n A 1 155 VAL 155 153 153 VAL VAL A . n A 1 156 VAL 156 154 154 VAL VAL A . n A 1 157 PRO 157 155 155 PRO PRO A . n A 1 158 SER 158 156 156 SER SER A . n A 1 159 PHE 159 157 157 PHE PHE A . n A 1 160 CYS 160 158 158 CYS CYS A . n A 1 161 LEU 161 159 159 LEU LEU A . n A 1 162 MET 162 160 160 MET MET A . n A 1 163 ASP 163 161 161 ASP ASP A . n A 1 164 VAL 164 162 162 VAL VAL A . n A 1 165 GLN 165 163 163 GLN GLN A . n A 1 166 GLY 166 164 164 GLY GLY A . n A 1 167 ILE 167 165 165 ILE ILE A . n A 1 168 SER 168 166 166 SER SER A . n A 1 169 LEU 169 167 167 LEU LEU A . n A 1 170 THR 170 168 168 THR THR A . n A 1 171 LEU 171 169 169 LEU LEU A . n A 1 172 TYR 172 170 170 TYR TYR A . n A 1 173 VAL 173 171 171 VAL VAL A . n A 1 174 TYR 174 172 172 TYR TYR A . n A 1 175 GLN 175 173 173 GLN GLN A . n A 1 176 LEU 176 174 174 LEU LEU A . n A 1 177 ARG 177 175 175 ARG ARG A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 ASP 179 177 177 ASP ASP A . n A 1 180 GLU 180 178 178 GLU GLU A . n A 1 181 ASN 181 179 179 ASN ASN A . n A 1 182 GLY 182 180 180 GLY GLY A . n A 1 183 THR 183 181 181 THR THR A . n A 1 184 GLU 184 182 182 GLU GLU A . n A 1 185 ASN 185 183 183 ASN ASN A . n A 1 186 VAL 186 184 184 VAL VAL A . n A 1 187 ALA 187 185 185 ALA ALA A . n A 1 188 VAL 188 186 186 VAL VAL A . n A 1 189 GLU 189 187 187 GLU GLU A . n A 1 190 LYS 190 188 188 LYS LYS A . n A 1 191 VAL 191 189 189 VAL VAL A . n A 1 192 THR 192 190 190 THR THR A . n A 1 193 TYR 193 191 191 TYR TYR A . n A 1 194 THR 194 192 192 THR THR A . n A 1 195 LYS 195 193 193 LYS LYS A . n A 1 196 PRO 196 194 194 PRO PRO A . n A 1 197 VAL 197 195 195 VAL VAL A . n A 1 198 GLU 198 196 ? ? ? A . n A 1 199 PRO 199 197 ? ? ? A . n A 1 200 THR 200 198 ? ? ? A . n A 1 201 GLY 201 199 ? ? ? A . n A 1 202 ALA 202 200 ? ? ? A . n A 1 203 SER 203 201 ? ? ? A . n B 2 1 48V 1 0 0 48V 48V B . n B 2 2 DTY 2 1 1 DTY DTY B . n B 2 3 GLY 3 2 2 GLY GLY B . n B 2 4 TYR 4 3 3 TYR TYR B . n B 2 5 ASP 5 4 4 ASP ASP B . n B 2 6 PRO 6 5 5 PRO PRO B . n B 2 7 LEU 7 6 6 LEU LEU B . n B 2 8 GLY 8 7 7 GLY GLY B . n B 2 9 LEU 9 8 8 LEU LEU B . n B 2 10 LYS 10 9 9 LYS LYS B . n B 2 11 TYR 11 10 10 TYR TYR B . n B 2 12 PHE 12 11 11 PHE PHE B . n B 2 13 ALA 13 12 12 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 301 46 HOH HOH A . C 3 HOH 2 302 66 HOH HOH A . C 3 HOH 3 303 60 HOH HOH A . C 3 HOH 4 304 29 HOH HOH A . C 3 HOH 5 305 158 HOH HOH A . C 3 HOH 6 306 135 HOH HOH A . C 3 HOH 7 307 125 HOH HOH A . C 3 HOH 8 308 108 HOH HOH A . C 3 HOH 9 309 3 HOH HOH A . C 3 HOH 10 310 121 HOH HOH A . C 3 HOH 11 311 72 HOH HOH A . C 3 HOH 12 312 15 HOH HOH A . C 3 HOH 13 313 161 HOH HOH A . C 3 HOH 14 314 11 HOH HOH A . C 3 HOH 15 315 40 HOH HOH A . C 3 HOH 16 316 12 HOH HOH A . C 3 HOH 17 317 154 HOH HOH A . C 3 HOH 18 318 34 HOH HOH A . C 3 HOH 19 319 84 HOH HOH A . C 3 HOH 20 320 136 HOH HOH A . C 3 HOH 21 321 62 HOH HOH A . C 3 HOH 22 322 163 HOH HOH A . C 3 HOH 23 323 110 HOH HOH A . C 3 HOH 24 324 1 HOH HOH A . C 3 HOH 25 325 95 HOH HOH A . C 3 HOH 26 326 24 HOH HOH A . C 3 HOH 27 327 118 HOH HOH A . C 3 HOH 28 328 156 HOH HOH A . C 3 HOH 29 329 100 HOH HOH A . C 3 HOH 30 330 2 HOH HOH A . C 3 HOH 31 331 13 HOH HOH A . C 3 HOH 32 332 6 HOH HOH A . C 3 HOH 33 333 147 HOH HOH A . C 3 HOH 34 334 117 HOH HOH A . C 3 HOH 35 335 36 HOH HOH A . C 3 HOH 36 336 63 HOH HOH A . C 3 HOH 37 337 5 HOH HOH A . C 3 HOH 38 338 75 HOH HOH A . C 3 HOH 39 339 146 HOH HOH A . C 3 HOH 40 340 32 HOH HOH A . C 3 HOH 41 341 101 HOH HOH A . C 3 HOH 42 342 20 HOH HOH A . C 3 HOH 43 343 119 HOH HOH A . C 3 HOH 44 344 21 HOH HOH A . C 3 HOH 45 345 83 HOH HOH A . C 3 HOH 46 346 4 HOH HOH A . C 3 HOH 47 347 41 HOH HOH A . C 3 HOH 48 348 106 HOH HOH A . C 3 HOH 49 349 81 HOH HOH A . C 3 HOH 50 350 28 HOH HOH A . C 3 HOH 51 351 55 HOH HOH A . C 3 HOH 52 352 33 HOH HOH A . C 3 HOH 53 353 18 HOH HOH A . C 3 HOH 54 354 14 HOH HOH A . C 3 HOH 55 355 137 HOH HOH A . C 3 HOH 56 356 132 HOH HOH A . C 3 HOH 57 357 127 HOH HOH A . C 3 HOH 58 358 51 HOH HOH A . C 3 HOH 59 359 7 HOH HOH A . C 3 HOH 60 360 86 HOH HOH A . C 3 HOH 61 361 64 HOH HOH A . C 3 HOH 62 362 9 HOH HOH A . C 3 HOH 63 363 16 HOH HOH A . C 3 HOH 64 364 22 HOH HOH A . C 3 HOH 65 365 48 HOH HOH A . C 3 HOH 66 366 70 HOH HOH A . C 3 HOH 67 367 120 HOH HOH A . C 3 HOH 68 368 104 HOH HOH A . C 3 HOH 69 369 97 HOH HOH A . C 3 HOH 70 370 30 HOH HOH A . C 3 HOH 71 371 69 HOH HOH A . C 3 HOH 72 372 122 HOH HOH A . C 3 HOH 73 373 149 HOH HOH A . C 3 HOH 74 374 43 HOH HOH A . C 3 HOH 75 375 99 HOH HOH A . C 3 HOH 76 376 93 HOH HOH A . C 3 HOH 77 377 38 HOH HOH A . C 3 HOH 78 378 102 HOH HOH A . C 3 HOH 79 379 162 HOH HOH A . C 3 HOH 80 380 131 HOH HOH A . C 3 HOH 81 381 49 HOH HOH A . C 3 HOH 82 382 77 HOH HOH A . C 3 HOH 83 383 76 HOH HOH A . C 3 HOH 84 384 10 HOH HOH A . C 3 HOH 85 385 103 HOH HOH A . C 3 HOH 86 386 37 HOH HOH A . C 3 HOH 87 387 65 HOH HOH A . C 3 HOH 88 388 35 HOH HOH A . C 3 HOH 89 389 39 HOH HOH A . C 3 HOH 90 390 79 HOH HOH A . C 3 HOH 91 391 50 HOH HOH A . C 3 HOH 92 392 53 HOH HOH A . C 3 HOH 93 393 31 HOH HOH A . C 3 HOH 94 394 90 HOH HOH A . C 3 HOH 95 395 124 HOH HOH A . C 3 HOH 96 396 87 HOH HOH A . C 3 HOH 97 397 52 HOH HOH A . C 3 HOH 98 398 133 HOH HOH A . C 3 HOH 99 399 27 HOH HOH A . C 3 HOH 100 400 59 HOH HOH A . C 3 HOH 101 401 96 HOH HOH A . C 3 HOH 102 402 142 HOH HOH A . C 3 HOH 103 403 107 HOH HOH A . C 3 HOH 104 404 116 HOH HOH A . C 3 HOH 105 405 74 HOH HOH A . C 3 HOH 106 406 126 HOH HOH A . C 3 HOH 107 407 151 HOH HOH A . C 3 HOH 108 408 91 HOH HOH A . C 3 HOH 109 409 138 HOH HOH A . C 3 HOH 110 410 144 HOH HOH A . C 3 HOH 111 411 58 HOH HOH A . C 3 HOH 112 412 25 HOH HOH A . C 3 HOH 113 413 88 HOH HOH A . C 3 HOH 114 414 26 HOH HOH A . C 3 HOH 115 415 82 HOH HOH A . C 3 HOH 116 416 94 HOH HOH A . C 3 HOH 117 417 19 HOH HOH A . C 3 HOH 118 418 130 HOH HOH A . C 3 HOH 119 419 54 HOH HOH A . C 3 HOH 120 420 42 HOH HOH A . C 3 HOH 121 421 153 HOH HOH A . C 3 HOH 122 422 56 HOH HOH A . C 3 HOH 123 423 112 HOH HOH A . C 3 HOH 124 424 98 HOH HOH A . C 3 HOH 125 425 68 HOH HOH A . C 3 HOH 126 426 67 HOH HOH A . C 3 HOH 127 427 145 HOH HOH A . C 3 HOH 128 428 47 HOH HOH A . C 3 HOH 129 429 159 HOH HOH A . C 3 HOH 130 430 115 HOH HOH A . C 3 HOH 131 431 134 HOH HOH A . C 3 HOH 132 432 92 HOH HOH A . C 3 HOH 133 433 44 HOH HOH A . C 3 HOH 134 434 148 HOH HOH A . C 3 HOH 135 435 140 HOH HOH A . C 3 HOH 136 436 139 HOH HOH A . C 3 HOH 137 437 89 HOH HOH A . C 3 HOH 138 438 143 HOH HOH A . C 3 HOH 139 439 141 HOH HOH A . C 3 HOH 140 440 61 HOH HOH A . C 3 HOH 141 441 150 HOH HOH A . C 3 HOH 142 442 114 HOH HOH A . C 3 HOH 143 443 78 HOH HOH A . C 3 HOH 144 444 57 HOH HOH A . C 3 HOH 145 445 71 HOH HOH A . C 3 HOH 146 446 113 HOH HOH A . C 3 HOH 147 447 111 HOH HOH A . C 3 HOH 148 448 167 HOH HOH A . C 3 HOH 149 449 85 HOH HOH A . C 3 HOH 150 450 105 HOH HOH A . C 3 HOH 151 451 152 HOH HOH A . C 3 HOH 152 452 155 HOH HOH A . C 3 HOH 153 453 123 HOH HOH A . C 3 HOH 154 454 129 HOH HOH A . C 3 HOH 155 455 160 HOH HOH A . C 3 HOH 156 456 128 HOH HOH A . D 3 HOH 1 101 73 HOH HOH B . D 3 HOH 2 102 168 HOH HOH B . D 3 HOH 3 103 45 HOH HOH B . D 3 HOH 4 104 109 HOH HOH B . D 3 HOH 5 105 8 HOH HOH B . D 3 HOH 6 106 23 HOH HOH B . D 3 HOH 7 107 17 HOH HOH B . D 3 HOH 8 108 80 HOH HOH B . D 3 HOH 9 109 165 HOH HOH B . D 3 HOH 10 110 164 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 800 ? 1 MORE -8 ? 1 'SSA (A^2)' 10100 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 456 ? C HOH . 2 1 B HOH 105 ? D HOH . 3 1 B HOH 107 ? D HOH . 4 1 B HOH 109 ? D HOH . 5 1 B HOH 110 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-14 2 'Structure model' 1 1 2021-12-15 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_ISSN' 3 2 'Structure model' '_citation.journal_volume' 4 2 'Structure model' '_citation.page_first' 5 2 'Structure model' '_citation.page_last' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_database_2.pdbx_DOI' 11 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z # _pdbx_phasing_MR.entry_id 6XS8 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.830 _pdbx_phasing_MR.d_res_low_rotation 41.150 _pdbx_phasing_MR.d_res_high_translation 1.830 _pdbx_phasing_MR.d_res_low_translation 41.150 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.2 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6XS8 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N01 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 48V _pdbx_validate_close_contact.auth_seq_id_1 0 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ALA _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.64 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 56 ? ? -89.97 46.59 2 1 ASP A 57 ? ? 171.69 98.04 3 1 ALA A 116 ? ? -101.99 73.39 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 452 ? 5.86 . 2 1 O ? A HOH 453 ? 5.94 . 3 1 O ? A HOH 454 ? 6.41 . 4 1 O ? A HOH 455 ? 6.65 . 5 1 O ? A HOH 456 ? 7.16 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 26 ? CD ? A LYS 28 CD 2 1 Y 0 A LYS 26 ? CE ? A LYS 28 CE 3 1 Y 0 A LYS 26 ? NZ ? A LYS 28 NZ 4 1 Y 0 A ARG 64 ? CB ? A ARG 66 CB 5 1 Y 0 A ARG 64 ? CG ? A ARG 66 CG 6 1 Y 0 A ARG 64 ? CD ? A ARG 66 CD 7 1 Y 0 A ARG 64 ? NE ? A ARG 66 NE 8 1 Y 0 A ARG 64 ? CZ ? A ARG 66 CZ 9 1 Y 0 A ARG 64 ? NH1 ? A ARG 66 NH1 10 1 Y 0 A ARG 64 ? NH2 ? A ARG 66 NH2 11 1 Y 0 A LEU 72 ? CB ? A LEU 74 CB 12 1 Y 0 A LEU 72 ? CG ? A LEU 74 CG 13 1 Y 0 A LEU 72 ? CD1 ? A LEU 74 CD1 14 1 Y 0 A LEU 72 ? CD2 ? A LEU 74 CD2 15 1 Y 0 A PHE 91 ? CG ? A PHE 93 CG 16 1 Y 0 A PHE 91 ? CD1 ? A PHE 93 CD1 17 1 Y 0 A PHE 91 ? CD2 ? A PHE 93 CD2 18 1 Y 0 A PHE 91 ? CE1 ? A PHE 93 CE1 19 1 Y 0 A PHE 91 ? CE2 ? A PHE 93 CE2 20 1 Y 0 A PHE 91 ? CZ ? A PHE 93 CZ 21 1 Y 0 A LYS 176 ? CE ? A LYS 178 CE 22 1 Y 0 A LYS 176 ? NZ ? A LYS 178 NZ 23 1 Y 0 B 48V 0 ? N01 ? B 48V 1 N01 24 1 Y 0 B 48V 0 ? C06 ? B 48V 1 C06 25 1 Y 0 B 48V 0 ? S07 ? B 48V 1 S07 26 1 Y 0 B 48V 0 ? C08 ? B 48V 1 C08 27 1 Y 0 B 48V 0 ? C09 ? B 48V 1 C09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A MET 65 ? A MET 67 3 1 Y 1 A ASP 66 ? A ASP 68 4 1 Y 1 A VAL 67 ? A VAL 69 5 1 Y 1 A GLU 68 ? A GLU 70 6 1 Y 1 A ALA 69 ? A ALA 71 7 1 Y 1 A THR 70 ? A THR 72 8 1 Y 1 A SER 71 ? A SER 73 9 1 Y 1 A TRP 146 ? A TRP 148 10 1 Y 1 A LEU 147 ? A LEU 149 11 1 Y 1 A ALA 148 ? A ALA 150 12 1 Y 1 A GLU 149 ? A GLU 151 13 1 Y 1 A GLY 150 ? A GLY 152 14 1 Y 1 A GLU 196 ? A GLU 198 15 1 Y 1 A PRO 197 ? A PRO 199 16 1 Y 1 A THR 198 ? A THR 200 17 1 Y 1 A GLY 199 ? A GLY 201 18 1 Y 1 A ALA 200 ? A ALA 202 19 1 Y 1 A SER 201 ? A SER 203 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 48V O10 O N N 1 48V N01 N N N 2 48V C02 C N R 3 48V C03 C N N 4 48V O04 O N N 5 48V N05 N N N 6 48V C06 C N N 7 48V S07 S N N 8 48V C08 C N N 9 48V C09 C N N 10 48V O1 O N N 11 48V H1 H N N 12 48V H2 H N N 13 48V H4 H N N 14 48V H5 H N N 15 48V H6 H N N 16 48V H7 H N N 17 48V H8 H N N 18 48V H9 H N N 19 48V H10 H N N 20 48V H11 H N N 21 ALA N N N N 22 ALA CA C N S 23 ALA C C N N 24 ALA O O N N 25 ALA CB C N N 26 ALA OXT O N N 27 ALA H H N N 28 ALA H2 H N N 29 ALA HA H N N 30 ALA HB1 H N N 31 ALA HB2 H N N 32 ALA HB3 H N N 33 ALA HXT H N N 34 ARG N N N N 35 ARG CA C N S 36 ARG C C N N 37 ARG O O N N 38 ARG CB C N N 39 ARG CG C N N 40 ARG CD C N N 41 ARG NE N N N 42 ARG CZ C N N 43 ARG NH1 N N N 44 ARG NH2 N N N 45 ARG OXT O N N 46 ARG H H N N 47 ARG H2 H N N 48 ARG HA H N N 49 ARG HB2 H N N 50 ARG HB3 H N N 51 ARG HG2 H N N 52 ARG HG3 H N N 53 ARG HD2 H N N 54 ARG HD3 H N N 55 ARG HE H N N 56 ARG HH11 H N N 57 ARG HH12 H N N 58 ARG HH21 H N N 59 ARG HH22 H N N 60 ARG HXT H N N 61 ASN N N N N 62 ASN CA C N S 63 ASN C C N N 64 ASN O O N N 65 ASN CB C N N 66 ASN CG C N N 67 ASN OD1 O N N 68 ASN ND2 N N N 69 ASN OXT O N N 70 ASN H H N N 71 ASN H2 H N N 72 ASN HA H N N 73 ASN HB2 H N N 74 ASN HB3 H N N 75 ASN HD21 H N N 76 ASN HD22 H N N 77 ASN HXT H N N 78 ASP N N N N 79 ASP CA C N S 80 ASP C C N N 81 ASP O O N N 82 ASP CB C N N 83 ASP CG C N N 84 ASP OD1 O N N 85 ASP OD2 O N N 86 ASP OXT O N N 87 ASP H H N N 88 ASP H2 H N N 89 ASP HA H N N 90 ASP HB2 H N N 91 ASP HB3 H N N 92 ASP HD2 H N N 93 ASP HXT H N N 94 CYS N N N N 95 CYS CA C N R 96 CYS C C N N 97 CYS O O N N 98 CYS CB C N N 99 CYS SG S N N 100 CYS OXT O N N 101 CYS H H N N 102 CYS H2 H N N 103 CYS HA H N N 104 CYS HB2 H N N 105 CYS HB3 H N N 106 CYS HG H N N 107 CYS HXT H N N 108 DTY N N N N 109 DTY CA C N R 110 DTY C C N N 111 DTY O O N N 112 DTY CB C N N 113 DTY CG C Y N 114 DTY CD1 C Y N 115 DTY CD2 C Y N 116 DTY CE1 C Y N 117 DTY CE2 C Y N 118 DTY CZ C Y N 119 DTY OH O N N 120 DTY OXT O N N 121 DTY H H N N 122 DTY H2 H N N 123 DTY HA H N N 124 DTY HB2 H N N 125 DTY HB3 H N N 126 DTY HD1 H N N 127 DTY HD2 H N N 128 DTY HE1 H N N 129 DTY HE2 H N N 130 DTY HH H N N 131 DTY HXT H N N 132 GLN N N N N 133 GLN CA C N S 134 GLN C C N N 135 GLN O O N N 136 GLN CB C N N 137 GLN CG C N N 138 GLN CD C N N 139 GLN OE1 O N N 140 GLN NE2 N N N 141 GLN OXT O N N 142 GLN H H N N 143 GLN H2 H N N 144 GLN HA H N N 145 GLN HB2 H N N 146 GLN HB3 H N N 147 GLN HG2 H N N 148 GLN HG3 H N N 149 GLN HE21 H N N 150 GLN HE22 H N N 151 GLN HXT H N N 152 GLU N N N N 153 GLU CA C N S 154 GLU C C N N 155 GLU O O N N 156 GLU CB C N N 157 GLU CG C N N 158 GLU CD C N N 159 GLU OE1 O N N 160 GLU OE2 O N N 161 GLU OXT O N N 162 GLU H H N N 163 GLU H2 H N N 164 GLU HA H N N 165 GLU HB2 H N N 166 GLU HB3 H N N 167 GLU HG2 H N N 168 GLU HG3 H N N 169 GLU HE2 H N N 170 GLU HXT H N N 171 GLY N N N N 172 GLY CA C N N 173 GLY C C N N 174 GLY O O N N 175 GLY OXT O N N 176 GLY H H N N 177 GLY H2 H N N 178 GLY HA2 H N N 179 GLY HA3 H N N 180 GLY HXT H N N 181 HIS N N N N 182 HIS CA C N S 183 HIS C C N N 184 HIS O O N N 185 HIS CB C N N 186 HIS CG C Y N 187 HIS ND1 N Y N 188 HIS CD2 C Y N 189 HIS CE1 C Y N 190 HIS NE2 N Y N 191 HIS OXT O N N 192 HIS H H N N 193 HIS H2 H N N 194 HIS HA H N N 195 HIS HB2 H N N 196 HIS HB3 H N N 197 HIS HD1 H N N 198 HIS HD2 H N N 199 HIS HE1 H N N 200 HIS HE2 H N N 201 HIS HXT H N N 202 HOH O O N N 203 HOH H1 H N N 204 HOH H2 H N N 205 ILE N N N N 206 ILE CA C N S 207 ILE C C N N 208 ILE O O N N 209 ILE CB C N S 210 ILE CG1 C N N 211 ILE CG2 C N N 212 ILE CD1 C N N 213 ILE OXT O N N 214 ILE H H N N 215 ILE H2 H N N 216 ILE HA H N N 217 ILE HB H N N 218 ILE HG12 H N N 219 ILE HG13 H N N 220 ILE HG21 H N N 221 ILE HG22 H N N 222 ILE HG23 H N N 223 ILE HD11 H N N 224 ILE HD12 H N N 225 ILE HD13 H N N 226 ILE HXT H N N 227 LEU N N N N 228 LEU CA C N S 229 LEU C C N N 230 LEU O O N N 231 LEU CB C N N 232 LEU CG C N N 233 LEU CD1 C N N 234 LEU CD2 C N N 235 LEU OXT O N N 236 LEU H H N N 237 LEU H2 H N N 238 LEU HA H N N 239 LEU HB2 H N N 240 LEU HB3 H N N 241 LEU HG H N N 242 LEU HD11 H N N 243 LEU HD12 H N N 244 LEU HD13 H N N 245 LEU HD21 H N N 246 LEU HD22 H N N 247 LEU HD23 H N N 248 LEU HXT H N N 249 LYS N N N N 250 LYS CA C N S 251 LYS C C N N 252 LYS O O N N 253 LYS CB C N N 254 LYS CG C N N 255 LYS CD C N N 256 LYS CE C N N 257 LYS NZ N N N 258 LYS OXT O N N 259 LYS H H N N 260 LYS H2 H N N 261 LYS HA H N N 262 LYS HB2 H N N 263 LYS HB3 H N N 264 LYS HG2 H N N 265 LYS HG3 H N N 266 LYS HD2 H N N 267 LYS HD3 H N N 268 LYS HE2 H N N 269 LYS HE3 H N N 270 LYS HZ1 H N N 271 LYS HZ2 H N N 272 LYS HZ3 H N N 273 LYS HXT H N N 274 MET N N N N 275 MET CA C N S 276 MET C C N N 277 MET O O N N 278 MET CB C N N 279 MET CG C N N 280 MET SD S N N 281 MET CE C N N 282 MET OXT O N N 283 MET H H N N 284 MET H2 H N N 285 MET HA H N N 286 MET HB2 H N N 287 MET HB3 H N N 288 MET HG2 H N N 289 MET HG3 H N N 290 MET HE1 H N N 291 MET HE2 H N N 292 MET HE3 H N N 293 MET HXT H N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 48V N05 C03 sing N N 1 48V C03 O04 doub N N 2 48V C03 C02 sing N N 3 48V N01 C02 sing N N 4 48V C02 C06 sing N N 5 48V C06 S07 sing N N 6 48V S07 C08 sing N N 7 48V O10 C09 doub N N 8 48V C08 C09 sing N N 9 48V C09 O1 sing N N 10 48V N01 H1 sing N N 11 48V N01 H2 sing N N 12 48V C02 H4 sing N N 13 48V N05 H5 sing N N 14 48V N05 H6 sing N N 15 48V C06 H7 sing N N 16 48V C06 H8 sing N N 17 48V C08 H9 sing N N 18 48V C08 H10 sing N N 19 48V O1 H11 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 ARG N CA sing N N 33 ARG N H sing N N 34 ARG N H2 sing N N 35 ARG CA C sing N N 36 ARG CA CB sing N N 37 ARG CA HA sing N N 38 ARG C O doub N N 39 ARG C OXT sing N N 40 ARG CB CG sing N N 41 ARG CB HB2 sing N N 42 ARG CB HB3 sing N N 43 ARG CG CD sing N N 44 ARG CG HG2 sing N N 45 ARG CG HG3 sing N N 46 ARG CD NE sing N N 47 ARG CD HD2 sing N N 48 ARG CD HD3 sing N N 49 ARG NE CZ sing N N 50 ARG NE HE sing N N 51 ARG CZ NH1 sing N N 52 ARG CZ NH2 doub N N 53 ARG NH1 HH11 sing N N 54 ARG NH1 HH12 sing N N 55 ARG NH2 HH21 sing N N 56 ARG NH2 HH22 sing N N 57 ARG OXT HXT sing N N 58 ASN N CA sing N N 59 ASN N H sing N N 60 ASN N H2 sing N N 61 ASN CA C sing N N 62 ASN CA CB sing N N 63 ASN CA HA sing N N 64 ASN C O doub N N 65 ASN C OXT sing N N 66 ASN CB CG sing N N 67 ASN CB HB2 sing N N 68 ASN CB HB3 sing N N 69 ASN CG OD1 doub N N 70 ASN CG ND2 sing N N 71 ASN ND2 HD21 sing N N 72 ASN ND2 HD22 sing N N 73 ASN OXT HXT sing N N 74 ASP N CA sing N N 75 ASP N H sing N N 76 ASP N H2 sing N N 77 ASP CA C sing N N 78 ASP CA CB sing N N 79 ASP CA HA sing N N 80 ASP C O doub N N 81 ASP C OXT sing N N 82 ASP CB CG sing N N 83 ASP CB HB2 sing N N 84 ASP CB HB3 sing N N 85 ASP CG OD1 doub N N 86 ASP CG OD2 sing N N 87 ASP OD2 HD2 sing N N 88 ASP OXT HXT sing N N 89 CYS N CA sing N N 90 CYS N H sing N N 91 CYS N H2 sing N N 92 CYS CA C sing N N 93 CYS CA CB sing N N 94 CYS CA HA sing N N 95 CYS C O doub N N 96 CYS C OXT sing N N 97 CYS CB SG sing N N 98 CYS CB HB2 sing N N 99 CYS CB HB3 sing N N 100 CYS SG HG sing N N 101 CYS OXT HXT sing N N 102 DTY N CA sing N N 103 DTY N H sing N N 104 DTY N H2 sing N N 105 DTY CA C sing N N 106 DTY CA CB sing N N 107 DTY CA HA sing N N 108 DTY C O doub N N 109 DTY C OXT sing N N 110 DTY CB CG sing N N 111 DTY CB HB2 sing N N 112 DTY CB HB3 sing N N 113 DTY CG CD1 doub Y N 114 DTY CG CD2 sing Y N 115 DTY CD1 CE1 sing Y N 116 DTY CD1 HD1 sing N N 117 DTY CD2 CE2 doub Y N 118 DTY CD2 HD2 sing N N 119 DTY CE1 CZ doub Y N 120 DTY CE1 HE1 sing N N 121 DTY CE2 CZ sing Y N 122 DTY CE2 HE2 sing N N 123 DTY CZ OH sing N N 124 DTY OH HH sing N N 125 DTY OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # _pdbx_audit_support.funding_organization 'Australian Research Council (ARC)' _pdbx_audit_support.country Australia _pdbx_audit_support.grant_number DP160101743 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 48V ? ? 48V ? ? 'SUBJECT OF INVESTIGATION' ? 2 DTY ? ? DTY ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5W8M _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'ctVps29 maintained the monomeric state in the presence of RT-D3.' # _space_group.name_H-M_alt 'P 32 2 1' _space_group.name_Hall ;P 32 2" ; _space_group.IT_number 154 _space_group.crystal_system trigonal _space_group.id 1 #