HEADER HYDROLASE 15-JUL-20 6XSO TITLE GH5-4 BROAD SPECIFICITY ENDOGLUCANASE FROM AN UNCULTURED BACTERIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELLULASE, XYLANASE, GH5, ENDOGLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BINGMAN,R.W.SMITH,E.M.GLASGOW,B.G.FOX REVDAT 3 18-OCT-23 6XSO 1 REMARK REVDAT 2 17-FEB-21 6XSO 1 JRNL REVDAT 1 18-NOV-20 6XSO 0 JRNL AUTH E.M.GLASGOW,E.I.KEMNA,C.A.BINGMAN,N.ING,K.DENG, JRNL AUTH 2 C.M.BIANCHETTI,T.E.TAKASUKA,T.R.NORTHEN,B.G.FOX JRNL TITL A STRUCTURAL AND KINETIC SURVEY OF GH5_4 ENDOGLUCANASES JRNL TITL 2 REVEALS DETERMINANTS OF BROAD SUBSTRATE SPECIFICITY AND JRNL TITL 3 OPPORTUNITIES FOR BIOMASS HYDROLYSIS. JRNL REF J.BIOL.CHEM. V. 295 17752 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33454012 JRNL DOI 10.1074/JBC.RA120.015328 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 140711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.410 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5200 - 3.6100 1.00 10411 157 0.1413 0.1523 REMARK 3 2 3.6100 - 2.8700 1.00 10078 140 0.1435 0.1720 REMARK 3 3 2.8700 - 2.5100 1.00 10025 99 0.1407 0.1586 REMARK 3 4 2.5100 - 2.2800 1.00 9893 198 0.1331 0.1561 REMARK 3 5 2.2800 - 2.1100 1.00 9932 99 0.1383 0.1653 REMARK 3 6 2.1100 - 1.9900 1.00 9782 198 0.1440 0.1867 REMARK 3 7 1.9900 - 1.8900 1.00 9945 99 0.1467 0.1818 REMARK 3 8 1.8900 - 1.8100 1.00 9799 198 0.1466 0.1587 REMARK 3 9 1.8100 - 1.7400 1.00 9835 99 0.1569 0.1999 REMARK 3 10 1.7400 - 1.6800 1.00 9862 99 0.1672 0.1842 REMARK 3 11 1.6800 - 1.6300 1.00 9772 198 0.1813 0.1944 REMARK 3 12 1.6300 - 1.5800 1.00 9830 99 0.2045 0.2369 REMARK 3 13 1.5800 - 1.5400 1.00 9732 198 0.2288 0.2466 REMARK 3 14 1.5400 - 1.5000 1.00 9835 99 0.2667 0.3219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.147 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6171 REMARK 3 ANGLE : 0.967 8387 REMARK 3 CHIRALITY : 0.079 881 REMARK 3 PLANARITY : 0.006 1096 REMARK 3 DIHEDRAL : 13.115 2180 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0736 33.5505 42.3765 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.1817 REMARK 3 T33: 0.1983 T12: 0.0360 REMARK 3 T13: -0.0206 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2852 L22: 1.8816 REMARK 3 L33: 1.3212 L12: -0.0033 REMARK 3 L13: -0.0131 L23: 0.1277 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.0858 S13: 0.2033 REMARK 3 S21: -0.2365 S22: -0.0550 S23: -0.0220 REMARK 3 S31: -0.4593 S32: -0.0266 S33: 0.0788 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7330 29.2634 39.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.1667 REMARK 3 T33: 0.1938 T12: 0.0479 REMARK 3 T13: -0.0244 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.8216 L22: 1.4011 REMARK 3 L33: 1.9386 L12: 0.1398 REMARK 3 L13: -0.1154 L23: 0.8943 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.0419 S13: 0.1220 REMARK 3 S21: -0.2726 S22: -0.0596 S23: 0.1261 REMARK 3 S31: -0.3662 S32: -0.1267 S33: 0.0767 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9615 16.8248 32.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.1813 REMARK 3 T33: 0.1899 T12: 0.0140 REMARK 3 T13: 0.0266 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.4626 L22: 1.5354 REMARK 3 L33: 1.5576 L12: 0.0657 REMARK 3 L13: 0.0103 L23: 0.7914 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0270 S13: 0.0069 REMARK 3 S21: -0.2175 S22: 0.0211 S23: -0.0959 REMARK 3 S31: -0.1887 S32: 0.0462 S33: 0.0127 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4274 13.7376 53.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1834 REMARK 3 T33: 0.1708 T12: 0.0089 REMARK 3 T13: -0.0143 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.0194 L22: 1.1845 REMARK 3 L33: 1.4130 L12: 0.1177 REMARK 3 L13: -0.1377 L23: 0.2048 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.1263 S13: -0.0857 REMARK 3 S21: 0.0919 S22: -0.0378 S23: -0.0063 REMARK 3 S31: 0.0328 S32: -0.0711 S33: 0.0399 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0455 51.9810 4.2475 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.3305 REMARK 3 T33: 0.2967 T12: 0.0365 REMARK 3 T13: -0.0112 T23: 0.0567 REMARK 3 L TENSOR REMARK 3 L11: 1.0549 L22: 0.8150 REMARK 3 L33: 1.4383 L12: -0.2512 REMARK 3 L13: 0.4019 L23: 0.1524 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.1296 S13: 0.0557 REMARK 3 S21: -0.0004 S22: -0.0917 S23: -0.3965 REMARK 3 S31: 0.1174 S32: 0.5197 S33: 0.0158 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5446 63.4137 0.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.1727 REMARK 3 T33: 0.2187 T12: -0.0147 REMARK 3 T13: -0.0303 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.0964 L22: 1.0080 REMARK 3 L33: 3.5919 L12: -0.1866 REMARK 3 L13: 0.5116 L23: -0.7820 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0620 S13: 0.1335 REMARK 3 S21: 0.0632 S22: -0.0672 S23: -0.1294 REMARK 3 S31: -0.2184 S32: 0.2289 S33: 0.1105 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7394 48.5316 -8.4519 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1734 REMARK 3 T33: 0.1847 T12: 0.0245 REMARK 3 T13: 0.0063 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.2654 L22: 1.1106 REMARK 3 L33: 1.2425 L12: 0.5979 REMARK 3 L13: 0.3814 L23: 0.1650 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.0234 S13: 0.0314 REMARK 3 S21: -0.0766 S22: -0.0296 S23: -0.0401 REMARK 3 S31: 0.0556 S32: 0.0514 S33: 0.0570 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6310 36.0477 -3.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.1140 REMARK 3 T33: 0.1710 T12: -0.0048 REMARK 3 T13: -0.0042 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 8.6821 L22: 2.1510 REMARK 3 L33: 2.5699 L12: 1.0292 REMARK 3 L13: 0.4129 L23: 0.5230 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0788 S13: -0.4268 REMARK 3 S21: 0.0185 S22: -0.0301 S23: -0.0279 REMARK 3 S31: 0.3824 S32: -0.1123 S33: 0.0653 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8322 47.7101 13.6016 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.2650 REMARK 3 T33: 0.2132 T12: 0.0023 REMARK 3 T13: -0.0073 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.8539 L22: 1.0697 REMARK 3 L33: 1.5634 L12: -0.0013 REMARK 3 L13: -0.1972 L23: -0.2741 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.2042 S13: -0.0662 REMARK 3 S21: 0.1437 S22: 0.0185 S23: 0.0751 REMARK 3 S31: 0.0883 S32: -0.0925 S33: -0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.774901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.07386 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 1.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3VDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 37 MG/ML IN 10 MM MOPS BUFFER REMARK 280 AT PH 7, 50 MM NACL WAS MIXED WITH AN EQUAL VOLUME OF RESERVOIR REMARK 280 SOLUTION WITH 0.15M DL MALIC ACID, 20% PEG 3350. SAMPLE WAS REMARK 280 CRYOPROTECTED WITH RESERVOIR SUPPLEMENTED TO 35% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.42500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.42500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.82000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 ASN B 13 REMARK 465 LEU B 14 REMARK 465 TYR B 15 REMARK 465 VAL B 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 10 O HOH A 502 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -98.03 -123.90 REMARK 500 HIS A 122 -92.85 -105.86 REMARK 500 LYS A 129 116.68 -161.64 REMARK 500 ASP A 130 -122.98 56.71 REMARK 500 ASN A 174 -82.95 -86.84 REMARK 500 CYS A 184 -55.65 77.97 REMARK 500 ARG A 261 -59.85 -155.27 REMARK 500 PHE A 297 -65.23 -126.02 REMARK 500 SER A 310 -153.64 -176.61 REMARK 500 ARG A 324 60.23 -151.04 REMARK 500 MET A 350 -145.65 55.49 REMARK 500 LEU A 352 -69.63 64.57 REMARK 500 GLN B 17 109.21 71.23 REMARK 500 THR B 38 -97.94 -123.82 REMARK 500 HIS B 122 -91.57 -104.19 REMARK 500 ASP B 130 -123.31 56.05 REMARK 500 ASN B 174 -83.40 -85.70 REMARK 500 CYS B 184 -54.69 77.86 REMARK 500 SER B 187 5.86 81.37 REMARK 500 ARG B 261 -61.00 -155.18 REMARK 500 PHE B 297 -66.62 -128.55 REMARK 500 SER B 310 -145.87 -174.93 REMARK 500 ARG B 324 62.02 -152.45 REMARK 500 MET B 350 -146.92 57.51 REMARK 500 LEU B 352 -66.26 61.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1015 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 931 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 48 O REMARK 620 2 HOH A 679 O 105.0 REMARK 620 3 HOH A 854 O 86.8 81.7 REMARK 620 4 HOH A 857 O 85.9 81.2 159.1 REMARK 620 5 HOH A 870 O 92.0 162.8 98.0 101.8 REMARK 620 6 HOH A 892 O 167.7 87.3 94.1 97.2 75.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IM4 RELATED DB: PDB REMARK 900 RELATED ID: 6MQ4 RELATED DB: PDB REMARK 900 RELATED ID: 6PZ7 RELATED DB: PDB REMARK 900 RELATED ID: 6Q1I RELATED DB: PDB REMARK 900 RELATED ID: 6UI3 RELATED DB: PDB REMARK 900 RELATED ID: 6WQP RELATED DB: PDB REMARK 900 RELATED ID: 6WQY RELATED DB: PDB REMARK 900 RELATED ID: 6XRK RELATED DB: PDB REMARK 900 RELATED ID: 6XSU RELATED DB: PDB DBREF 6XSO A 19 378 UNP H2BCH8 H2BCH8_9BACT 24 383 DBREF 6XSO B 19 378 UNP H2BCH8 H2BCH8_9BACT 24 383 SEQADV 6XSO MET A 1 UNP H2BCH8 INITIATING METHIONINE SEQADV 6XSO GLY A 2 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO SER A 3 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 4 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 5 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 6 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 7 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 8 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 9 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 10 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS A 11 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO GLU A 12 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO ASN A 13 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO LEU A 14 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO TYR A 15 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO PHE A 16 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO GLN A 17 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO SER A 18 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO VAL A 379 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO MET B 1 UNP H2BCH8 INITIATING METHIONINE SEQADV 6XSO GLY B 2 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO SER B 3 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 4 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 5 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 6 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 7 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 8 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 9 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 10 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO HIS B 11 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO GLU B 12 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO ASN B 13 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO LEU B 14 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO TYR B 15 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO PHE B 16 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO GLN B 17 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO SER B 18 UNP H2BCH8 EXPRESSION TAG SEQADV 6XSO VAL B 379 UNP H2BCH8 EXPRESSION TAG SEQRES 1 A 379 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN SEQRES 2 A 379 LEU TYR PHE GLN SER PHE GLU THR ALA THR ASN ALA VAL SEQRES 3 A 379 LYS ASN MET GLY VAL GLY TRP ASN LEU GLY ASN THR LEU SEQRES 4 A 379 ASP ALA ASN ASP ALA THR LYS THR TRP THR THR THR VAL SEQRES 5 A 379 GLN HIS GLU THR CYS TRP GLY GLN PRO VAL THR LYS PRO SEQRES 6 A 379 GLU LEU PHE LYS MET MET LYS GLU ALA GLY PHE GLY ALA SEQRES 7 A 379 ILE ARG VAL PRO VAL THR TRP TYR GLN GLU MET ASP ALA SEQRES 8 A 379 ASN GLY LYS VAL ASN GLU ALA TRP MET LYS ARG VAL LYS SEQRES 9 A 379 GLU VAL VAL ASP TYR VAL VAL ALA GLN ASP MET TYR CYS SEQRES 10 A 379 ILE ILE ASN VAL HIS HIS ASP THR GLY ALA ASP LYS ASP SEQRES 11 A 379 ALA PHE LYS SER TRP ILE LYS ALA ASP GLU ALA ASN TYR SEQRES 12 A 379 ASN GLN ASN LYS ALA LYS TYR GLU TYR LEU TRP ARG GLN SEQRES 13 A 379 ILE ALA GLU ALA PHE LYS ASP TYR GLY ASP LYS VAL LEU SEQRES 14 A 379 PHE GLU SER TYR ASN GLU MET LEU ASP LYS LEU ASN SER SEQRES 15 A 379 TRP CYS PHE ALA SER PHE ALA ALA SER GLY GLN TYR ASP SEQRES 16 A 379 ALA THR VAL ALA THR SER ALA TYR ASN ALA ILE ASN GLY SEQRES 17 A 379 TYR ALA ARG SER PHE VAL ASN ALA VAL ARG GLY THR GLY SEQRES 18 A 379 GLY ASN ASN VAL ARG ARG ASN LEU ILE VAL ASN THR TYR SEQRES 19 A 379 ALA ALA ALA ASN GLY SER GLY ASN TRP ASN ALA HIS LEU SEQRES 20 A 379 LYS ASP PRO LEU SER LYS LEU VAL ILE PRO GLN GLY GLU SEQRES 21 A 379 ARG ASP HIS ILE ALA VAL GLN VAL HIS ALA TYR PRO THR SEQRES 22 A 379 ILE ALA GLY LYS THR ILE SER ALA ILE ARG THR ASP THR SEQRES 23 A 379 ARG ASP LEU MET ASN GLY LEU ASN THR TYR PHE VAL SER SEQRES 24 A 379 LYS GLY ILE PRO VAL ILE ILE GLY GLU TRP SER THR SER SEQRES 25 A 379 ASN VAL ASP ALA LYS GLU THR ASP TYR ASP ALA ARG LYS SEQRES 26 A 379 SER LEU MET PHE GLN PHE VAL ASP ASP PHE VAL ALA GLN SEQRES 27 A 379 ALA LYS ALA LEU GLY ILE ALA THR PHE TYR TRP MET GLY SEQRES 28 A 379 LEU SER ASP GLY ALA SER ARG THR MET PRO SER PHE ASN SEQRES 29 A 379 GLN ALA ASP LEU ALA GLU ARG ILE ALA LYS ALA TYR HIS SEQRES 30 A 379 GLY VAL SEQRES 1 B 379 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN SEQRES 2 B 379 LEU TYR PHE GLN SER PHE GLU THR ALA THR ASN ALA VAL SEQRES 3 B 379 LYS ASN MET GLY VAL GLY TRP ASN LEU GLY ASN THR LEU SEQRES 4 B 379 ASP ALA ASN ASP ALA THR LYS THR TRP THR THR THR VAL SEQRES 5 B 379 GLN HIS GLU THR CYS TRP GLY GLN PRO VAL THR LYS PRO SEQRES 6 B 379 GLU LEU PHE LYS MET MET LYS GLU ALA GLY PHE GLY ALA SEQRES 7 B 379 ILE ARG VAL PRO VAL THR TRP TYR GLN GLU MET ASP ALA SEQRES 8 B 379 ASN GLY LYS VAL ASN GLU ALA TRP MET LYS ARG VAL LYS SEQRES 9 B 379 GLU VAL VAL ASP TYR VAL VAL ALA GLN ASP MET TYR CYS SEQRES 10 B 379 ILE ILE ASN VAL HIS HIS ASP THR GLY ALA ASP LYS ASP SEQRES 11 B 379 ALA PHE LYS SER TRP ILE LYS ALA ASP GLU ALA ASN TYR SEQRES 12 B 379 ASN GLN ASN LYS ALA LYS TYR GLU TYR LEU TRP ARG GLN SEQRES 13 B 379 ILE ALA GLU ALA PHE LYS ASP TYR GLY ASP LYS VAL LEU SEQRES 14 B 379 PHE GLU SER TYR ASN GLU MET LEU ASP LYS LEU ASN SER SEQRES 15 B 379 TRP CYS PHE ALA SER PHE ALA ALA SER GLY GLN TYR ASP SEQRES 16 B 379 ALA THR VAL ALA THR SER ALA TYR ASN ALA ILE ASN GLY SEQRES 17 B 379 TYR ALA ARG SER PHE VAL ASN ALA VAL ARG GLY THR GLY SEQRES 18 B 379 GLY ASN ASN VAL ARG ARG ASN LEU ILE VAL ASN THR TYR SEQRES 19 B 379 ALA ALA ALA ASN GLY SER GLY ASN TRP ASN ALA HIS LEU SEQRES 20 B 379 LYS ASP PRO LEU SER LYS LEU VAL ILE PRO GLN GLY GLU SEQRES 21 B 379 ARG ASP HIS ILE ALA VAL GLN VAL HIS ALA TYR PRO THR SEQRES 22 B 379 ILE ALA GLY LYS THR ILE SER ALA ILE ARG THR ASP THR SEQRES 23 B 379 ARG ASP LEU MET ASN GLY LEU ASN THR TYR PHE VAL SER SEQRES 24 B 379 LYS GLY ILE PRO VAL ILE ILE GLY GLU TRP SER THR SER SEQRES 25 B 379 ASN VAL ASP ALA LYS GLU THR ASP TYR ASP ALA ARG LYS SEQRES 26 B 379 SER LEU MET PHE GLN PHE VAL ASP ASP PHE VAL ALA GLN SEQRES 27 B 379 ALA LYS ALA LEU GLY ILE ALA THR PHE TYR TRP MET GLY SEQRES 28 B 379 LEU SER ASP GLY ALA SER ARG THR MET PRO SER PHE ASN SEQRES 29 B 379 GLN ALA ASP LEU ALA GLU ARG ILE ALA LYS ALA TYR HIS SEQRES 30 B 379 GLY VAL HET LMR A 401 13 HET NA A 402 1 HET PEG A 403 17 HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN LMR L-MALATE FORMUL 3 LMR C4 H6 O5 FORMUL 4 NA NA 1+ FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *1048(H2 O) HELIX 1 AA1 HIS A 8 ASN A 13 5 6 HELIX 2 AA2 THR A 21 MET A 29 1 9 HELIX 3 AA3 THR A 50 THR A 56 1 7 HELIX 4 AA4 PRO A 65 ALA A 74 1 10 HELIX 5 AA5 TRP A 85 MET A 89 5 5 HELIX 6 AA6 ASN A 96 ALA A 112 1 17 HELIX 7 AA7 ASP A 139 LYS A 162 1 24 HELIX 8 AA8 ALA A 190 TYR A 194 5 5 HELIX 9 AA9 ASP A 195 THR A 220 1 26 HELIX 10 AB1 GLY A 221 ARG A 226 5 6 HELIX 11 AB2 TYR A 234 ALA A 237 5 4 HELIX 12 AB3 LYS A 248 LYS A 253 1 6 HELIX 13 AB4 THR A 278 PHE A 297 1 20 HELIX 14 AB5 VAL A 298 GLY A 301 5 4 HELIX 15 AB6 THR A 319 ARG A 324 1 6 HELIX 16 AB7 ARG A 324 LEU A 342 1 19 HELIX 17 AB8 ASP A 354 MET A 360 5 7 HELIX 18 AB9 GLN A 365 GLY A 378 1 14 HELIX 19 AC1 HIS B 8 GLU B 12 5 5 HELIX 20 AC2 THR B 21 MET B 29 1 9 HELIX 21 AC3 THR B 50 THR B 56 1 7 HELIX 22 AC4 LYS B 64 ALA B 74 1 11 HELIX 23 AC5 TRP B 85 MET B 89 5 5 HELIX 24 AC6 ASN B 96 GLN B 113 1 18 HELIX 25 AC7 ASP B 139 PHE B 161 1 23 HELIX 26 AC8 ALA B 190 TYR B 194 5 5 HELIX 27 AC9 ASP B 195 GLY B 219 1 25 HELIX 28 AD1 THR B 220 ARG B 226 5 7 HELIX 29 AD2 TYR B 234 ALA B 237 5 4 HELIX 30 AD3 LYS B 248 LYS B 253 1 6 HELIX 31 AD4 THR B 278 PHE B 297 1 20 HELIX 32 AD5 VAL B 298 GLY B 301 5 4 HELIX 33 AD6 THR B 319 ARG B 324 1 6 HELIX 34 AD7 ARG B 324 LEU B 342 1 19 HELIX 35 AD8 ASP B 354 MET B 360 5 7 HELIX 36 AD9 GLN B 365 GLY B 378 1 14 SHEET 1 AA1 9 VAL A 31 ASN A 34 0 SHEET 2 AA1 9 ALA A 78 VAL A 81 1 O ARG A 80 N TRP A 33 SHEET 3 AA1 9 TYR A 116 ILE A 119 1 O ILE A 118 N VAL A 81 SHEET 4 AA1 9 VAL A 168 GLU A 171 1 O LEU A 169 N CYS A 117 SHEET 5 AA1 9 LEU A 229 ASN A 232 1 O ILE A 230 N PHE A 170 SHEET 6 AA1 9 ILE A 264 ALA A 270 1 O ALA A 265 N VAL A 231 SHEET 7 AA1 9 VAL A 304 TRP A 309 1 O ILE A 305 N VAL A 266 SHEET 8 AA1 9 ALA A 345 TRP A 349 1 O ALA A 345 N ILE A 306 SHEET 9 AA1 9 VAL A 31 ASN A 34 1 N GLY A 32 O THR A 346 SHEET 1 AA2 9 VAL B 31 ASN B 34 0 SHEET 2 AA2 9 ALA B 78 VAL B 81 1 O ARG B 80 N TRP B 33 SHEET 3 AA2 9 TYR B 116 ASN B 120 1 O ILE B 118 N VAL B 81 SHEET 4 AA2 9 VAL B 168 GLU B 171 1 O LEU B 169 N CYS B 117 SHEET 5 AA2 9 LEU B 229 ASN B 232 1 O ILE B 230 N PHE B 170 SHEET 6 AA2 9 ILE B 264 ALA B 270 1 O ALA B 265 N VAL B 231 SHEET 7 AA2 9 VAL B 304 TRP B 309 1 O ILE B 305 N VAL B 266 SHEET 8 AA2 9 ALA B 345 TRP B 349 1 O ALA B 345 N ILE B 306 SHEET 9 AA2 9 VAL B 31 ASN B 34 1 N GLY B 32 O THR B 346 LINK O TRP A 48 NA NA A 402 1555 1555 2.28 LINK NA NA A 402 O HOH A 679 1555 1555 2.31 LINK NA NA A 402 O HOH A 854 1555 1555 2.39 LINK NA NA A 402 O HOH A 857 1555 1555 2.47 LINK NA NA A 402 O HOH A 870 1555 1555 2.43 LINK NA NA A 402 O HOH A 892 1555 1555 2.25 CISPEP 1 MET A 360 PRO A 361 0 -5.54 CISPEP 2 MET B 360 PRO B 361 0 -4.36 CISPEP 3 MET B 360 PRO B 361 0 -4.76 SITE 1 AC1 7 ARG A 324 HOH A 621 HOH A 786 HOH A 839 SITE 2 AC1 7 GLY B 276 ARG B 324 HOH B 545 SITE 1 AC2 6 TRP A 48 HOH A 679 HOH A 854 HOH A 857 SITE 2 AC2 6 HOH A 870 HOH A 892 SITE 1 AC3 8 TYR A 86 TRP A 135 ASN A 146 LYS A 149 SITE 2 AC3 8 HOH A 559 HOH A 597 HOH A 703 HOH A 705 CRYST1 55.640 91.890 170.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005853 0.00000