HEADER OXIDOREDUCTASE/INHIBITOR 16-JUL-20 6XSQ TITLE CRYSTAL STRUCTURE OF E.COLI DSBA IN COMPLEX WITH 2-(6-(3- TITLE 2 METHOXYPHENYL)-2-(4-METHOXYPHENYL)BENZOFURAN-3-YL)ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, DISULFIDE OXIDOREDUCTASE, FRAGMENTS, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,B.HERAS REVDAT 3 18-OCT-23 6XSQ 1 REMARK REVDAT 2 25-AUG-21 6XSQ 1 JRNL REVDAT 1 11-AUG-21 6XSQ 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,R.DHOUIB,M.TOTSIKA, JRNL AUTH 2 M.J.SCANLON,B.HERAS,B.M.ABBOTT JRNL TITL ELABORATION OF A BENZOFURAN SCAFFOLD AND EVALUATION OF JRNL TITL 2 BINDING AFFINITY AND INHIBITION OF ESCHERICHIA COLI DSBA: A JRNL TITL 3 FRAGMENT-BASED DRUG DESIGN APPROACH TO NOVEL ANTIVIRULENCE JRNL TITL 4 COMPOUNDS. JRNL REF BIOORG.MED.CHEM. V. 45 16315 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 34364222 JRNL DOI 10.1016/J.BMC.2021.116315 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8200 - 4.6000 0.99 2409 151 0.1544 0.1718 REMARK 3 2 4.6000 - 3.6500 1.00 2365 156 0.1573 0.2061 REMARK 3 3 3.6500 - 3.1900 1.00 2340 138 0.1912 0.2769 REMARK 3 4 3.1900 - 2.9000 1.00 2369 129 0.2193 0.2735 REMARK 3 5 2.9000 - 2.6900 1.00 2359 154 0.2332 0.2667 REMARK 3 6 2.6900 - 2.5300 1.00 2354 121 0.2338 0.3120 REMARK 3 7 2.5300 - 2.4000 1.00 2343 139 0.2341 0.2792 REMARK 3 8 2.4000 - 2.3000 1.00 2361 119 0.2264 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2992 REMARK 3 ANGLE : 1.027 4062 REMARK 3 CHIRALITY : 0.052 444 REMARK 3 PLANARITY : 0.006 529 REMARK 3 DIHEDRAL : 12.551 400 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1504 -9.7920 1.0171 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2369 REMARK 3 T33: 0.1993 T12: -0.0375 REMARK 3 T13: -0.0106 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.5967 L22: 3.8855 REMARK 3 L33: 3.2056 L12: 0.0391 REMARK 3 L13: 1.4425 L23: 2.3979 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: 0.3095 S13: -0.1307 REMARK 3 S21: -0.4668 S22: 0.0635 S23: 0.0547 REMARK 3 S31: -0.1365 S32: 0.2477 S33: 0.0144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8300 -5.6688 9.5861 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.2115 REMARK 3 T33: 0.1621 T12: -0.0302 REMARK 3 T13: -0.0295 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.7965 L22: 2.3378 REMARK 3 L33: 2.0929 L12: 0.3850 REMARK 3 L13: 0.7326 L23: 1.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: 0.0430 S13: -0.0013 REMARK 3 S21: -0.1067 S22: 0.0396 S23: -0.0094 REMARK 3 S31: -0.0612 S32: 0.1031 S33: 0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2234 9.5641 21.1957 REMARK 3 T TENSOR REMARK 3 T11: 0.5708 T22: 0.3727 REMARK 3 T33: 0.5453 T12: 0.1707 REMARK 3 T13: 0.0274 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.0837 L22: 4.2860 REMARK 3 L33: 4.5766 L12: 0.7958 REMARK 3 L13: 0.7923 L23: 2.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0056 S13: 0.4541 REMARK 3 S21: -0.9789 S22: -0.2319 S23: 0.5003 REMARK 3 S31: -0.9526 S32: -0.7682 S33: 0.3392 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6109 -7.4523 22.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2402 REMARK 3 T33: 0.3886 T12: -0.0165 REMARK 3 T13: 0.0699 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.7509 L22: 3.0493 REMARK 3 L33: 3.7724 L12: 0.4449 REMARK 3 L13: 1.1971 L23: 2.2929 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: -0.0655 S13: 0.1734 REMARK 3 S21: 0.0807 S22: -0.1211 S23: 0.4313 REMARK 3 S31: -0.1949 S32: -0.2953 S33: -0.0648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6687 -20.7299 14.8312 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.2006 REMARK 3 T33: 0.2514 T12: -0.0445 REMARK 3 T13: 0.0034 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.8342 L22: 4.6277 REMARK 3 L33: 3.8829 L12: 0.3712 REMARK 3 L13: -0.7837 L23: 0.9373 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.0056 S13: -0.2191 REMARK 3 S21: -0.1592 S22: -0.1038 S23: 0.0840 REMARK 3 S31: -0.1637 S32: 0.1094 S33: 0.0436 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0456 -27.4121 12.1028 REMARK 3 T TENSOR REMARK 3 T11: 0.2931 T22: 0.3107 REMARK 3 T33: 0.3473 T12: -0.1090 REMARK 3 T13: -0.0229 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 5.4083 L22: 3.9769 REMARK 3 L33: 5.0134 L12: 0.7973 REMARK 3 L13: 0.7555 L23: 1.4521 REMARK 3 S TENSOR REMARK 3 S11: -0.1587 S12: 0.1106 S13: -0.4768 REMARK 3 S21: -0.3860 S22: -0.1052 S23: 0.3837 REMARK 3 S31: 0.4989 S32: -0.5079 S33: 0.1812 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6883 -8.7919 8.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.4537 T22: 0.4288 REMARK 3 T33: 0.4481 T12: 0.1405 REMARK 3 T13: -0.1042 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.8222 L22: 6.1698 REMARK 3 L33: 5.2421 L12: 0.0163 REMARK 3 L13: -1.0026 L23: -0.1724 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.4990 S13: 0.4960 REMARK 3 S21: -0.7879 S22: -0.1454 S23: 1.3050 REMARK 3 S31: -0.6485 S32: -0.9897 S33: 0.0112 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4703 2.7723 17.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.5858 T22: 0.2596 REMARK 3 T33: 0.5152 T12: 0.0886 REMARK 3 T13: 0.0666 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 3.4355 L22: 2.7939 REMARK 3 L33: 6.8006 L12: 0.9504 REMARK 3 L13: -0.5513 L23: 1.2510 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.2219 S13: 0.4220 REMARK 3 S21: -0.9931 S22: 0.0769 S23: 0.1754 REMARK 3 S31: -1.1609 S32: -0.6789 S33: 0.0283 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6135 5.2246 27.1393 REMARK 3 T TENSOR REMARK 3 T11: 0.5214 T22: 0.3979 REMARK 3 T33: 0.4826 T12: -0.1072 REMARK 3 T13: 0.1599 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.7246 L22: 4.8404 REMARK 3 L33: 3.8584 L12: 0.1492 REMARK 3 L13: -0.5939 L23: -4.1475 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: -0.2044 S13: 0.1716 REMARK 3 S21: -0.2469 S22: -0.2857 S23: -0.6098 REMARK 3 S31: -0.5241 S32: 1.3220 S33: -0.0218 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7275 3.6876 30.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.3696 T22: 0.1908 REMARK 3 T33: 0.4946 T12: -0.0424 REMARK 3 T13: 0.1831 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 3.8983 L22: 4.0931 REMARK 3 L33: 8.7194 L12: 1.2986 REMARK 3 L13: 0.6163 L23: 0.7950 REMARK 3 S TENSOR REMARK 3 S11: 0.2205 S12: -0.2260 S13: 0.5805 REMARK 3 S21: -0.3624 S22: -0.3652 S23: 0.0862 REMARK 3 S31: -0.1309 S32: -0.4888 S33: 0.0790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20016 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 31.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 COPPER(II) CHLORIDE, 100 MM SODIUM CACODYLATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 370 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 SER B 169 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 164 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -82.43 -95.27 REMARK 500 ASN A 162 77.47 -117.17 REMARK 500 LYS B 7 -81.20 -85.51 REMARK 500 PRO B 15 170.80 -59.94 REMARK 500 LYS B 98 -71.47 -110.30 REMARK 500 ASN B 162 72.79 -116.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 73.2 REMARK 620 3 GLU B 4 OE2 171.4 104.3 REMARK 620 4 ASP B 44 OD1 97.4 24.8 79.5 REMARK 620 5 ASP B 44 OD2 99.0 25.9 78.4 4.2 REMARK 620 N 1 2 3 4 DBREF 6XSQ A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6XSQ B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET VE7 A 201 48 HET CU B 201 1 HETNAM VE7 [6-(3-METHOXYPHENYL)-2-(4-METHOXYPHENYL)-1-BENZOFURAN- HETNAM 2 VE7 3-YL]ACETIC ACID HETNAM CU COPPER (II) ION FORMUL 3 VE7 C24 H20 O5 FORMUL 4 CU CU 2+ FORMUL 5 HOH *159(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 GLN B 146 1 19 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.07 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.06 LINK N ALA B 1 CU CU B 201 1555 1555 2.60 LINK O ALA B 1 CU CU B 201 1555 1555 2.23 LINK OE2 GLU B 4 CU CU B 201 1555 1555 2.03 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.33 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.65 CISPEP 1 VAL A 150 PRO A 151 0 -2.38 CISPEP 2 VAL B 150 PRO B 151 0 -5.39 CRYST1 117.470 63.640 74.340 90.00 125.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008513 0.000000 0.006025 0.00000 SCALE2 0.000000 0.015713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016480 0.00000