HEADER FLUORESCENT PROTEIN 22-JAN-20 6XW2 TITLE CRYSTAL STRUCTURE OF THE BRIGHT GENETICALLY ENCODED CALCIUM INDICATOR TITLE 2 NCAMP7 BASED ON MNEONGREEN FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENETICALLY ENCODED CALCIUM INDICATOR NCAMP7 BASED ON COMPND 3 MNEONGREEN FLUORESCENT PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: BRANCHIOSTOMA LANCEOLATUM; SOURCE 5 EXPRESSION_SYSTEM_COMMON: AMPHIOXUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7740 KEYWDS NCAMP7, CALCIUM SENSOR, CALCIUM INDICATOR, GENETICALLY ENCODED, KEYWDS 2 FLUORESCENT PROTEIN, MNEONGREEN, BRIGHT EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,D.A.KORZHENEVSKIY,V.A.LAZARENKO,O.M.SUBACH, AUTHOR 2 F.V.SUBACH REVDAT 3 24-JAN-24 6XW2 1 REMARK REVDAT 2 18-MAR-20 6XW2 1 JRNL REVDAT 1 29-JAN-20 6XW2 0 JRNL AUTH O.M.SUBACH,V.P.SOTSKOV,V.V.PLUSNIN,A.M.GRUZDEVA, JRNL AUTH 2 N.V.BARYKINA,O.I.IVASHKINA,K.V.ANOKHIN,A.Y.NIKOLAEVA, JRNL AUTH 3 D.A.KORZHENEVSKIY,A.V.VLASKINA,V.A.LAZARENKO,K.M.BOYKO, JRNL AUTH 4 T.V.RAKITINA,A.M.VARIZHUK,G.E.POZMOGOVA,O.V.PODGORNY, JRNL AUTH 5 K.D.PIATKEVICH,E.S.BOYDEN,F.V.SUBACH JRNL TITL NOVEL GENETICALLY ENCODED BRIGHT POSITIVE CALCIUM INDICATOR JRNL TITL 2 NCAMP7 BASED ON THE MNEONGREEN FLUORESCENT PROTEIN. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32121243 JRNL DOI 10.3390/IJMS21051644 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3200 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2801 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4282 ; 1.812 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6510 ; 1.530 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 6.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;31.247 ;22.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;13.390 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3562 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.79272 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 37.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.35 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.46 REMARK 200 R MERGE FOR SHELL (I) : 0.84200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5MWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6; 0.2M REMARK 280 AMMONIUM SULFATE; 22% PEG 2000 MME, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -41 REMARK 465 GLY A -40 REMARK 465 GLY A -39 REMARK 465 SER A -38 REMARK 465 HIS A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 GLY A -31 REMARK 465 MET A -30 REMARK 465 ALA A -29 REMARK 465 SER A -28 REMARK 465 MET A -27 REMARK 465 THR A -26 REMARK 465 GLY A -25 REMARK 465 GLY A -24 REMARK 465 GLN A -23 REMARK 465 GLN A -22 REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 ARG A -19 REMARK 465 ASP A -18 REMARK 465 LEU A -17 REMARK 465 TYR A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 ASP A -13 REMARK 465 ASP A -12 REMARK 465 LYS A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 MET A 10 REMARK 465 ALA A 294 REMARK 465 LYS A 295 REMARK 465 GLY A 296 REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 ASP A 408 REMARK 465 VAL A 409 REMARK 465 MET A 410 REMARK 465 GLY A 411 REMARK 465 MET A 412 REMARK 465 ASP A 413 REMARK 465 GLU A 414 REMARK 465 LEU A 415 REMARK 465 TYR A 416 REMARK 465 LYS A 417 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 221 NE CZ NH1 NH2 REMARK 470 LYS A 241 CD CE NZ REMARK 470 ASN A 354 OD1 ND2 REMARK 470 LYS A 356 CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LYS A 404 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 267 CD GLU A 267 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 118.23 -162.15 REMARK 500 ASN A 379 70.03 -107.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 957 DISTANCE = 7.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 169 OD1 82.5 REMARK 620 3 ASP A 171 OD1 90.3 78.4 REMARK 620 4 THR A 173 O 80.7 155.0 83.2 REMARK 620 5 GLU A 178 OE1 96.4 72.4 148.8 127.9 REMARK 620 6 GLU A 178 OE2 104.1 125.6 152.9 76.8 53.3 REMARK 620 7 HOH A 660 O 163.6 81.3 83.8 113.6 81.2 87.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 203 OD1 REMARK 620 2 ASP A 205 OD1 81.8 REMARK 620 3 ASP A 207 OD1 93.1 77.7 REMARK 620 4 THR A 209 O 85.8 151.6 77.6 REMARK 620 5 GLU A 214 OE1 98.1 129.9 151.3 77.0 REMARK 620 6 GLU A 214 OE2 86.7 77.1 154.6 127.6 53.0 REMARK 620 7 HOH A 851 O 168.3 86.5 83.4 104.3 90.2 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD1 REMARK 620 2 ASP A 242 OD1 81.6 REMARK 620 3 ASN A 244 OD1 85.5 76.2 REMARK 620 4 TYR A 246 O 86.1 154.0 80.0 REMARK 620 5 GLU A 251 OE1 96.4 73.2 148.7 131.3 REMARK 620 6 GLU A 251 OE2 103.5 126.3 156.3 78.8 53.1 REMARK 620 7 HOH A 630 O 168.2 98.1 83.0 89.3 94.8 86.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 278 OD1 81.8 REMARK 620 3 ASP A 280 OD1 83.0 79.4 REMARK 620 4 GLN A 282 O 85.7 153.5 76.0 REMARK 620 5 GLU A 287 OE1 112.4 126.0 150.7 80.3 REMARK 620 6 GLU A 287 OE2 92.3 75.0 154.3 128.9 53.6 REMARK 620 7 HOH A 722 O 160.1 85.7 79.6 99.2 87.5 99.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 DBREF 6XW2 A -41 417 PDB 6XW2 6XW2 -41 417 SEQRES 1 A 457 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 457 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 457 ASP ASP ASP ASP LYS GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 4 A 457 MET ARG SER MET VAL SER LYS GLY GLU GLU GLU ASN MET SEQRES 5 A 457 ALA SER LEU PRO ALA THR HIS GLU LEU HIS ILE PHE GLY SEQRES 6 A 457 SER ILE ASN GLY ILE ASP PHE ASP MET VAL GLY GLN GLY SEQRES 7 A 457 THR GLY ASN PRO ASN ASP GLY TYR GLU GLU LEU ASN LEU SEQRES 8 A 457 LYS SER THR MET GLY ASP LEU GLN PHE SER PRO TRP ILE SEQRES 9 A 457 LEU VAL PRO HIS ILE CR2 PHE HIS GLN TYR LEU PRO TYR SEQRES 10 A 457 PRO ASP GLY MET SER PRO PHE GLN ALA ALA MET VAL ASP SEQRES 11 A 457 GLY SER GLY TYR GLN VAL HIS ARG THR MET GLN PHE GLU SEQRES 12 A 457 ASP GLY ALA SER LEU THR VAL ASN TYR ARG TYR THR TYR SEQRES 13 A 457 GLU GLY SER HIS ILE LYS GLY GLU ALA GLN VAL GLU GLY SEQRES 14 A 457 THR GLY PHE PRO ALA ASP GLY PRO VAL MET THR ASN SER SEQRES 15 A 457 LEU THR ALA GLU ALA HIS ASP GLN LEU THR GLU GLU GLN SEQRES 16 A 457 ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP LYS SEQRES 17 A 457 ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY THR SEQRES 18 A 457 VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA GLU SEQRES 19 A 457 LEU ARG VAL MET ILE ILE GLU VAL ASP ALA ASP GLY ASP SEQRES 20 A 457 GLY THR LEU ASP PHE PRO GLU PHE LEU ALA MET MET ALA SEQRES 21 A 457 ARG LYS MET LYS TYR ARG ASP THR GLU GLU GLU ILE ARG SEQRES 22 A 457 GLU ALA PHE GLY VAL PHE ASP LYS ASP GLY ASN GLY TYR SEQRES 23 A 457 ILE GLY ALA ALA GLU LEU ARG HIS VAL MET THR ASN LEU SEQRES 24 A 457 GLY GLU LYS LEU THR ASP GLU GLU VAL GLY GLU LEU ILE SEQRES 25 A 457 ARG GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR SEQRES 26 A 457 GLU GLU PHE VAL GLN MET MET THR ALA LYS GLY GLY SER SEQRES 27 A 457 GLY GLY GLY SER SER SER ARG ARG LYS TRP ASN LYS ALA SEQRES 28 A 457 GLY HIS ALA VAL ARG ALA ILE GLY ARG LEU SER SER MET SEQRES 29 A 457 TYR PHE ALA ASP TRP CYS VAL SER LYS LYS THR CYS PRO SEQRES 30 A 457 ASN ASP LYS THR ILE VAL SER THR PHE LYS TRP ALA PHE SEQRES 31 A 457 ILE THR ASP ASN GLY LYS ARG TYR ARG SER THR ALA ARG SEQRES 32 A 457 THR THR TYR THR PHE ALA LYS PRO MET ALA ALA ASN TYR SEQRES 33 A 457 LEU LYS ASN GLN PRO MET TYR VAL PHE ARG LYS THR GLU SEQRES 34 A 457 LEU LYS HIS SER LYS THR GLU LEU ASN PHE LYS GLU TRP SEQRES 35 A 457 GLN LYS ALA PHE THR ASP VAL MET GLY MET ASP GLU LEU SEQRES 36 A 457 TYR LYS HET CR2 A 68 19 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 CA 4(CA 2+) FORMUL 10 HOH *357(H2 O) HELIX 1 AA1 SER A 59 VAL A 64 5 6 HELIX 2 AA2 PHE A 71 TYR A 74 5 4 HELIX 3 AA3 SER A 82 GLY A 91 1 10 HELIX 4 AA4 THR A 152 ASP A 167 1 16 HELIX 5 AA5 THR A 175 LEU A 186 1 12 HELIX 6 AA6 THR A 191 ASP A 203 1 13 HELIX 7 AA7 PHE A 212 ARG A 221 1 10 HELIX 8 AA8 ASP A 227 ASP A 240 1 14 HELIX 9 AA9 GLY A 248 GLY A 260 1 13 HELIX 10 AB1 THR A 264 ASP A 276 1 13 HELIX 11 AB2 TYR A 285 MET A 292 1 8 HELIX 12 AB3 SER A 302 MET A 324 1 23 HELIX 13 AB4 TYR A 325 ALA A 327 5 3 HELIX 14 AB5 ALA A 373 ASN A 379 1 7 SHEET 1 AA113 LEU A 143 THR A 144 0 SHEET 2 AA113 THR A 341 THR A 352 -1 O ILE A 351 N THR A 144 SHEET 3 AA113 ARG A 357 PHE A 368 -1 O TYR A 366 N ILE A 342 SHEET 4 AA113 TYR A 94 PHE A 102 -1 N HIS A 97 O THR A 365 SHEET 5 AA113 SER A 107 GLU A 117 -1 O VAL A 110 N ARG A 98 SHEET 6 AA113 HIS A 120 THR A 130 -1 O LYS A 122 N THR A 115 SHEET 7 AA113 THR A 16 ILE A 25 1 N PHE A 22 O VAL A 127 SHEET 8 AA113 ILE A 28 GLY A 38 -1 O GLY A 36 N HIS A 17 SHEET 9 AA113 GLU A 45 SER A 51 -1 O LYS A 50 N VAL A 33 SHEET 10 AA113 GLU A 396 PHE A 406 -1 O PHE A 399 N LEU A 47 SHEET 11 AA113 MET A 382 HIS A 392 -1 N LYS A 391 O ASN A 398 SHEET 12 AA113 CYS A 330 ASN A 338 -1 N CYS A 330 O ARG A 386 SHEET 13 AA113 THR A 341 THR A 352 -1 O VAL A 343 N THR A 335 SHEET 1 AA2 2 PRO A 76 TYR A 77 0 SHEET 2 AA2 2 GLY A 80 MET A 81 -1 O GLY A 80 N TYR A 77 SHEET 1 AA3 2 THR A 173 ILE A 174 0 SHEET 2 AA3 2 LEU A 210 ASP A 211 -1 O LEU A 210 N ILE A 174 SHEET 1 AA4 2 TYR A 246 ILE A 247 0 SHEET 2 AA4 2 VAL A 283 ASN A 284 -1 O VAL A 283 N ILE A 247 LINK C ILE A 67 N1 CR2 A 68 1555 1555 1.39 LINK C3 CR2 A 68 N PHE A 71 1555 1555 1.34 LINK OD1 ASP A 167 CA CA A 505 1555 1555 2.32 LINK OD1 ASP A 169 CA CA A 505 1555 1555 2.38 LINK OD1 ASP A 171 CA CA A 505 1555 1555 2.36 LINK O THR A 173 CA CA A 505 1555 1555 2.31 LINK OE1 GLU A 178 CA CA A 505 1555 1555 2.42 LINK OE2 GLU A 178 CA CA A 505 1555 1555 2.42 LINK OD1 ASP A 203 CA CA A 506 1555 1555 2.30 LINK OD1 ASP A 205 CA CA A 506 1555 1555 2.35 LINK OD1 ASP A 207 CA CA A 506 1555 1555 2.36 LINK O THR A 209 CA CA A 506 1555 1555 2.36 LINK OE1 GLU A 214 CA CA A 506 1555 1555 2.41 LINK OE2 GLU A 214 CA CA A 506 1555 1555 2.46 LINK OD1 ASP A 240 CA CA A 507 1555 1555 2.29 LINK OD1 ASP A 242 CA CA A 507 1555 1555 2.34 LINK OD1 ASN A 244 CA CA A 507 1555 1555 2.38 LINK O TYR A 246 CA CA A 507 1555 1555 2.28 LINK OE1 GLU A 251 CA CA A 507 1555 1555 2.41 LINK OE2 GLU A 251 CA CA A 507 1555 1555 2.39 LINK OD1 ASP A 276 CA CA A 508 1555 1555 2.31 LINK OD1 ASP A 278 CA CA A 508 1555 1555 2.33 LINK OD1 ASP A 280 CA CA A 508 1555 1555 2.36 LINK O GLN A 282 CA CA A 508 1555 1555 2.34 LINK OE1 GLU A 287 CA CA A 508 1555 1555 2.37 LINK OE2 GLU A 287 CA CA A 508 1555 1555 2.47 LINK CA CA A 505 O HOH A 660 1555 1555 2.36 LINK CA CA A 506 O HOH A 851 1555 1555 2.34 LINK CA CA A 507 O HOH A 630 1555 1555 2.41 LINK CA CA A 508 O HOH A 722 1555 1555 2.34 CISPEP 1 GLN A 380 PRO A 381 0 -10.41 SITE 1 AC1 11 THR A 191 GLU A 192 GLY A 248 ALA A 250 SITE 2 AC1 11 GLU A 251 HOH A 621 HOH A 630 HOH A 665 SITE 3 AC1 11 HOH A 704 HOH A 738 HOH A 836 SITE 1 AC2 11 CR2 A 68 HIS A 72 ARG A 98 SER A 332 SITE 2 AC2 11 LYS A 334 SER A 344 PHE A 346 THR A 364 SITE 3 AC2 11 TYR A 366 ARG A 386 HOH A 634 SITE 1 AC3 5 TRP A 61 THR A 144 ALA A 145 HIS A 392 SITE 2 AC3 5 HOH A 792 SITE 1 AC4 6 LYS A 222 ASP A 227 THR A 228 ARG A 357 SITE 2 AC4 6 HOH A 601 HOH A 720 SITE 1 AC5 6 ASP A 167 ASP A 169 ASP A 171 THR A 173 SITE 2 AC5 6 GLU A 178 HOH A 660 SITE 1 AC6 6 ASP A 203 ASP A 205 ASP A 207 THR A 209 SITE 2 AC6 6 GLU A 214 HOH A 851 SITE 1 AC7 6 ASP A 240 ASP A 242 ASN A 244 TYR A 246 SITE 2 AC7 6 GLU A 251 HOH A 630 SITE 1 AC8 6 ASP A 276 ASP A 278 ASP A 280 GLN A 282 SITE 2 AC8 6 GLU A 287 HOH A 722 CRYST1 61.900 65.700 93.020 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010750 0.00000