HEADER PROTEIN BINDING 23-JAN-20 6XWD TITLE 14-3-3 SIGMA BOUND TO CANONICAL MONO-PHOSPHORYLATED AMINOPEPTIDASE N TITLE 2 (APN, CD13) BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AMINO PEPTIDASE N 38-46; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS EXTRACELLULAR 14-3-3 PHOSPHORYLATION AMINOPEPTIDASE N CD13, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.KIEHSTALLER,S.HENNIG REVDAT 4 24-JAN-24 6XWD 1 REMARK REVDAT 3 06-JAN-21 6XWD 1 JRNL REVDAT 2 11-NOV-20 6XWD 1 JRNL REVDAT 1 04-NOV-20 6XWD 0 JRNL AUTH S.KIEHSTALLER,C.OTTMANN,S.HENNIG JRNL TITL MMP ACTIVATION-ASSOCIATED AMINOPEPTIDASE N REVEALS A JRNL TITL 2 BIVALENT 14-3-3 BINDING MOTIF. JRNL REF J.BIOL.CHEM. V. 295 18266 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33109610 JRNL DOI 10.1074/JBC.RA120.014708 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.368 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.004 REMARK 3 FREE R VALUE TEST SET COUNT : 1907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3687 - 3.8555 1.00 2738 145 0.1535 0.1701 REMARK 3 2 3.8555 - 3.0604 1.00 2652 140 0.1392 0.1691 REMARK 3 3 3.0604 - 2.6736 1.00 2598 136 0.1720 0.2115 REMARK 3 4 2.6736 - 2.4292 1.00 2604 138 0.1683 0.2167 REMARK 3 5 2.4292 - 2.2551 1.00 2582 136 0.1604 0.1748 REMARK 3 6 2.2551 - 2.1221 1.00 2576 135 0.1557 0.2025 REMARK 3 7 2.1221 - 2.0158 1.00 2560 135 0.1571 0.1714 REMARK 3 8 2.0158 - 1.9281 1.00 2571 135 0.1645 0.2174 REMARK 3 9 1.9281 - 1.8539 1.00 2568 135 0.1872 0.2289 REMARK 3 10 1.8539 - 1.7899 1.00 2550 135 0.2235 0.2546 REMARK 3 11 1.7899 - 1.7339 1.00 2551 134 0.2550 0.2823 REMARK 3 12 1.7339 - 1.6844 1.00 2578 136 0.2106 0.2401 REMARK 3 13 1.6844 - 1.6400 1.00 2524 133 0.2149 0.2346 REMARK 3 14 1.6400 - 1.6000 1.00 2554 134 0.2260 0.2341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2130 REMARK 3 ANGLE : 0.778 2915 REMARK 3 CHIRALITY : 0.041 323 REMARK 3 PLANARITY : 0.005 386 REMARK 3 DIHEDRAL : 1.927 1779 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292104755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.911650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.369 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.3 0.19 M CACL2 5% REMARK 280 GLYCEROL 28% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.80000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.80000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 794 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 67 OE1 NE2 REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 LYS A 214 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 659 O HOH A 692 2.14 REMARK 500 O HOH A 412 O HOH A 424 2.16 REMARK 500 NE2 GLN A 8 O HOH A 401 2.18 REMARK 500 O HOH A 715 O HOH A 772 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 767 O HOH A 792 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 75.07 -106.32 REMARK 500 HIS A 106 42.06 -142.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 794 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 795 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH P 120 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH P 121 DISTANCE = 9.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 469 O 76.8 76.8 REMARK 620 4 HOH A 469 O 81.7 81.7 150.6 REMARK 620 5 HOH A 659 O 84.1 84.1 132.5 63.6 REMARK 620 6 HOH A 659 O 140.2 140.2 63.6 132.5 125.8 REMARK 620 7 HOH A 692 O 84.1 84.1 86.2 111.6 48.5 97.0 REMARK 620 8 HOH A 692 O 165.9 165.9 111.6 86.2 97.0 48.5 107.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 8 OE1 REMARK 620 2 GLN A 8 OE1 11.1 REMARK 620 3 LYS A 77 O 29.9 34.8 REMARK 620 4 GLU A 80 OE1 32.0 36.6 2.1 REMARK 620 5 GLU A 80 OE2 34.2 39.1 4.4 2.5 REMARK 620 6 HOH A 405 O 34.0 39.7 5.4 4.5 3.0 REMARK 620 7 HOH A 514 O 34.7 39.4 4.8 2.7 0.8 3.8 REMARK 620 8 HOH A 635 O 31.9 37.2 2.5 2.0 2.5 2.9 3.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 47.8 REMARK 620 3 GLU A 110 O 80.8 79.6 REMARK 620 4 GLU A 110 O 88.6 88.5 9.3 REMARK 620 5 GLU A 188 OE2 118.4 86.7 47.2 44.4 REMARK 620 6 HOH A 442 O 78.0 125.6 88.6 85.4 121.9 REMARK 620 7 HOH A 479 O 168.4 141.8 106.0 97.4 72.3 92.6 REMARK 620 8 HOH A 648 O 80.9 84.7 161.1 169.5 142.6 92.1 92.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE1 REMARK 620 2 GLU A 161 O 71.2 REMARK 620 3 HOH A 453 O 70.5 0.9 REMARK 620 4 HOH A 542 O 71.0 2.8 3.4 REMARK 620 5 HOH A 615 O 72.1 3.5 4.3 1.3 REMARK 620 6 HOH A 617 O 68.9 2.5 2.3 2.7 4.0 REMARK 620 7 HOH A 643 O 71.7 1.7 2.5 1.5 1.9 2.9 REMARK 620 8 HOH A 657 O 69.9 3.0 3.4 1.0 2.3 2.0 2.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 665 O REMARK 620 2 HOH A 730 O 82.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP P 43 REMARK 800 through SER P 44 bound to ASN P 42 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6XW3 RELATED DB: PDB DBREF 6XWD A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 6XWD P 38 46 PDB 6XWD 6XWD 38 46 SEQADV 6XWD GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6XWD ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6XWD MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6XWD GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6XWD SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 P 9 ASN LYS ASN ALA ASN SEP SER PRO VAL HET SEP P 43 10 HET NA A 301 1 HET NA A 302 1 HET CA A 303 1 HET MG A 304 1 HET MG A 305 1 HETNAM SEP PHOSPHOSERINE HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 NA 2(NA 1+) FORMUL 5 CA CA 2+ FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *419(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 ASP A 113 ALA A 135 1 23 HELIX 6 AA6 ASP A 139 MET A 162 1 24 HELIX 7 AA7 ASN A 166 ILE A 183 1 18 HELIX 8 AA8 SER A 186 LEU A 205 1 20 HELIX 9 AA9 HIS A 206 LEU A 208 5 3 HELIX 10 AB1 SER A 209 THR A 231 1 23 LINK C ASN P 42 N SEP P 43 1555 1555 1.33 LINK C SEP P 43 N ASER P 44 1555 1555 1.33 LINK C SEP P 43 N CSER P 44 1555 1555 1.33 LINK OE1 GLU A 2 MG MG A 305 1555 1555 2.42 LINK OE1 GLU A 2 MG MG A 305 1555 3655 2.42 LINK OE1AGLN A 8 NA NA A 301 1555 4555 2.70 LINK OE1BGLN A 8 NA NA A 301 1555 4555 2.49 LINK OE1 GLU A 35 MG MG A 304 1555 1555 2.41 LINK OE2 GLU A 35 MG MG A 304 1555 1555 2.90 LINK OE1 GLU A 75 NA NA A 302 1555 7554 2.41 LINK O LYS A 77 NA NA A 301 1555 1555 2.39 LINK OE1 GLU A 80 NA NA A 301 1555 1555 2.42 LINK OE2 GLU A 80 NA NA A 301 1555 1555 2.81 LINK O AGLU A 110 MG MG A 304 1555 1555 2.36 LINK O BGLU A 110 MG MG A 304 1555 1555 2.32 LINK O GLU A 161 NA NA A 302 1555 1555 2.30 LINK OE2 GLU A 188 MG MG A 304 1555 6544 2.41 LINK NA NA A 301 O HOH A 405 1555 4555 2.52 LINK NA NA A 301 O HOH A 514 1555 1555 2.95 LINK NA NA A 301 O HOH A 635 1555 1555 2.48 LINK NA NA A 302 O HOH A 453 1555 7544 2.51 LINK NA NA A 302 O HOH A 542 1555 1555 2.44 LINK NA NA A 302 O HOH A 615 1555 7544 2.63 LINK NA NA A 302 O HOH A 617 1555 1555 2.47 LINK NA NA A 302 O HOH A 643 1555 7544 2.66 LINK NA NA A 302 O HOH A 657 1555 6545 2.35 LINK CA CA A 303 O HOH A 665 1555 1555 3.02 LINK CA CA A 303 O HOH A 730 1555 1555 2.96 LINK MG MG A 304 O HOH A 442 1555 1555 2.29 LINK MG MG A 304 O HOH A 479 1555 6545 2.17 LINK MG MG A 304 O HOH A 648 1555 1555 2.38 LINK MG MG A 305 O HOH A 469 1555 1555 2.55 LINK MG MG A 305 O HOH A 469 1555 3655 2.55 LINK MG MG A 305 O HOH A 659 1555 1555 2.28 LINK MG MG A 305 O HOH A 659 1555 3655 2.28 LINK MG MG A 305 O HOH A 692 1555 1555 2.81 LINK MG MG A 305 O HOH A 692 1555 3655 2.81 CISPEP 1 SER A 105 HIS A 106 0 4.60 SITE 1 AC1 6 GLN A 8 LYS A 77 GLU A 80 HOH A 405 SITE 2 AC1 6 HOH A 514 HOH A 635 SITE 1 AC2 8 GLU A 75 GLU A 161 HOH A 453 HOH A 542 SITE 2 AC2 8 HOH A 615 HOH A 617 HOH A 643 HOH A 657 SITE 1 AC3 3 LYS A 9 HOH A 665 HOH A 730 SITE 1 AC4 6 GLU A 35 GLU A 110 GLU A 188 HOH A 442 SITE 2 AC4 6 HOH A 479 HOH A 648 SITE 1 AC5 4 GLU A 2 HOH A 469 HOH A 659 HOH A 692 SITE 1 AC6 19 LYS A 49 ARG A 56 LYS A 122 ARG A 129 SITE 2 AC6 19 TYR A 130 LEU A 174 ASN A 175 HOH A 627 SITE 3 AC6 19 LYS P 39 ALA P 41 ASN P 42 PRO P 45 SITE 4 AC6 19 VAL P 46 HOH P 101 HOH P 102 HOH P 103 SITE 5 AC6 19 HOH P 104 HOH P 107 HOH P 109 CRYST1 82.000 111.600 62.400 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016026 0.00000