HEADER PROTEIN BINDING 26-JAN-20 6XX0 TITLE CRYSTAL STRUCTURE OF NEMO IN COMPLEX WITH UBV-LIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B- COMPND 3 CELLS, KINASE GAMMA, ISOFORM CRA_B; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBV-LIN; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IKBKG, HCG_2003089; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2419741; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 2419741 KEYWDS INHIBITOR, UBIQUITIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.AKUTSU,A.SKENDEROVIC,J.GARCIA-PARDO,T.MACULINS,I.DIKIC REVDAT 3 24-JAN-24 6XX0 1 REMARK REVDAT 2 03-MAR-21 6XX0 1 JRNL REVDAT 1 03-FEB-21 6XX0 0 JRNL AUTH T.MACULINS,J.GARCIA-PARDO,A.SKENDEROVIC,J.GEBEL,M.PUTYRSKI, JRNL AUTH 2 A.VOROBYOV,P.BUSSE,G.VARGA,M.KUZIKOV,A.ZALIANI,S.RAHIGHI, JRNL AUTH 3 V.SCHAEFFER,M.J.PARNHAM,S.S.SIDHU,A.ERNST,V.DOTSCH,M.AKUTSU, JRNL AUTH 4 I.DIKIC JRNL TITL DISCOVERY OF PROTEIN-PROTEIN INTERACTION INHIBITORS BY JRNL TITL 2 INTEGRATING PROTEIN ENGINEERING AND CHEMICAL SCREENING JRNL TITL 3 PLATFORMS. JRNL REF CELL CHEM BIOL V. 27 1441 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32726587 JRNL DOI 10.1016/J.CHEMBIOL.2020.07.010 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.24000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.520 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2438 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2340 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3277 ; 1.309 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5477 ; 1.124 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;32.859 ;25.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;19.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2674 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101221 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 MAGNESIUM CHLORIDE, 0.1M TRY-HCL, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.16150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.16150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 MET A 258 REMARK 465 GLN A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 LEU A 263 REMARK 465 LYS A 264 REMARK 465 GLN A 265 REMARK 465 SER A 341 REMARK 465 LYS A 342 REMARK 465 LEU A 343 REMARK 465 LYS A 344 REMARK 465 GLY B 256 REMARK 465 PRO B 257 REMARK 465 MET B 258 REMARK 465 GLN B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 ASP B 262 REMARK 465 LEU B 263 REMARK 465 LYS B 264 REMARK 465 TYR B 340 REMARK 465 SER B 341 REMARK 465 LYS B 342 REMARK 465 LEU B 343 REMARK 465 LYS B 344 REMARK 465 GLY C 75 REMARK 465 ARG C 76 REMARK 465 LEU C 77 REMARK 465 GLY C 78 REMARK 465 GLY D 75 REMARK 465 ARG D 76 REMARK 465 LEU D 77 REMARK 465 GLY D 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 24 OD2 ASP C 52 1.48 REMARK 500 ND1 HIS B 291 O HOH B 401 1.48 REMARK 500 OE2 GLU C 18 O HOH C 101 1.61 REMARK 500 OE1 GLU D 24 OD2 ASP D 52 1.75 REMARK 500 O GLY D 14 NZ LYS D 33 2.15 REMARK 500 CE1 HIS B 291 O HOH B 401 2.16 REMARK 500 OE1 GLU A 286 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 39 OD2 ASP D 52 3444 1.11 REMARK 500 OE1 GLU A 327 OE1 GLU A 327 2555 1.44 REMARK 500 OE2 GLU C 24 OD2 ASP D 39 3444 1.47 REMARK 500 OD2 ASP C 52 OD2 ASP D 39 3444 1.62 REMARK 500 OE2 GLU A 286 OE2 GLU A 286 2455 1.65 REMARK 500 OE2 GLU A 334 OE2 GLU A 334 2555 1.95 REMARK 500 OE2 GLU B 272 OE2 GLU B 331 1556 2.02 REMARK 500 NE2 GLN B 268 OE2 GLU B 324 1556 2.04 REMARK 500 OD2 ASP C 39 OE1 GLU D 24 3444 2.06 REMARK 500 OE1 GLU A 327 OE1 GLN A 330 2555 2.08 REMARK 500 CD GLU A 327 OE1 GLU A 327 2555 2.12 REMARK 500 OE2 GLU C 24 CG ASP D 39 3444 2.12 REMARK 500 NE2 GLN A 268 NE2 GLN A 268 2455 2.18 REMARK 500 OE1 GLU A 279 OD2 ASP A 282 2455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 24 CD GLU C 24 OE2 0.103 REMARK 500 ASP D 52 CG ASP D 52 OD2 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 39 3.19 -65.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 420 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 421 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 418 DISTANCE = 6.21 ANGSTROMS DBREF 6XX0 A 258 344 UNP D3DWY0 D3DWY0_HUMAN 124 210 DBREF 6XX0 B 258 344 UNP D3DWY0 D3DWY0_HUMAN 124 210 DBREF 6XX0 C -1 78 PDB 6XX0 6XX0 -1 78 DBREF 6XX0 D -1 78 PDB 6XX0 6XX0 -1 78 SEQADV 6XX0 GLY A 256 UNP D3DWY0 EXPRESSION TAG SEQADV 6XX0 PRO A 257 UNP D3DWY0 EXPRESSION TAG SEQADV 6XX0 ALA A 289 UNP D3DWY0 GLU 155 CONFLICT SEQADV 6XX0 ALA A 292 UNP D3DWY0 LYS 158 CONFLICT SEQADV 6XX0 GLY B 256 UNP D3DWY0 EXPRESSION TAG SEQADV 6XX0 PRO B 257 UNP D3DWY0 EXPRESSION TAG SEQADV 6XX0 ALA B 289 UNP D3DWY0 GLU 155 CONFLICT SEQADV 6XX0 ALA B 292 UNP D3DWY0 LYS 158 CONFLICT SEQRES 1 A 89 GLY PRO MET GLN LEU GLU ASP LEU LYS GLN GLN LEU GLN SEQRES 2 A 89 GLN ALA GLU GLU ALA LEU VAL ALA LYS GLN GLU VAL ILE SEQRES 3 A 89 ASP LYS LEU LYS GLU GLU ALA ALA GLN HIS ALA ILE VAL SEQRES 4 A 89 MET GLU THR VAL PRO VAL LEU LYS ALA GLN ALA ASP ILE SEQRES 5 A 89 TYR LYS ALA ASP PHE GLN ALA GLU ARG GLN ALA ARG GLU SEQRES 6 A 89 LYS LEU ALA GLU LYS LYS GLU LEU LEU GLN GLU GLN LEU SEQRES 7 A 89 GLU GLN LEU GLN ARG GLU TYR SER LYS LEU LYS SEQRES 1 B 89 GLY PRO MET GLN LEU GLU ASP LEU LYS GLN GLN LEU GLN SEQRES 2 B 89 GLN ALA GLU GLU ALA LEU VAL ALA LYS GLN GLU VAL ILE SEQRES 3 B 89 ASP LYS LEU LYS GLU GLU ALA ALA GLN HIS ALA ILE VAL SEQRES 4 B 89 MET GLU THR VAL PRO VAL LEU LYS ALA GLN ALA ASP ILE SEQRES 5 B 89 TYR LYS ALA ASP PHE GLN ALA GLU ARG GLN ALA ARG GLU SEQRES 6 B 89 LYS LEU ALA GLU LYS LYS GLU LEU LEU GLN GLU GLN LEU SEQRES 7 B 89 GLU GLN LEU GLN ARG GLU TYR SER LYS LEU LYS SEQRES 1 C 80 GLY PRO MET GLN ILE ASN VAL LYS THR LEU THR GLY THR SEQRES 2 C 80 THR ILE GLY LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 80 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 80 PRO ASP GLN GLN ILE LEU PHE PHE SER GLY MET GLN LEU SEQRES 5 C 80 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 80 GLU SER ARG LEU TYR LEU VAL PHE SER LEU ARG GLY ARG SEQRES 7 C 80 LEU GLY SEQRES 1 D 80 GLY PRO MET GLN ILE ASN VAL LYS THR LEU THR GLY THR SEQRES 2 D 80 THR ILE GLY LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 D 80 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 D 80 PRO ASP GLN GLN ILE LEU PHE PHE SER GLY MET GLN LEU SEQRES 5 D 80 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 D 80 GLU SER ARG LEU TYR LEU VAL PHE SER LEU ARG GLY ARG SEQRES 7 D 80 LEU GLY FORMUL 5 HOH *88(H2 O) HELIX 1 AA1 LEU A 267 HIS A 291 1 25 HELIX 2 AA2 ILE A 293 GLU A 296 5 4 HELIX 3 AA3 THR A 297 TYR A 340 1 44 HELIX 4 AA4 GLN B 266 GLU B 296 1 31 HELIX 5 AA5 THR B 297 LEU B 336 1 40 HELIX 6 AA6 THR C 22 GLY C 35 1 14 HELIX 7 AA7 PRO C 37 ASP C 39 5 3 HELIX 8 AA8 THR C 55 TYR C 59 5 5 HELIX 9 AA9 THR D 22 GLY D 35 1 14 HELIX 10 AB1 PRO D 37 ASP D 39 5 3 HELIX 11 AB2 THR D 55 ASN D 60 1 6 SHEET 1 AA1 5 THR C 12 VAL C 17 0 SHEET 2 AA1 5 MET C 1 THR C 7 -1 N MET C 1 O VAL C 17 SHEET 3 AA1 5 ARG C 66 PHE C 71 1 O LEU C 67 N LYS C 6 SHEET 4 AA1 5 GLN C 41 PHE C 45 -1 N ILE C 42 O VAL C 70 SHEET 5 AA1 5 MET C 48 GLN C 49 -1 O MET C 48 N PHE C 45 SHEET 1 AA2 5 THR D 12 VAL D 17 0 SHEET 2 AA2 5 MET D 1 LYS D 6 -1 N MET D 1 O VAL D 17 SHEET 3 AA2 5 ARG D 66 PHE D 71 1 O LEU D 67 N LYS D 6 SHEET 4 AA2 5 GLN D 41 PHE D 45 -1 N ILE D 42 O VAL D 70 SHEET 5 AA2 5 MET D 48 GLN D 49 -1 O MET D 48 N PHE D 45 CRYST1 70.323 80.773 84.929 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011775 0.00000