HEADER HYDROLASE 28-JAN-20 6XXW TITLE STRUCTURE OF BETA-D-GLUCURONIDASE FOR DICTYOGLOMUS THERMOPHILUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOGLOMUS THERMOPHILUM (STRAIN ATCC 35947 / SOURCE 3 DSM 3960 / H-6-12); SOURCE 4 ORGANISM_TAXID: 309799; SOURCE 5 GENE: DICTH_1429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, GLUCURONIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LAFITE,R.DANIELLOU REVDAT 4 24-JAN-24 6XXW 1 REMARK REVDAT 3 05-AUG-20 6XXW 1 JRNL REVDAT 2 29-JUL-20 6XXW 1 JRNL REVDAT 1 15-JUL-20 6XXW 0 JRNL AUTH M.KURDZIEL,M.KOPEC,A.PARIS,K.LEWINSKI,P.LAFITE,R.DANIELLOU JRNL TITL THIOGLYCOLIGATION OF AROMATIC THIOLS USING A NATURAL JRNL TITL 2 GLUCURONIDE DONOR. JRNL REF ORG.BIOMOL.CHEM. V. 18 5582 2020 JRNL REFN ESSN 1477-0539 JRNL PMID 32671369 JRNL DOI 10.1039/D0OB00226G REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 50180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8340 - 4.4575 0.94 3502 145 0.1768 0.2147 REMARK 3 2 4.4575 - 3.5393 0.96 3440 144 0.1285 0.1550 REMARK 3 3 3.5393 - 3.0922 0.98 3480 144 0.1376 0.1619 REMARK 3 4 3.0922 - 2.8097 0.98 3459 144 0.1504 0.2194 REMARK 3 5 2.8097 - 2.6083 0.99 3481 144 0.1617 0.2276 REMARK 3 6 2.6083 - 2.4546 0.99 3453 143 0.1578 0.2285 REMARK 3 7 2.4546 - 2.3317 0.98 3444 142 0.1600 0.2237 REMARK 3 8 2.3317 - 2.2302 0.98 3433 142 0.1615 0.2081 REMARK 3 9 2.2302 - 2.1444 0.98 3448 144 0.1673 0.2360 REMARK 3 10 2.1444 - 2.0704 0.98 3431 142 0.1749 0.2319 REMARK 3 11 2.0704 - 2.0057 0.99 3453 143 0.1726 0.2164 REMARK 3 12 2.0057 - 1.9484 0.99 3420 142 0.1871 0.2342 REMARK 3 13 1.9484 - 1.8971 0.99 3450 143 0.2138 0.2853 REMARK 3 14 1.8971 - 1.8510 0.94 3288 136 0.2596 0.3023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180808 REMARK 200 DATA SCALING SOFTWARE : XDS 20180808 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 33.834 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.679 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.53 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1BHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V 2-METHYLPENTANE-2,2-DIOL 100MM REMARK 280 NAHEPES PH 7.5 100MM CITRATE SODIUM, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.27000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.56500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.91000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.56500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.91000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 130.54000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 115.82000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.54000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 998 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 ASN A 229 CG OD1 ND2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 ARG A 353 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 354 CG OD1 ND2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 ARG A 478 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 77 141.92 -171.62 REMARK 500 ASP A 140 -161.01 -122.53 REMARK 500 ASP A 155 56.20 -99.94 REMARK 500 ASN A 187 -119.71 59.06 REMARK 500 ASN A 237 74.83 -153.81 REMARK 500 ILE A 292 -50.09 75.97 REMARK 500 PRO A 344 30.30 -78.80 REMARK 500 TRP A 351 72.56 -48.37 REMARK 500 ASN A 352 114.65 174.83 REMARK 500 ARG A 362 -113.37 -121.01 REMARK 500 SER A 451 -4.34 78.06 REMARK 500 TRP A 452 -71.10 -106.87 REMARK 500 PHE A 486 147.20 -172.11 REMARK 500 PHE A 502 1.56 86.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1064 DISTANCE = 7.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 610 DBREF 6XXW A 1 578 UNP B5YFE0 B5YFE0_DICT6 1 578 SEQADV 6XXW MET A -19 UNP B5YFE0 INITIATING METHIONINE SEQADV 6XXW GLY A -18 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW SER A -17 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW SER A -16 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -15 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -14 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -13 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -12 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -11 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A -10 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW SER A -9 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW SER A -8 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW GLY A -7 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW LEU A -6 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW VAL A -5 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW PRO A -4 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW ARG A -3 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW GLY A -2 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW SER A -1 UNP B5YFE0 EXPRESSION TAG SEQADV 6XXW HIS A 0 UNP B5YFE0 EXPRESSION TAG SEQRES 1 A 598 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 598 LEU VAL PRO ARG GLY SER HIS MET LEU TYR PRO LYS GLU SEQRES 3 A 598 SER GLU THR ARG GLU VAL LYS ASP LEU SER GLY VAL TRP SEQRES 4 A 598 GLU PHE ARG THR GLU SER ASP LYS ASN TYR ILE LEU MET SEQRES 5 A 598 PRO VAL PRO ALA SER PHE ASN ASP ILE THR GLN ASP ILE SEQRES 6 A 598 ASN LEU ARG ASP TYR VAL GLY ARG VAL TYR TYR LYS LYS SEQRES 7 A 598 SER PHE PHE ILE PRO VAL TYR TRP LYS GLU ARG ASN ILE SEQRES 8 A 598 PHE LEU ARG VAL GLY ALA ALA ALA HIS PHE SER GLU VAL SEQRES 9 A 598 TYR VAL ASN GLY ASN LEU VAL THR LYS HIS LYS GLY GLY SEQRES 10 A 598 PHE LEU PRO PHE GLU ALA GLU ILE SER LYS PHE VAL ASN SEQRES 11 A 598 TYR GLY GLN GLU ASN ILE ILE GLU ILE MET VAL ASP ASN SEQRES 12 A 598 THR LEU THR TRP ASP VAL LEU PRO PRO GLY GLU LEU LYS SEQRES 13 A 598 VAL ILE GLU ASP GLU MET HIS PRO LYS GLY TYR LYS VAL SEQRES 14 A 598 LEU ASN TYR TYR PHE ASP PHE PHE ASN TYR SER GLY ILE SEQRES 15 A 598 HIS ARG PRO VAL VAL ILE TYR THR THR PRO LYS VAL TYR SEQRES 16 A 598 ILE LYS ASP PHE SER VAL ILE THR GLU LEU SER ASN ASN SEQRES 17 A 598 SER ALA LEU VAL LYS TYR SER ILE GLU SER GLU GLY ASN SEQRES 18 A 598 ASN PHE GLN VAL ILE LEU ARG ASP LYS ASP LYS ASN ILE SEQRES 19 A 598 VAL ALA GLU ASN PHE GLY LYS SER GLY VAL LEU GLU VAL SEQRES 20 A 598 LYS ASN PRO LYS LEU TRP GLU PRO GLY ASN PRO TYR LEU SEQRES 21 A 598 TYR ASN LEU GLU ILE LYS LEU LEU GLU LYS ASP ASN PHE SEQRES 22 A 598 ASP ILE TYR ARG MET ASP ILE GLY ILE ARG THR VAL ARG SEQRES 23 A 598 VAL GLU GLY LYS GLN PHE LEU ILE ASN GLU LYS PRO PHE SEQRES 24 A 598 TYR PHE LYS GLY PHE GLY LYS HIS GLU ASP SER ASP ILE SEQRES 25 A 598 ARG GLY LYS GLY LEU ASP GLN VAL ILE ASN ILE LYS ASP SEQRES 26 A 598 PHE ASN LEU LEU LYS TRP ILE GLY ALA ASN SER PHE ARG SEQRES 27 A 598 THR SER HIS TYR PRO TYR SER GLU GLU ILE LEU PHE LEU SEQRES 28 A 598 ALA ASP GLN TYR GLY ILE ALA VAL ILE GLU GLU ALA PRO SEQRES 29 A 598 ALA VAL GLY LEU ASN LEU TRP ASN ARG ASN GLU LYS VAL SEQRES 30 A 598 PHE THR GLU GLY ARG VAL ASP GLY LYS THR LEU GLU HIS SEQRES 31 A 598 HIS LEU GLU ILE MET ARG GLU LEU ILE ALA ARG ASP LYS SEQRES 32 A 598 ASN HIS PRO SER VAL ILE MET TRP SER VAL ALA ASN GLU SEQRES 33 A 598 ALA ALA THR TYR GLU ASP GLY ALA GLU GLU TYR PHE ARG SEQRES 34 A 598 ARG VAL ILE GLU GLU THR ARG ARG LEU ASP PRO THR ARG SEQRES 35 A 598 PRO ILE THR ILE VAL GLU ASN THR LYS ALA SER GLU THR SEQRES 36 A 598 LYS VAL SER LYS TYR VAL ASP VAL ILE CYS VAL ASN ARG SEQRES 37 A 598 TYR TYR SER TRP TYR THR ASP SER GLY ASP LEU SER VAL SEQRES 38 A 598 ILE GLU TYR GLN LEU GLU ARG ASP LEU ARG GLU TRP TYR SEQRES 39 A 598 GLU LEU TYR ARG LYS PRO ILE ILE LEU SER GLU PHE GLY SEQRES 40 A 598 ALA ASP ALA ILE SER GLY PHE HIS SER ASP PRO PRO LEU SEQRES 41 A 598 MET PHE THR GLU GLU TYR GLN GLN GLU MET ILE LYS ARG SEQRES 42 A 598 PHE VAL GLY VAL LEU ASP ARG LEU ASP PHE VAL VAL GLY SEQRES 43 A 598 GLU HIS ILE TRP ASN PHE ALA ASP PHE MET THR LYS GLN SEQRES 44 A 598 SER ILE THR ARG VAL VAL GLY ASN LYS LYS GLY VAL PHE SEQRES 45 A 598 THR ARG ASN ARG GLN PRO LYS MET VAL ALA HIS PHE LEU SEQRES 46 A 598 LYS GLU ARG TRP SER LYS LEU PRO ASP PHE TRP GLU LYS HET TRS A 601 8 HET TRS A 602 8 HET TRS A 603 8 HET TRS A 604 8 HET MPD A 605 8 HET TRS A 606 8 HET TRS A 607 8 HET TRS A 608 8 HET TRS A 609 8 HET CL A 610 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS 8(C4 H12 N O3 1+) FORMUL 6 MPD C6 H14 O2 FORMUL 11 CL CL 1- FORMUL 12 HOH *364(H2 O) HELIX 1 AA1 ASP A 44 ASP A 49 1 6 HELIX 2 AA2 PRO A 63 LYS A 67 5 5 HELIX 3 AA3 SER A 106 VAL A 109 5 4 HELIX 4 AA4 ASP A 298 GLY A 313 1 16 HELIX 5 AA5 SER A 325 GLY A 336 1 12 HELIX 6 AA6 ASP A 364 LYS A 383 1 20 HELIX 7 AA7 GLU A 401 ASP A 419 1 19 HELIX 8 AA8 VAL A 437 VAL A 441 5 5 HELIX 9 AA9 ASP A 458 SER A 460 5 3 HELIX 10 AB1 VAL A 461 ARG A 478 1 18 HELIX 11 AB2 THR A 503 ASP A 519 1 17 HELIX 12 AB3 LYS A 559 LEU A 572 1 14 SHEET 1 AA1 3 VAL A 12 ASP A 14 0 SHEET 2 AA1 3 GLY A 161 THR A 171 -1 O ILE A 168 N LYS A 13 SHEET 3 AA1 3 ALA A 36 SER A 37 -1 N ALA A 36 O ILE A 162 SHEET 1 AA2 4 VAL A 12 ASP A 14 0 SHEET 2 AA2 4 GLY A 161 THR A 171 -1 O ILE A 168 N LYS A 13 SHEET 3 AA2 4 ASN A 70 ALA A 79 -1 N PHE A 72 O TYR A 169 SHEET 4 AA2 4 PHE A 101 GLU A 104 -1 O PHE A 101 N VAL A 75 SHEET 1 AA3 6 ILE A 30 VAL A 34 0 SHEET 2 AA3 6 GLY A 17 THR A 23 -1 N PHE A 21 O ILE A 30 SHEET 3 AA3 6 ARG A 53 PHE A 61 -1 O TYR A 55 N ARG A 22 SHEET 4 AA3 6 GLU A 114 ASP A 122 -1 O ILE A 117 N LYS A 58 SHEET 5 AA3 6 PHE A 81 VAL A 86 -1 N TYR A 85 O GLU A 118 SHEET 6 AA3 6 ASN A 89 LYS A 95 -1 O VAL A 91 N VAL A 84 SHEET 1 AA4 2 GLY A 133 VAL A 137 0 SHEET 2 AA4 2 LYS A 148 TYR A 152 -1 O VAL A 149 N LYS A 136 SHEET 1 AA5 3 ASP A 178 SER A 186 0 SHEET 2 AA5 3 SER A 189 GLU A 197 -1 O LYS A 193 N ILE A 182 SHEET 3 AA5 3 SER A 222 LYS A 228 -1 O VAL A 227 N ALA A 190 SHEET 1 AA6 4 ILE A 214 PHE A 219 0 SHEET 2 AA6 4 PHE A 203 ARG A 208 -1 N VAL A 205 O ASN A 218 SHEET 3 AA6 4 TYR A 241 LEU A 248 -1 O GLU A 244 N ILE A 206 SHEET 4 AA6 4 PHE A 253 ILE A 260 -1 O ILE A 260 N TYR A 241 SHEET 1 AA7 2 TRP A 233 GLU A 234 0 SHEET 2 AA7 2 ASN A 237 PRO A 238 -1 O ASN A 237 N GLU A 234 SHEET 1 AA8 3 VAL A 265 GLU A 268 0 SHEET 2 AA8 3 GLN A 271 ILE A 274 -1 O LEU A 273 N ARG A 266 SHEET 3 AA8 3 LYS A 277 PRO A 278 -1 O LYS A 277 N ILE A 274 SHEET 1 AA9 9 PHE A 281 GLY A 285 0 SHEET 2 AA9 9 SER A 316 ARG A 318 1 O ARG A 318 N PHE A 284 SHEET 3 AA9 9 ALA A 338 GLU A 342 1 O ILE A 340 N PHE A 317 SHEET 4 AA9 9 VAL A 388 ASN A 395 1 O ILE A 389 N VAL A 339 SHEET 5 AA9 9 ILE A 424 GLU A 428 1 O THR A 425 N TRP A 391 SHEET 6 AA9 9 VAL A 443 ASN A 447 1 O CYS A 445 N GLU A 428 SHEET 7 AA9 9 ILE A 481 GLU A 485 1 O ILE A 482 N ILE A 444 SHEET 8 AA9 9 VAL A 524 TRP A 530 1 O HIS A 528 N LEU A 483 SHEET 9 AA9 9 PHE A 281 GLY A 285 1 N PHE A 281 O VAL A 525 CISPEP 1 VAL A 34 PRO A 35 0 2.47 CISPEP 2 ALA A 79 HIS A 80 0 8.21 CISPEP 3 LEU A 130 PRO A 131 0 -0.81 CISPEP 4 SER A 320 HIS A 321 0 -10.95 CISPEP 5 ASP A 497 PRO A 498 0 -9.57 CISPEP 6 TRP A 530 ASN A 531 0 4.16 SITE 1 AC1 10 ASP A 155 HIS A 321 ASN A 395 GLU A 396 SITE 2 AC1 10 ASN A 447 TYR A 449 GLU A 485 TRP A 530 SITE 3 AC1 10 CL A 610 HOH A 886 SITE 1 AC2 6 THR A 264 VAL A 265 ARG A 266 THR A 421 SITE 2 AC2 6 MPD A 605 HOH A 750 SITE 1 AC3 4 GLN A 334 TYR A 335 HOH A 723 HOH A 891 SITE 1 AC4 5 ASN A 349 TYR A 400 ASN A 429 THR A 430 SITE 2 AC4 5 HOH A 732 SITE 1 AC5 5 ARG A 266 VAL A 267 PRO A 420 PRO A 423 SITE 2 AC5 5 TRS A 602 SITE 1 AC6 3 ARG A 448 TYR A 449 TYR A 453 SITE 1 AC7 10 VAL A 181 THR A 183 ILE A 260 GLY A 261 SITE 2 AC7 10 ARG A 263 LYS A 383 ASN A 384 PRO A 386 SITE 3 AC7 10 ARG A 422 HOH A 995 SITE 1 AC8 5 TYR A 55 TYR A 85 ARG A 409 GLU A 413 SITE 2 AC8 5 HOH A 716 SITE 1 AC9 7 ASP A 40 ILE A 292 MET A 536 ARG A 554 SITE 2 AC9 7 HOH A 703 HOH A 765 HOH A 864 SITE 1 AD1 5 TYR A 453 TRP A 530 ASN A 547 LYS A 549 SITE 2 AD1 5 TRS A 601 CRYST1 79.130 115.820 130.540 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007660 0.00000