HEADER UNKNOWN FUNCTION 30-JAN-20 6XYD TITLE CRYSTAL STRUCTURE OF Q4D6Q6, A CONSERVED KINETOPLASTID-SPECIFIC TITLE 2 PROTEIN FROM TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 GENE: TC00.1047053511733.90; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS Q4D6Q5, TRYPANOSOMA, NEGLECTED DISEASES, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,U.HEINEMANN,E.D.ANDREA REVDAT 3 24-JAN-24 6XYD 1 LINK REVDAT 2 15-JUL-20 6XYD 1 JRNL REVDAT 1 10-JUN-20 6XYD 0 JRNL AUTH E.D.D'ANDREA,Y.ROSKE,G.A.P.OLIVEIRA,N.CREMER,A.DIEHL, JRNL AUTH 2 P.SCHMIEDER,U.HEINEMANN,H.OSCHKINAT,J.R.PIRES JRNL TITL CRYSTAL STRUCTURE OF Q4D6Q6, A CONSERVED JRNL TITL 2 KINETOPLASTID-SPECIFIC PROTEIN FROM TRYPANOSOMA CRUZI. JRNL REF J.STRUCT.BIOL. V. 211 07536 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32473201 JRNL DOI 10.1016/J.JSB.2020.107536 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3027 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2300 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2875 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16330 REMARK 3 B22 (A**2) : -0.14180 REMARK 3 B33 (A**2) : 1.30500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.18990 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.124 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3474 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4702 ; 3.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1210 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 507 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3474 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 447 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4127 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.7591 -2.7191 24.4355 REMARK 3 T TENSOR REMARK 3 T11: -0.0261 T22: -0.0673 REMARK 3 T33: -0.0544 T12: -0.0137 REMARK 3 T13: -0.0413 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.8726 L22: 1.9519 REMARK 3 L33: 2.4100 L12: 0.0304 REMARK 3 L13: 0.8260 L23: -0.3022 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.0638 S13: -0.0563 REMARK 3 S21: 0.1966 S22: -0.0708 S23: -0.1256 REMARK 3 S31: 0.0469 S32: 0.3079 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.8149 -0.8726 9.4812 REMARK 3 T TENSOR REMARK 3 T11: -0.0648 T22: -0.0502 REMARK 3 T33: -0.0243 T12: 0.0197 REMARK 3 T13: -0.0267 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.7595 L22: 1.5877 REMARK 3 L33: 2.6973 L12: 0.1839 REMARK 3 L13: 1.0391 L23: 0.8758 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0397 S13: 0.0441 REMARK 3 S21: -0.0323 S22: -0.0650 S23: 0.2288 REMARK 3 S31: 0.0341 S32: -0.4489 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.2786 -0.6816 3.4650 REMARK 3 T TENSOR REMARK 3 T11: -0.0536 T22: -0.0725 REMARK 3 T33: -0.0540 T12: 0.0069 REMARK 3 T13: -0.0225 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.2625 L22: 1.1983 REMARK 3 L33: 3.5409 L12: -0.0110 REMARK 3 L13: -1.3266 L23: 0.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.2951 S13: 0.1418 REMARK 3 S21: -0.1220 S22: -0.0303 S23: -0.0382 REMARK 3 S31: -0.0147 S32: -0.0311 S33: 0.0143 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.0024 -3.6547 30.7509 REMARK 3 T TENSOR REMARK 3 T11: -0.0424 T22: -0.0482 REMARK 3 T33: -0.1113 T12: -0.0234 REMARK 3 T13: 0.0142 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.6938 L22: 2.6726 REMARK 3 L33: 3.0027 L12: 0.2916 REMARK 3 L13: -0.2221 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.4798 S13: -0.0521 REMARK 3 S21: 0.2425 S22: -0.0519 S23: 0.2328 REMARK 3 S31: 0.3378 S32: -0.2946 S33: 0.0493 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 37.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6XYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM ACETATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.38550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 THR A 40 REMARK 465 SER A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 ASP A 47 REMARK 465 PRO A 48 REMARK 465 ASN A 116 REMARK 465 GLY B -2 REMARK 465 GLY B 37 REMARK 465 VAL B 38 REMARK 465 SER B 39 REMARK 465 THR B 40 REMARK 465 SER B 41 REMARK 465 SER B 42 REMARK 465 SER B 43 REMARK 465 PRO B 44 REMARK 465 SER B 45 REMARK 465 LYS B 46 REMARK 465 ASP B 47 REMARK 465 ASN B 116 REMARK 465 VAL C 38 REMARK 465 SER C 39 REMARK 465 THR C 40 REMARK 465 SER C 41 REMARK 465 SER C 42 REMARK 465 SER C 43 REMARK 465 PRO C 44 REMARK 465 SER C 45 REMARK 465 LYS C 46 REMARK 465 ASP C 47 REMARK 465 PRO C 48 REMARK 465 ASN C 116 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 PRO D 35 REMARK 465 THR D 36 REMARK 465 GLY D 37 REMARK 465 VAL D 38 REMARK 465 SER D 39 REMARK 465 THR D 40 REMARK 465 SER D 41 REMARK 465 SER D 42 REMARK 465 SER D 43 REMARK 465 PRO D 44 REMARK 465 SER D 45 REMARK 465 LYS D 46 REMARK 465 ASP D 47 REMARK 465 PRO D 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 66 CG CD OE1 NE2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 56 72.47 48.04 REMARK 500 HIS B 0 11.88 82.25 REMARK 500 ASN B 56 72.24 45.34 REMARK 500 LEU B 64 70.33 -106.02 REMARK 500 MET C 1 126.48 52.71 REMARK 500 ASN C 56 73.48 45.59 REMARK 500 LEU C 64 68.83 -119.31 REMARK 500 ASN D 56 73.27 45.39 REMARK 500 LEU D 64 68.47 -109.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 381 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH D 271 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 93 O REMARK 620 2 ARG B 93 O 155.7 REMARK 620 3 HOH B 372 O 106.6 97.1 REMARK 620 4 ARG C 93 O 87.0 92.7 103.7 REMARK 620 5 ARG D 93 O 89.7 79.9 102.2 153.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 95 O REMARK 620 2 SER B 95 O 163.0 REMARK 620 3 SER C 95 O 89.4 89.9 REMARK 620 4 SER D 95 O 87.8 87.7 162.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 97 O REMARK 620 2 SER B 97 O 173.0 REMARK 620 3 SER C 97 O 90.9 91.5 REMARK 620 4 SER D 97 O 87.1 89.7 173.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 DBREF 6XYD A 1 116 UNP Q4D6Q6 Q4D6Q6_TRYCC 1 116 DBREF 6XYD B 1 116 UNP Q4D6Q6 Q4D6Q6_TRYCC 1 116 DBREF 6XYD C 1 116 UNP Q4D6Q6 Q4D6Q6_TRYCC 1 116 DBREF 6XYD D 1 116 UNP Q4D6Q6 Q4D6Q6_TRYCC 1 116 SEQADV 6XYD GLY A -2 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD SER A -1 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD HIS A 0 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD GLY B -2 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD SER B -1 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD HIS B 0 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD GLY C -2 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD SER C -1 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD HIS C 0 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD GLY D -2 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD SER D -1 UNP Q4D6Q6 EXPRESSION TAG SEQADV 6XYD HIS D 0 UNP Q4D6Q6 EXPRESSION TAG SEQRES 1 A 119 GLY SER HIS MET PRO ASN LEU CYS VAL SER ALA THR PHE SEQRES 2 A 119 ASN PRO PRO VAL ILE THR MET LEU GLY SER ALA LEU ARG SEQRES 3 A 119 GLU GLU THR VAL LYS LEU LEU GLU GLN ARG ILE PRO THR SEQRES 4 A 119 GLY VAL SER THR SER SER SER PRO SER LYS ASP PRO VAL SEQRES 5 A 119 LYS PHE LEU PHE TYR PRO ASN PRO ASP HIS TRP ARG MET SEQRES 6 A 119 GLU LEU SER GLN HIS PHE CSO ASP ASP LEU HIS LYS SER SEQRES 7 A 119 ALA VAL PHE LEU THR ILE ILE GLU GLY LEU GLU GLY GLU SEQRES 8 A 119 GLY TRP ASN LEU ARG ALA SER ASN SER ILE ARG ASP SER SEQRES 9 A 119 GLU SER GLY LYS ASP THR THR LYS LEU PHE PHE ALA ARG SEQRES 10 A 119 ARG ASN SEQRES 1 B 119 GLY SER HIS MET PRO ASN LEU CYS VAL SER ALA THR PHE SEQRES 2 B 119 ASN PRO PRO VAL ILE THR MET LEU GLY SER ALA LEU ARG SEQRES 3 B 119 GLU GLU THR VAL LYS LEU LEU GLU GLN ARG ILE PRO THR SEQRES 4 B 119 GLY VAL SER THR SER SER SER PRO SER LYS ASP PRO VAL SEQRES 5 B 119 LYS PHE LEU PHE TYR PRO ASN PRO ASP HIS TRP ARG MET SEQRES 6 B 119 GLU LEU SER GLN HIS PHE CSO ASP ASP LEU HIS LYS SER SEQRES 7 B 119 ALA VAL PHE LEU THR ILE ILE GLU GLY LEU GLU GLY GLU SEQRES 8 B 119 GLY TRP ASN LEU ARG ALA SER ASN SER ILE ARG ASP SER SEQRES 9 B 119 GLU SER GLY LYS ASP THR THR LYS LEU PHE PHE ALA ARG SEQRES 10 B 119 ARG ASN SEQRES 1 C 119 GLY SER HIS MET PRO ASN LEU CYS VAL SER ALA THR PHE SEQRES 2 C 119 ASN PRO PRO VAL ILE THR MET LEU GLY SER ALA LEU ARG SEQRES 3 C 119 GLU GLU THR VAL LYS LEU LEU GLU GLN ARG ILE PRO THR SEQRES 4 C 119 GLY VAL SER THR SER SER SER PRO SER LYS ASP PRO VAL SEQRES 5 C 119 LYS PHE LEU PHE TYR PRO ASN PRO ASP HIS TRP ARG MET SEQRES 6 C 119 GLU LEU SER GLN HIS PHE CSO ASP ASP LEU HIS LYS SER SEQRES 7 C 119 ALA VAL PHE LEU THR ILE ILE GLU GLY LEU GLU GLY GLU SEQRES 8 C 119 GLY TRP ASN LEU ARG ALA SER ASN SER ILE ARG ASP SER SEQRES 9 C 119 GLU SER GLY LYS ASP THR THR LYS LEU PHE PHE ALA ARG SEQRES 10 C 119 ARG ASN SEQRES 1 D 119 GLY SER HIS MET PRO ASN LEU CYS VAL SER ALA THR PHE SEQRES 2 D 119 ASN PRO PRO VAL ILE THR MET LEU GLY SER ALA LEU ARG SEQRES 3 D 119 GLU GLU THR VAL LYS LEU LEU GLU GLN ARG ILE PRO THR SEQRES 4 D 119 GLY VAL SER THR SER SER SER PRO SER LYS ASP PRO VAL SEQRES 5 D 119 LYS PHE LEU PHE TYR PRO ASN PRO ASP HIS TRP ARG MET SEQRES 6 D 119 GLU LEU SER GLN HIS PHE CSO ASP ASP LEU HIS LYS SER SEQRES 7 D 119 ALA VAL PHE LEU THR ILE ILE GLU GLY LEU GLU GLY GLU SEQRES 8 D 119 GLY TRP ASN LEU ARG ALA SER ASN SER ILE ARG ASP SER SEQRES 9 D 119 GLU SER GLY LYS ASP THR THR LYS LEU PHE PHE ALA ARG SEQRES 10 D 119 ARG ASN MODRES 6XYD CSO A 69 CYS MODIFIED RESIDUE MODRES 6XYD CSO B 69 CYS MODIFIED RESIDUE MODRES 6XYD CSO C 69 CYS MODIFIED RESIDUE MODRES 6XYD CSO D 69 CYS MODIFIED RESIDUE HET CSO A 69 7 HET CSO B 69 7 HET CSO C 69 7 HET CSO D 69 7 HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET MG A 204 1 HET NA A 205 1 HET MG B 201 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 1 CSO 4(C3 H7 N O3 S) FORMUL 5 CL 3(CL 1-) FORMUL 8 MG 2(MG 2+) FORMUL 9 NA NA 1+ FORMUL 11 HOH *313(H2 O) HELIX 1 AA1 ARG A 23 SER A 39 1 17 HELIX 2 AA2 ASP A 70 GLU A 88 1 19 HELIX 3 AA3 ARG B 23 ILE B 34 1 12 HELIX 4 AA4 ASP B 70 GLU B 88 1 19 HELIX 5 AA5 ARG C 23 GLY C 37 1 15 HELIX 6 AA6 ASP C 70 GLU C 88 1 19 HELIX 7 AA7 ARG D 23 ILE D 34 1 12 HELIX 8 AA8 ASP D 70 GLU D 88 1 19 SHEET 1 AA1 6 LEU A 52 TYR A 54 0 SHEET 2 AA1 6 HIS A 59 GLU A 63 -1 O ARG A 61 N LEU A 52 SHEET 3 AA1 6 VAL A 14 LEU A 18 -1 N ILE A 15 O MET A 62 SHEET 4 AA1 6 ASN A 3 PHE A 10 -1 N CYS A 5 O LEU A 18 SHEET 5 AA1 6 LYS A 105 ALA A 113 -1 O THR A 108 N ALA A 8 SHEET 6 AA1 6 ASN A 91 ASP A 100 -1 N ARG A 93 O PHE A 111 SHEET 1 AA2 6 LEU B 52 TYR B 54 0 SHEET 2 AA2 6 HIS B 59 GLU B 63 -1 O ARG B 61 N LEU B 52 SHEET 3 AA2 6 VAL B 14 LEU B 18 -1 N ILE B 15 O MET B 62 SHEET 4 AA2 6 ASN B 3 PHE B 10 -1 N CYS B 5 O LEU B 18 SHEET 5 AA2 6 LYS B 105 ARG B 114 -1 O LEU B 110 N VAL B 6 SHEET 6 AA2 6 TRP B 90 ASP B 100 -1 N ASN B 91 O ALA B 113 SHEET 1 AA3 6 LEU C 52 TYR C 54 0 SHEET 2 AA3 6 HIS C 59 GLU C 63 -1 O ARG C 61 N LEU C 52 SHEET 3 AA3 6 VAL C 14 LEU C 18 -1 N ILE C 15 O MET C 62 SHEET 4 AA3 6 ASN C 3 PHE C 10 -1 N SER C 7 O THR C 16 SHEET 5 AA3 6 LYS C 105 ARG C 114 -1 O LEU C 110 N VAL C 6 SHEET 6 AA3 6 TRP C 90 ASP C 100 -1 N ASP C 100 O LYS C 105 SHEET 1 AA4 6 LEU D 52 TYR D 54 0 SHEET 2 AA4 6 HIS D 59 GLU D 63 -1 O ARG D 61 N LEU D 52 SHEET 3 AA4 6 VAL D 14 LEU D 18 -1 N ILE D 15 O MET D 62 SHEET 4 AA4 6 ASN D 3 PHE D 10 -1 N CYS D 5 O LEU D 18 SHEET 5 AA4 6 LYS D 105 ARG D 114 -1 O LEU D 110 N VAL D 6 SHEET 6 AA4 6 TRP D 90 ASP D 100 -1 N ASN D 91 O ALA D 113 LINK C PHE A 68 N CSO A 69 1555 1555 1.33 LINK C CSO A 69 N ASP A 70 1555 1555 1.35 LINK C PHE B 68 N CSO B 69 1555 1555 1.34 LINK C CSO B 69 N ASP B 70 1555 1555 1.34 LINK C PHE C 68 N CSO C 69 1555 1555 1.32 LINK C CSO C 69 N ASP C 70 1555 1555 1.35 LINK C PHE D 68 N CSO D 69 1555 1555 1.32 LINK C CSO D 69 N ASP D 70 1555 1555 1.34 LINK O ARG A 93 NA NA A 205 1555 1555 2.40 LINK O SER A 95 MG MG A 204 1555 1555 2.25 LINK O SER A 97 MG MG B 201 1555 1555 2.34 LINK MG MG A 204 O SER B 95 1555 1555 2.22 LINK MG MG A 204 O SER C 95 1555 1555 2.17 LINK MG MG A 204 O SER D 95 1555 1555 2.22 LINK NA NA A 205 O ARG B 93 1555 1555 2.36 LINK NA NA A 205 O HOH B 372 1555 1555 2.35 LINK NA NA A 205 O ARG C 93 1555 1555 2.28 LINK NA NA A 205 O ARG D 93 1555 1555 2.45 LINK O SER B 97 MG MG B 201 1555 1555 2.23 LINK MG MG B 201 O SER C 97 1555 1555 2.27 LINK MG MG B 201 O SER D 97 1555 1555 2.35 CISPEP 1 PHE A 10 ASN A 11 0 -4.80 CISPEP 2 ASN A 11 PRO A 12 0 -1.25 CISPEP 3 ASN A 56 PRO A 57 0 -7.33 CISPEP 4 PHE B 10 ASN B 11 0 -5.28 CISPEP 5 ASN B 11 PRO B 12 0 -0.65 CISPEP 6 ASN B 56 PRO B 57 0 -2.90 CISPEP 7 PHE C 10 ASN C 11 0 -5.97 CISPEP 8 ASN C 11 PRO C 12 0 -1.03 CISPEP 9 ASN C 56 PRO C 57 0 -5.54 CISPEP 10 PHE D 10 ASN D 11 0 -6.24 CISPEP 11 ASN D 11 PRO D 12 0 -1.08 CISPEP 12 ASN D 56 PRO D 57 0 -5.37 SITE 1 AC1 6 SER A 97 SER B 97 MG B 201 SER C 97 SITE 2 AC1 6 ASN D 96 SER D 97 SITE 1 AC2 5 SER A 95 MG A 204 SER B 95 SER C 95 SITE 2 AC2 5 SER D 95 SITE 1 AC3 5 SER A 95 CL A 203 SER B 95 SER C 95 SITE 2 AC3 5 SER D 95 SITE 1 AC4 5 ARG A 93 ARG B 93 HOH B 372 ARG C 93 SITE 2 AC4 5 ARG D 93 SITE 1 AC5 5 SER A 97 CL A 202 SER B 97 SER C 97 SITE 2 AC5 5 SER D 97 CRYST1 66.213 44.771 68.654 90.00 93.40 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015103 0.000000 0.000897 0.00000 SCALE2 0.000000 0.022336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014591 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.999264 0.019172 -0.033226 33.78744 1 MTRIX2 2 0.010357 0.968816 0.247566 -4.37239 1 MTRIX3 2 0.036936 0.247040 -0.968301 33.90043 1 MTRIX1 3 0.000798 0.106695 -0.994291 34.03192 1 MTRIX2 3 -0.123423 0.986700 0.105782 0.27495 1 MTRIX3 3 0.992354 0.122634 0.013956 0.48955 1 MTRIX1 4 -0.017911 -0.132901 0.990967 -0.27198 1 MTRIX2 4 0.126745 0.982829 0.134100 -4.35250 1 MTRIX3 4 -0.991774 0.128002 -0.000758 33.92490 1