HEADER IMMUNE SYSTEM 30-JAN-20 6XYM TITLE NBE-LBM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NBE-LBM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NANOBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR G.POMPIDOR,S.ZIMMERMANN,C.LOEW,T.SCHNEIDER REVDAT 1 10-FEB-21 6XYM 0 JRNL AUTH G.POMPIDOR,S.ZIMMERMANN,C.LOEW,T.SCHNEIDER JRNL TITL ENGINEERED NANOBODIES WITH A LANTHANIDE BINDING MOTIF FOR JRNL TITL 2 CRYSTALLOGRAPHIC PHASING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 77705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : 1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.492 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2221 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1965 ; 0.005 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3011 ; 2.073 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4554 ; 1.667 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 9.250 ; 5.066 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;28.054 ;21.855 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;15.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.711 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2655 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4182 ;11.339 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 63.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 3.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 %(W/V) PEG 1500, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.92750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.39600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.92750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.39600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 GLN B 1 REMARK 465 THR B 28 REMARK 465 PHE B 29 REMARK 465 SER B 54 REMARK 465 GLY B 55 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 356 O HOH A 423 1.55 REMARK 500 NH2 ARG A 109 O HOH A 301 1.67 REMARK 500 O HOH A 393 O HOH A 418 1.85 REMARK 500 O HOH B 337 O HOH B 346 1.88 REMARK 500 O HOH A 348 O HOH A 375 1.94 REMARK 500 O HOH A 370 O HOH A 423 2.02 REMARK 500 O HOH A 397 O HOH B 349 2.03 REMARK 500 O HOH A 407 O HOH A 429 2.06 REMARK 500 O HOH B 303 O HOH B 350 2.09 REMARK 500 O HOH A 336 O HOH B 326 2.14 REMARK 500 O HOH A 320 O HOH A 410 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 362 O HOH A 414 3555 1.94 REMARK 500 O HOH A 374 O HOH B 341 3545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 55 C GLY A 55 O 0.097 REMARK 500 TRP B 53 C TRP B 53 O 0.194 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 114 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 GLU B 6 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 TYR B 115 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 HIS B 127 CA - C - O ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 163.61 175.42 REMARK 500 ALA B 14 104.16 -45.05 REMARK 500 ALA B 92 168.45 178.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42C OD1 REMARK 620 2 ASN A 42E OD1 78.9 REMARK 620 3 ASP A 42G OD1 79.4 79.4 REMARK 620 4 ASP A 42G OD2 114.9 66.5 42.5 REMARK 620 5 TRP A 42I O 74.3 149.6 81.8 112.8 REMARK 620 6 GLU A 42K OE1 149.0 126.8 88.2 69.8 75.9 REMARK 620 7 GLU A 42K OE2 157.1 82.6 110.3 68.6 126.6 53.8 REMARK 620 8 GLU A 42N OE1 101.1 124.1 156.3 144.0 75.7 79.4 78.4 REMARK 620 9 GLU A 42N OE2 83.4 72.0 148.9 129.0 118.1 118.6 78.1 52.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB B 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42C OD1 REMARK 620 2 ASN B 42E OD1 80.8 REMARK 620 3 ASP B 42G OD1 83.4 81.0 REMARK 620 4 ASP B 42G OD2 118.8 66.4 43.0 REMARK 620 5 TRP B 42I O 70.9 146.5 78.4 112.1 REMARK 620 6 TRP B 42I O 75.6 149.7 77.8 109.3 4.8 REMARK 620 7 GLU B 42K OE1 155.1 81.2 110.5 68.4 130.9 126.5 REMARK 620 8 GLU B 42K OE2 148.8 125.5 84.9 67.6 78.5 73.7 55.6 REMARK 620 9 GLU B 42N OE1 98.8 125.1 153.9 142.4 77.8 77.6 77.9 80.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB B 201 DBREF 6XYM A 1 132 PDB 6XYM 6XYM 1 132 DBREF 6XYM B 1 132 PDB 6XYM 6XYM 1 132 SEQRES 1 A 143 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 143 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 143 GLY THR PHE LYS SER GLY GLY MET ALA TRP PHE ARG GLN SEQRES 4 A 143 ALA ASP THR ASN ASN ASP GLY TRP ILE GLU GLY ASP GLU SEQRES 5 A 143 LEU LYS ALA ARG GLU PHE ALA ALA GLY ILE SER TRP SER SEQRES 6 A 143 GLY GLY SER THR ASP TYR GLU ASP SER VAL LYS GLY ARG SEQRES 7 A 143 PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR MET TYR SEQRES 8 A 143 LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL SEQRES 9 A 143 TYR TYR CYS ALA ALA ALA ARG ARG PHE ARG ALA GLY VAL SEQRES 10 A 143 VAL THR ARG ALA ASP ASP VAL ASP TYR TRP GLY LYS GLY SEQRES 11 A 143 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 143 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 143 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 143 GLY THR PHE LYS SER GLY GLY MET ALA TRP PHE ARG GLN SEQRES 4 B 143 ALA ASP THR ASN ASN ASP GLY TRP ILE GLU GLY ASP GLU SEQRES 5 B 143 LEU LYS ALA ARG GLU PHE ALA ALA GLY ILE SER TRP SER SEQRES 6 B 143 GLY GLY SER THR ASP TYR GLU ASP SER VAL LYS GLY ARG SEQRES 7 B 143 PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR MET TYR SEQRES 8 B 143 LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL SEQRES 9 B 143 TYR TYR CYS ALA ALA ALA ARG ARG PHE ARG ALA GLY VAL SEQRES 10 B 143 VAL THR ARG ALA ASP ASP VAL ASP TYR TRP GLY LYS GLY SEQRES 11 B 143 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS HET TB A 201 1 HET TB B 201 1 HETNAM TB TERBIUM(III) ION FORMUL 3 TB 2(TB 3+) FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 GLU A 42K LYS A 43 5 6 HELIX 2 AA2 ASP A 62 LYS A 65 5 4 HELIX 3 AA3 LYS A 87 THR A 91 5 5 HELIX 4 AA4 ARG A 109 VAL A 113 5 5 HELIX 5 AA5 GLU B 42K ALA B 44 5 7 HELIX 6 AA6 ASP B 62 LYS B 65 5 4 HELIX 7 AA7 LYS B 87 THR B 91 5 5 HELIX 8 AA8 ARG B 109 VAL B 113 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 GLN A 13 0 SHEET 2 AA2 6 THR A 120 SER A 125 1 O THR A 123 N VAL A 12 SHEET 3 AA2 6 ALA A 92 ALA A 99 -1 N ALA A 92 O VAL A 122 SHEET 4 AA2 6 GLY A 33 GLN A 39 -1 N GLY A 33 O ALA A 99 SHEET 5 AA2 6 ARG A 45 SER A 52 -1 O ALA A 49 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ASP A 59 N GLY A 50 SHEET 1 AA3 4 LEU A 11 GLN A 13 0 SHEET 2 AA3 4 THR A 120 SER A 125 1 O THR A 123 N VAL A 12 SHEET 3 AA3 4 ALA A 92 ALA A 99 -1 N ALA A 92 O VAL A 122 SHEET 4 AA3 4 TYR A 115 TRP A 116 -1 O TYR A 115 N ALA A 98 SHEET 1 AA4 4 GLN B 3 SER B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA5 6 LEU B 11 GLN B 13 0 SHEET 2 AA5 6 THR B 120 SER B 125 1 O THR B 123 N VAL B 12 SHEET 3 AA5 6 ALA B 92 ALA B 99 -1 N TYR B 94 O THR B 120 SHEET 4 AA5 6 GLY B 33 ARG B 38 -1 N PHE B 37 O TYR B 95 SHEET 5 AA5 6 GLU B 46 SER B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 AA5 6 THR B 58 TYR B 60 -1 O ASP B 59 N GLY B 50 SHEET 1 AA6 4 LEU B 11 GLN B 13 0 SHEET 2 AA6 4 THR B 120 SER B 125 1 O THR B 123 N VAL B 12 SHEET 3 AA6 4 ALA B 92 ALA B 99 -1 N TYR B 94 O THR B 120 SHEET 4 AA6 4 TYR B 115 TRP B 116 -1 O TYR B 115 N ALA B 98 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.15 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.04 LINK OD1 ASP A 42C TB TB A 201 1555 1555 2.42 LINK OD1 ASN A 42E TB TB A 201 1555 1555 2.33 LINK OD1 ASP A 42G TB TB A 201 1555 1555 2.32 LINK OD2 ASP A 42G TB TB A 201 1555 1555 3.29 LINK O TRP A 42I TB TB A 201 1555 1555 2.33 LINK OE1 GLU A 42K TB TB A 201 1555 1555 2.48 LINK OE2 GLU A 42K TB TB A 201 1555 1555 2.39 LINK OE1 GLU A 42N TB TB A 201 1555 1555 2.44 LINK OE2 GLU A 42N TB TB A 201 1555 1555 2.51 LINK OD1 ASP B 42C TB TB B 201 1555 1555 2.20 LINK OD1 ASN B 42E TB TB B 201 1555 1555 2.36 LINK OD1 ASP B 42G TB TB B 201 1555 1555 2.35 LINK OD2 ASP B 42G TB TB B 201 1555 1555 3.26 LINK O ATRP B 42I TB TB B 201 1555 1555 2.38 LINK O BTRP B 42I TB TB B 201 1555 1555 2.24 LINK OE1 GLU B 42K TB TB B 201 1555 1555 2.37 LINK OE2 GLU B 42K TB TB B 201 1555 1555 2.41 LINK OE1 GLU B 42N TB TB B 201 1555 1555 2.41 LINK OE2 GLU B 42N TB TB B 201 1555 1555 2.49 SITE 1 AC1 6 ASP A 42C ASN A 42E ASP A 42G TRP A 42I SITE 2 AC1 6 GLU A 42K GLU A 42N SITE 1 AC2 6 ASP B 42C ASN B 42E ASP B 42G TRP B 42I SITE 2 AC2 6 GLU B 42K GLU B 42N CRYST1 60.731 63.855 66.792 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014972 0.00000