HEADER STRUCTURAL PROTEIN 31-JAN-20 6XYR TITLE STRUCTURE OF THE T4LNANO FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T4LNANO,ENDOLYSIN,CALMODULIN,ENDOLYSIN,CALMODULIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSIS PROTEIN,LYSOZYME,MURAMIDASE; COMPND 5 EC: 3.2.1.17,3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: AA 6 - 25 = CALMODULIN-BINDING PEPTIDE AA 26 - 36 = COMPND 8 SINGLE ALPHA-HELICAL DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 COMPND 9 LYSOZYME AA 200 - 213 = LINKER AA 214 - 361 = CALMODULIN (PDB ENTRY COMPND 10 2BBM),AA 6 - 25 = CALMODULIN-BINDING PEPTIDE AA 26 - 36 = SINGLE COMPND 11 ALPHA-HELICAL DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 LYSOZYME COMPND 12 AA 200 - 213 = LINKER AA 214 - 361 = CALMODULIN (PDB ENTRY 2BBM),AA 6 COMPND 13 - 25 = CALMODULIN-BINDING PEPTIDE AA 26 - 36 = SINGLE ALPHA-HELICAL COMPND 14 DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 LYSOZYME AA 200 - 213 = COMPND 15 LINKER AA 214 - 361 = CALMODULIN (PDB ENTRY 2BBM),AA 6 - 25 = COMPND 16 CALMODULIN-BINDING PEPTIDE AA 26 - 36 = SINGLE ALPHA-HELICAL DOMAIN COMPND 17 (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 LYSOZYME AA 200 - 213 = LINKER COMPND 18 AA 214 - 361 = CALMODULIN (PDB ENTRY 2BBM),AA 6 - 25 = CALMODULIN- COMPND 19 BINDING PEPTIDE AA 26 - 36 = SINGLE ALPHA-HELICAL DOMAIN (FROM PDB COMPND 20 ENTRY 5HMO) AA 37 - 199 = T4 LYSOZYME AA 200 - 213 = LINKER AA 214 - COMPND 21 361 = CALMODULIN (PDB ENTRY 2BBM),AA 6 - 25 = CALMODULIN-BINDING COMPND 22 PEPTIDE AA 26 - 36 = SINGLE ALPHA-HELICAL DOMAIN (FROM PDB ENTRY COMPND 23 5HMO) AA 37 - 199 = T4 LYSOZYME AA 200 - 213 = LINKER AA 214 - 361 = COMPND 24 CALMODULIN (PDB ENTRY 2BBM),AA 6 - 25 = CALMODULIN-BINDING PEPTIDE AA COMPND 25 26 - 36 = SINGLE ALPHA-HELICAL DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - COMPND 26 199 = T4 LYSOZYME AA 200 - 213 = LINKER AA 214 - 361 = CALMODULIN COMPND 27 (PDB ENTRY 2BBM),AA 6 - 25 = CALMODULIN-BINDING PEPTIDE AA 26 - 36 = COMPND 28 SINGLE ALPHA-HELICAL DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 COMPND 29 LYSOZYME AA 200 - 213 = LINKER AA 214 - 361 = CALMODULIN (PDB ENTRY COMPND 30 2BBM),AA 6 - 25 = CALMODULIN-BINDING PEPTIDE AA 26 - 36 = SINGLE COMPND 31 ALPHA-HELICAL DOMAIN (FROM PDB ENTRY 5HMO) AA 37 - 199 = T4 LYSOZYME COMPND 32 AA 200 - 213 = LINKER AA 214 - 361 = CALMODULIN (PDB ENTRY 2BBM) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUSION PROTEIN, CRYSTAL ENGINEERING, RIGID HELIX, MOLECULAR KEYWDS 2 BIOMIMETICS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.M.BENOIT,T.BIERIG,C.COLLU,S.ENGILBERGE,V.OLIERIC REVDAT 3 19-JAN-22 6XYR 1 JRNL REVDAT 2 13-OCT-21 6XYR 1 JRNL REMARK REVDAT 1 09-DEC-20 6XYR 0 JRNL AUTH G.COLLU,T.BIERIG,A.S.KREBS,S.ENGILBERGE,N.VARMA, JRNL AUTH 2 R.GUIXA-GONZALEZ,T.SHARPE,X.DEUPI,V.OLIERIC,E.POGHOSYAN, JRNL AUTH 3 R.M.BENOIT JRNL TITL CHIMERIC SINGLE ALPHA-HELICAL DOMAINS AS RIGID FUSION JRNL TITL 2 PROTEIN CONNECTIONS FOR PROTEIN NANOTECHNOLOGY AND JRNL TITL 3 STRUCTURAL BIOLOGY. JRNL REF STRUCTURE V. 30 95 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 34587504 JRNL DOI 10.1016/J.STR.2021.09.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.COLLU,T.BIERIG,A.-S.KREBS,S.ENGILBERGE,N.VARMA, REMARK 1 AUTH 2 R.GUIXA-GONZALEZ,X.DEUPI,V.OLIERIC,E.POGHOSYAN,R.M.BENOIT REMARK 1 TITL CHIMERIC SINGLE ALPHA-HELICAL DOMAINS AS RIGID FUSION REMARK 1 TITL 2 PROTEIN CONNECTIONS FOR PROTEIN NANOTECHNOLOGY AND REMARK 1 TITL 3 STRUCTURAL BIOLOGY REMARK 1 REF BIORXIV 2020 REMARK 1 REFN REMARK 1 DOI 10.1101/2020.09.29.318410 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1000 - 4.8872 1.00 2752 151 0.1757 0.1908 REMARK 3 2 4.8872 - 3.8797 1.00 2652 151 0.1442 0.1775 REMARK 3 3 3.8797 - 3.3895 1.00 2611 133 0.1753 0.2528 REMARK 3 4 3.3895 - 3.0796 1.00 2589 136 0.2039 0.2558 REMARK 3 5 3.0796 - 2.8589 1.00 2593 144 0.2054 0.3034 REMARK 3 6 2.8589 - 2.6904 1.00 2568 133 0.2125 0.2377 REMARK 3 7 2.6904 - 2.5557 1.00 2548 134 0.1917 0.2674 REMARK 3 8 2.5557 - 2.4444 1.00 2569 150 0.1995 0.2603 REMARK 3 9 2.4444 - 2.3503 1.00 2566 123 0.2186 0.2771 REMARK 3 10 2.3503 - 2.2692 1.00 2534 144 0.2349 0.2829 REMARK 3 11 2.2692 - 2.1983 1.00 2570 123 0.2620 0.3081 REMARK 3 12 2.1983 - 2.1355 1.00 2571 126 0.3025 0.3108 REMARK 3 13 2.1355 - 2.0792 0.99 2470 150 0.3367 0.3562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2846 REMARK 3 ANGLE : 1.038 3812 REMARK 3 CHIRALITY : 0.047 411 REMARK 3 PLANARITY : 0.006 500 REMARK 3 DIHEDRAL : 16.484 1739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.079 REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.12760 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 200 MM LICL2, 100 MM TRIS REMARK 280 PH 8.0, 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.19000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 HIS A 3 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 ALA A 211 REMARK 465 ALA A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 ASP A 215 REMARK 465 LYS A 361 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 4 SD CE REMARK 480 LYS A 22 CD CE NZ REMARK 480 ILE A 23 CG1 REMARK 480 GLU A 26 CG CD OE1 OE2 REMARK 480 LYS A 29 CE NZ REMARK 480 ARG A 30 NE CZ NH1 NH2 REMARK 480 LYS A 51 CD CE NZ REMARK 480 GLU A 57 CD OE1 OE2 REMARK 480 LYS A 83 CD CE NZ REMARK 480 LYS A 100 CD CE NZ REMARK 480 LYS A 118 CD CE NZ REMARK 480 ARG A 172 CD NE CZ NH1 NH2 REMARK 480 LYS A 182 CE NZ REMARK 480 GLU A 219 CG CD OE1 OE2 REMARK 480 ARG A 287 CZ NH1 NH2 REMARK 480 LYS A 288 CB CG CD CE NZ REMARK 480 LYS A 290 CB CG CD CE NZ REMARK 480 ASP A 291 CB CG OD1 OD2 REMARK 480 GLU A 295 CD OE1 OE2 REMARK 480 GLU A 296 CD OE1 OE2 REMARK 480 ARG A 299 NE CZ NH1 NH2 REMARK 480 GLU A 300 CG CD OE1 OE2 REMARK 480 LYS A 307 CG CD CE NZ REMARK 480 LYS A 328 CG CD CE NZ REMARK 480 GLU A 352 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 57.69 30.80 REMARK 500 ASP A 291 -12.11 82.92 REMARK 500 THR A 359 75.45 -100.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 152 OG REMARK 620 2 HOH A 611 O 144.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 233 OD1 REMARK 620 2 ASP A 235 OD1 75.2 REMARK 620 3 ASP A 237 OD1 81.5 80.9 REMARK 620 4 THR A 239 O 80.2 153.0 84.7 REMARK 620 5 GLU A 244 OE1 96.5 75.4 155.9 118.8 REMARK 620 6 GLU A 244 OE2 118.7 126.9 147.5 75.2 53.2 REMARK 620 7 HOH A 533 O 154.2 80.8 85.5 120.8 86.3 83.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 269 OD1 REMARK 620 2 ASP A 271 OD1 78.2 REMARK 620 3 ASN A 273 OD1 84.8 75.6 REMARK 620 4 THR A 275 O 88.0 150.6 77.4 REMARK 620 5 GLU A 280 OE1 110.2 128.4 152.9 80.7 REMARK 620 6 GLU A 280 OE2 91.3 76.9 152.4 129.9 52.8 REMARK 620 7 HOH A 537 O 161.5 83.4 89.2 107.8 82.5 85.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 306 OD1 REMARK 620 2 ASP A 308 OD1 83.6 REMARK 620 3 ASN A 310 OD1 81.6 72.7 REMARK 620 4 TYR A 312 O 88.1 152.0 79.7 REMARK 620 5 GLU A 317 OE1 97.0 131.8 155.4 75.7 REMARK 620 6 GLU A 317 OE2 100.7 78.6 150.7 129.3 53.8 REMARK 620 7 HOH A 605 O 174.7 95.9 93.2 89.9 87.2 84.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 342 OD1 REMARK 620 2 ASP A 344 OD1 78.6 REMARK 620 3 ASP A 346 OD1 88.1 74.5 REMARK 620 4 GLN A 348 O 84.6 148.9 79.0 REMARK 620 5 GLU A 353 OE1 114.0 131.4 147.3 79.4 REMARK 620 6 GLU A 353 OE2 83.3 84.2 158.2 119.8 53.5 REMARK 620 7 HOH A 559 O 166.2 90.8 80.5 100.7 79.6 104.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HR1 RELATED DB: PDB REMARK 900 RELATED TO SAME FUTURE PUBLICATION DBREF 6XYR A 1 36 PDB 6XYR 6XYR 1 36 DBREF 6XYR A 37 199 UNP P00720 ENLYS_BPT4 2 164 DBREF 6XYR A 214 361 UNP P0DP23 CALM1_HUMAN 2 149 SEQADV 6XYR GLY A 47 UNP P00720 ARG 12 ENGINEERED MUTATION SEQADV 6XYR ARG A 172 UNP P00720 ILE 137 ENGINEERED MUTATION SEQADV 6XYR GLY A 200 UNP P00720 LINKER SEQADV 6XYR GLU A 201 UNP P00720 LINKER SEQADV 6XYR ASN A 202 UNP P00720 LINKER SEQADV 6XYR LEU A 203 UNP P00720 LINKER SEQADV 6XYR TYR A 204 UNP P00720 LINKER SEQADV 6XYR PHE A 205 UNP P00720 LINKER SEQADV 6XYR GLN A 206 UNP P00720 LINKER SEQADV 6XYR SER A 207 UNP P00720 LINKER SEQADV 6XYR GLY A 208 UNP P00720 LINKER SEQADV 6XYR GLY A 209 UNP P00720 LINKER SEQADV 6XYR SER A 210 UNP P00720 LINKER SEQADV 6XYR ALA A 211 UNP P00720 LINKER SEQADV 6XYR ALA A 212 UNP P00720 LINKER SEQADV 6XYR ALA A 213 UNP P00720 LINKER SEQRES 1 A 361 GLY PRO HIS MET ALA ARG TRP LYS LYS ALA PHE ILE ALA SEQRES 2 A 361 VAL SER ALA ALA ASN ARG PHE LYS LYS ILE SER SER GLU SEQRES 3 A 361 GLU GLU LYS ARG LYS ARG GLU GLU GLU GLU ASN ILE PHE SEQRES 4 A 361 GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE SEQRES 5 A 361 TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY SEQRES 6 A 361 HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SEQRES 7 A 361 SER GLU LEU ASP LYS ALA ILE GLY ARG ASN CYS ASN GLY SEQRES 8 A 361 VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN SEQRES 9 A 361 ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA SEQRES 10 A 361 LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG SEQRES 11 A 361 ARG CYS ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU SEQRES 12 A 361 THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU SEQRES 13 A 361 GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA SEQRES 14 A 361 LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG ALA LYS SEQRES 15 A 361 ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP ALA SEQRES 16 A 361 TYR LYS ASN LEU GLY GLU ASN LEU TYR PHE GLN SER GLY SEQRES 17 A 361 GLY SER ALA ALA ALA ALA ASP GLN LEU THR GLU GLU GLN SEQRES 18 A 361 ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP LYS SEQRES 19 A 361 ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY THR SEQRES 20 A 361 VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA GLU SEQRES 21 A 361 LEU GLN ASP MET ILE ASN GLU VAL ASP ALA ASP GLY ASN SEQRES 22 A 361 GLY THR ILE ASP PHE PRO GLU PHE LEU THR MET MET ALA SEQRES 23 A 361 ARG LYS MET LYS ASP THR ASP SER GLU GLU GLU ILE ARG SEQRES 24 A 361 GLU ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY TYR SEQRES 25 A 361 ILE SER ALA ALA GLU LEU ARG HIS VAL MET THR ASN LEU SEQRES 26 A 361 GLY GLU LYS LEU THR ASP GLU GLU VAL ASP GLU MET ILE SEQRES 27 A 361 ARG GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR SEQRES 28 A 361 GLU GLU PHE VAL GLN MET MET THR ALA LYS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET GOL A 406 14 HET GOL A 407 14 HET GOL A 408 14 HET GOL A 409 13 HET GOL A 410 14 HET CL A 411 1 HET CL A 412 1 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 5(CA 2+) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 12 CL 2(CL 1-) FORMUL 14 HOH *135(H2 O) HELIX 1 AA1 MET A 4 SER A 24 1 21 HELIX 2 AA2 SER A 24 GLY A 47 1 24 HELIX 3 AA3 SER A 73 GLY A 86 1 14 HELIX 4 AA4 THR A 94 ASN A 116 1 23 HELIX 5 AA5 LEU A 119 LEU A 126 1 8 HELIX 6 AA6 ASP A 127 GLY A 148 1 22 HELIX 7 AA7 PHE A 149 GLN A 158 1 10 HELIX 8 AA8 ARG A 160 ALA A 169 1 10 HELIX 9 AA9 SER A 171 THR A 177 1 7 HELIX 10 AB1 THR A 177 GLY A 191 1 15 HELIX 11 AB2 TRP A 193 ASN A 198 1 6 HELIX 12 AB3 LEU A 199 LEU A 203 5 5 HELIX 13 AB4 THR A 218 ASP A 233 1 16 HELIX 14 AB5 THR A 241 LEU A 252 1 12 HELIX 15 AB6 THR A 257 ASP A 269 1 13 HELIX 16 AB7 ASP A 277 ARG A 287 1 11 HELIX 17 AB8 ASP A 293 ASP A 306 1 14 HELIX 18 AB9 SER A 314 GLY A 326 1 13 HELIX 19 AC1 THR A 330 ASP A 342 1 13 HELIX 20 AC2 TYR A 351 THR A 359 1 9 SHEET 1 AA1 3 ARG A 49 LYS A 54 0 SHEET 2 AA1 3 TYR A 60 GLY A 63 -1 O THR A 61 N TYR A 53 SHEET 3 AA1 3 HIS A 66 THR A 69 -1 O LEU A 68 N TYR A 60 SHEET 1 AA2 2 TYR A 312 ILE A 313 0 SHEET 2 AA2 2 VAL A 349 ASN A 350 -1 O VAL A 349 N ILE A 313 LINK OG SER A 152 CA CA A 405 1555 1555 3.17 LINK OD1 ASP A 233 CA CA A 401 1555 1555 2.30 LINK OD1 ASP A 235 CA CA A 401 1555 1555 2.48 LINK OD1 ASP A 237 CA CA A 401 1555 1555 2.44 LINK O THR A 239 CA CA A 401 1555 1555 2.30 LINK OE1 GLU A 244 CA CA A 401 1555 1555 2.52 LINK OE2 GLU A 244 CA CA A 401 1555 1555 2.43 LINK OD1 ASP A 269 CA CA A 402 1555 1555 2.26 LINK OD1 ASP A 271 CA CA A 402 1555 1555 2.41 LINK OD1 ASN A 273 CA CA A 402 1555 1555 2.43 LINK O THR A 275 CA CA A 402 1555 1555 2.35 LINK OE1 GLU A 280 CA CA A 402 1555 1555 2.46 LINK OE2 GLU A 280 CA CA A 402 1555 1555 2.46 LINK OD1 ASP A 306 CA CA A 404 1555 1555 2.21 LINK OD1 ASP A 308 CA CA A 404 1555 1555 2.68 LINK OD1 ASN A 310 CA CA A 404 1555 1555 2.31 LINK O TYR A 312 CA CA A 404 1555 1555 2.31 LINK OE1 GLU A 317 CA CA A 404 1555 1555 2.50 LINK OE2 GLU A 317 CA CA A 404 1555 1555 2.29 LINK OD1 ASP A 342 CA CA A 403 1555 1555 2.31 LINK OD1 ASP A 344 CA CA A 403 1555 1555 2.37 LINK OD1 ASP A 346 CA CA A 403 1555 1555 2.47 LINK O GLN A 348 CA CA A 403 1555 1555 2.36 LINK OE1 GLU A 353 CA CA A 403 1555 1555 2.42 LINK OE2 GLU A 353 CA CA A 403 1555 1555 2.46 LINK CA CA A 401 O HOH A 533 1555 1555 2.44 LINK CA CA A 402 O HOH A 537 1555 1555 2.28 LINK CA CA A 403 O HOH A 559 1555 1555 2.38 LINK CA CA A 404 O HOH A 605 1555 1555 2.23 LINK CA CA A 405 O HOH A 611 1555 1555 2.71 SITE 1 AC1 6 ASP A 233 ASP A 235 ASP A 237 THR A 239 SITE 2 AC1 6 GLU A 244 HOH A 533 SITE 1 AC2 6 ASP A 269 ASP A 271 ASN A 273 THR A 275 SITE 2 AC2 6 GLU A 280 HOH A 537 SITE 1 AC3 6 ASP A 342 ASP A 344 ASP A 346 GLN A 348 SITE 2 AC3 6 GLU A 353 HOH A 559 SITE 1 AC4 6 ASP A 306 ASP A 308 ASN A 310 TYR A 312 SITE 2 AC4 6 GLU A 317 HOH A 605 SITE 1 AC5 4 PHE A 149 SER A 152 ASN A 167 HOH A 611 SITE 1 AC6 3 TYR A 123 ALA A 128 HOH A 590 SITE 1 AC7 4 GLY A 148 SER A 171 HOH A 504 HOH A 545 SITE 1 AC8 3 ASP A 45 GLU A 46 GOL A 410 SITE 1 AC9 6 THR A 177 PRO A 178 ASN A 179 ARG A 180 SITE 2 AC9 6 GOL A 410 HOH A 544 SITE 1 AD1 5 ILE A 44 ASP A 45 ARG A 183 GOL A 408 SITE 2 AD1 5 GOL A 409 SITE 1 AD2 4 ASP A 82 ASN A 90 ARG A 154 ARG A 160 SITE 1 AD3 4 ASP A 127 LYS A 159 ASN A 273 HOH A 630 CRYST1 86.380 104.260 63.950 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015637 0.00000