HEADER DE NOVO PROTEIN 06-FEB-20 6Y06 TITLE MOEVAN: A DESIGNED GRANULOPOIETIC PROTEIN BY TOPOLOGICAL RESCAFFOLDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOEVAN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN DESIGN, RECEPTOR MODULATOR, GCSF MIMIC, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR M.ELGAMACY,M.COLES REVDAT 4 14-JUN-23 6Y06 1 REMARK REVDAT 3 20-JAN-21 6Y06 1 TITLE JRNL REVDAT 2 25-MAR-20 6Y06 1 TITLE KEYWDS REMARK REVDAT 1 18-MAR-20 6Y06 0 JRNL AUTH B.HERNANDEZ ALVAREZ,J.SKOKOWA,M.COLES,P.MIR,M.NASRI, JRNL AUTH 2 K.MAKSYMENKO,L.WEIDMANN,K.W.ROGERS,K.WELTE,A.N.LUPAS, JRNL AUTH 3 P.MULLER,M.ELGAMACY JRNL TITL DESIGN OF NOVEL GRANULOPOIETIC PROTEINS BY TOPOLOGICAL JRNL TITL 2 RESCAFFOLDING. JRNL REF PLOS BIOL. V. 18 00919 2020 JRNL REFN ESSN 1545-7885 JRNL PMID 33351791 JRNL DOI 10.1371/JOURNAL.PBIO.3000919 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ELGAMACY,M.RISS,H.ZHU,V.TRUFFAULT,M.COLES REMARK 1 TITL MAPPING LOCAL CONFORMATIONAL LANDSCAPES OF PROTEINS IN REMARK 1 TITL 2 SOLUTION. REMARK 1 REF STRUCTURE V. 27 853 2019 REMARK 1 REFN ISSN 1878-4186 REMARK 1 PMID 30930065 REMARK 1 DOI 10.1016/J.STR.2019.03.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : COMAND REMARK 3 AUTHORS : IN HOUSE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODELS ARE SELECTED FROM A POOL OF MD REMARK 3 FRAMES BASED ON AN R-FACTOR EXPRESSING THE MATCH BETWEEN BACK- REMARK 3 CALCULATED AND EXPERIMENTAL SPECTRA REMARK 4 REMARK 4 6Y06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 313 REMARK 210 PH : 5.2; 5.2 REMARK 210 IONIC STRENGTH : 125; 125 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-99% 13C; U-99% 15N] REMARK 210 MOEVAN, 50 MM PBS, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 (H)CC(CO)NH; 3D CCH-TOCSY; 2D REMARK 210 NOESY; 3D CNH-NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, ROSETTA REMARK 210 METHOD USED : NOESY BACK-CALCULATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-14 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 62 -80.80 -94.08 REMARK 500 2 GLU A 95 106.74 -54.29 REMARK 500 3 ARG A 62 -68.29 -98.65 REMARK 500 5 GLU A 58 -78.25 -101.68 REMARK 500 7 ARG A 62 -77.55 -94.46 REMARK 500 8 GLU A 58 -76.28 -105.92 REMARK 500 8 GLU A 95 46.27 -100.72 REMARK 500 9 ARG A 67 80.76 68.09 REMARK 500 9 ARG A 70 -57.48 -125.84 REMARK 500 10 THR A 32 30.65 73.33 REMARK 500 10 ARG A 33 -66.13 -138.15 REMARK 500 10 ASN A 66 1.18 -68.14 REMARK 500 11 GLU A 58 -85.78 -113.05 REMARK 500 12 GLU A 58 -73.09 -114.10 REMARK 500 13 GLU A 58 -88.70 -89.91 REMARK 500 14 PHE A 63 -63.86 -91.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34488 RELATED DB: BMRB REMARK 900 DESIGNING A GRANULOPOIETIC PROTEIN BY TOPOLOGICAL RESCAFFOLDING 2: REMARK 900 MOEVAN REMARK 900 RELATED ID: 6Y06 RELATED DB: PDB REMARK 900 RELATED ID: 6Y07 RELATED DB: PDB DBREF 6Y06 A -20 117 PDB 6Y06 6Y06 -20 117 SEQRES 1 A 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 138 LEU VAL PRO ARG GLY SER HIS MET GLU ALA ALA ALA ALA SEQRES 3 A 138 ALA ARG ASP GLU SER ALA TYR LEU LYS LEU GLN GLU GLN SEQRES 4 A 138 MET ARG LYS ILE ASP ALA ASP ALA ALA ALA LEU SER GLU SEQRES 5 A 138 THR ARG THR ILE GLU GLU LEU ASP THR PHE LYS LEU ASP SEQRES 6 A 138 VAL ALA ASP PHE VAL THR THR VAL VAL GLN LEU ALA GLU SEQRES 7 A 138 GLU LEU GLU HIS ARG PHE GLY ARG ASN ARG ARG GLY ARG SEQRES 8 A 138 THR GLU ILE TYR LYS ILE VAL LYS GLU VAL ASP ARG LYS SEQRES 9 A 138 LEU LEU ASP LEU THR ASP ALA VAL LEU ALA LYS GLU LYS SEQRES 10 A 138 LYS GLY GLU ASP ILE LEU ASN MET VAL ALA GLU ILE LYS SEQRES 11 A 138 ALA LEU LEU ILE ASN ILE TYR LYS HELIX 1 AA1 ALA A 6 THR A 32 1 27 HELIX 2 AA2 THR A 34 ARG A 62 1 29 HELIX 3 AA3 GLY A 69 ALA A 93 1 25 HELIX 4 AA4 LYS A 97 LYS A 117 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1