HEADER OXIDOREDUCTASE 10-FEB-20 6Y0P TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH IPN AND FE USING FT-SSX TITLE 2 METHODS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJB703 KEYWDS IRON DEPENDENT DIOXYGENASE, DNA REPAIR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.H.BEALE,P.A.LANG,A.S.DIRR,T.M.LEISSING,A.BUTRYN,P.ALLER, AUTHOR 2 J.J.A.G.KAMPS,D.AXFORD,M.A.MCDONOUGH,A.M.ORVILLE,R.OWEN, AUTHOR 3 C.J.SCHOFIELD REVDAT 3 24-JAN-24 6Y0P 1 REMARK REVDAT 2 01-SEP-21 6Y0P 1 JRNL REVDAT 1 17-FEB-21 6Y0P 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.692 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.5000 - 4.7700 1.00 1632 155 0.1700 0.1700 REMARK 3 2 4.7700 - 3.7900 1.00 1538 147 0.1300 0.1700 REMARK 3 3 3.7900 - 3.3100 1.00 1530 145 0.1600 0.1800 REMARK 3 4 3.3100 - 3.0100 1.00 1509 144 0.1800 0.2400 REMARK 3 5 3.0100 - 2.7900 1.00 1493 142 0.2000 0.2500 REMARK 3 6 2.7900 - 2.6300 1.00 1500 143 0.2000 0.2400 REMARK 3 7 2.6300 - 2.4900 1.00 1498 142 0.2100 0.2300 REMARK 3 8 2.4900 - 2.3900 1.00 1487 142 0.2100 0.2400 REMARK 3 9 2.3900 - 2.2900 1.00 1480 141 0.2200 0.2300 REMARK 3 10 2.2900 - 2.2200 1.00 1476 140 0.2300 0.2900 REMARK 3 11 2.2200 - 2.1500 1.00 1480 141 0.2400 0.2600 REMARK 3 12 2.1500 - 2.0800 1.00 1468 139 0.2600 0.3300 REMARK 3 13 2.0800 - 2.0300 0.99 1492 143 0.2700 0.3500 REMARK 3 14 2.0300 - 1.9800 0.98 1427 136 0.3000 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2701 REMARK 3 ANGLE : 0.619 3695 REMARK 3 CHIRALITY : 0.046 393 REMARK 3 PLANARITY : 0.004 485 REMARK 3 DIHEDRAL : 10.189 1591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6590 80.1660 -11.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.2177 REMARK 3 T33: 0.1755 T12: 0.0320 REMARK 3 T13: -0.0135 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.0097 L22: 7.0279 REMARK 3 L33: 3.2245 L12: 0.5754 REMARK 3 L13: -0.0258 L23: 2.7583 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: 0.0798 S13: 0.1265 REMARK 3 S21: -0.4703 S22: -0.1601 S23: 0.5374 REMARK 3 S31: -0.2154 S32: -0.3622 S33: 0.0386 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6268 77.6831 -13.4404 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.1759 REMARK 3 T33: 0.1668 T12: -0.0085 REMARK 3 T13: -0.0094 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.7514 L22: 0.5726 REMARK 3 L33: 2.6017 L12: -0.2464 REMARK 3 L13: -1.0971 L23: -0.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.2062 S13: 0.0300 REMARK 3 S21: -0.1637 S22: -0.0342 S23: 0.0023 REMARK 3 S31: 0.0628 S32: -0.2064 S33: 0.0170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1393 69.1855 18.2418 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2316 REMARK 3 T33: 0.2043 T12: 0.0019 REMARK 3 T13: 0.0272 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.7004 L22: 1.1230 REMARK 3 L33: 3.5873 L12: 0.2224 REMARK 3 L13: 0.9117 L23: 0.0427 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.2857 S13: -0.1611 REMARK 3 S21: 0.1824 S22: 0.1297 S23: 0.1364 REMARK 3 S31: 0.2599 S32: -0.3006 S33: -0.1460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3932 64.5039 13.7204 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.1718 REMARK 3 T33: 0.1728 T12: -0.0012 REMARK 3 T13: -0.0200 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.5920 L22: 1.9825 REMARK 3 L33: 2.1848 L12: -0.1766 REMARK 3 L13: 0.0809 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.1648 S13: -0.1764 REMARK 3 S21: 0.0667 S22: 0.0106 S23: 0.0567 REMARK 3 S31: 0.4881 S32: -0.0198 S33: -0.0176 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2662 65.9296 -2.5379 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.1748 REMARK 3 T33: 0.2192 T12: -0.0169 REMARK 3 T13: -0.0451 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.2179 L22: 1.4458 REMARK 3 L33: 5.2269 L12: 0.3362 REMARK 3 L13: -0.9583 L23: -1.2149 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0874 S13: -0.2310 REMARK 3 S21: 0.0653 S22: 0.0413 S23: -0.0020 REMARK 3 S31: 0.6068 S32: -0.2689 S33: -0.0612 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3048 80.6075 0.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1560 REMARK 3 T33: 0.1660 T12: -0.0026 REMARK 3 T13: -0.0116 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2344 L22: 1.3653 REMARK 3 L33: 2.9254 L12: -0.0539 REMARK 3 L13: -0.4697 L23: 0.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.0506 S13: 0.0874 REMARK 3 S21: 0.0240 S22: 0.0333 S23: -0.0132 REMARK 3 S31: 0.0392 S32: 0.1609 S33: -0.0744 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1401 77.5400 4.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.1453 REMARK 3 T33: 0.1104 T12: 0.0132 REMARK 3 T13: -0.0090 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.3438 L22: 1.6502 REMARK 3 L33: 2.6509 L12: 0.1067 REMARK 3 L13: -0.1926 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.0651 S13: -0.0692 REMARK 3 S21: -0.0235 S22: -0.0718 S23: 0.0618 REMARK 3 S31: 0.0400 S32: 0.1466 S33: -0.0513 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.7393 77.2071 -14.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.5377 REMARK 3 T33: 0.2724 T12: 0.0424 REMARK 3 T13: 0.0507 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 1.7485 L22: 2.3290 REMARK 3 L33: 2.1569 L12: -0.6908 REMARK 3 L13: 1.0401 L23: -1.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.3180 S13: 0.2456 REMARK 3 S21: -0.3814 S22: -0.2004 S23: -0.4612 REMARK 3 S31: 0.2247 S32: 1.2644 S33: 0.1100 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.1645 76.9429 8.5634 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.3811 REMARK 3 T33: 0.3251 T12: 0.0536 REMARK 3 T13: -0.0159 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.3844 L22: 2.2512 REMARK 3 L33: 2.6481 L12: -0.1029 REMARK 3 L13: -0.3763 L23: 0.8163 REMARK 3 S TENSOR REMARK 3 S11: -0.1198 S12: -0.1547 S13: 0.0670 REMARK 3 S21: 0.5096 S22: 0.0149 S23: 0.0969 REMARK 3 S31: -0.0146 S32: 0.3806 S33: 0.0736 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292105272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 60.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 59.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4970 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.13 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.859 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1 M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.88300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.61550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.88300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.61550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG2 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 37 CD NE CZ NH1 NH2 REMARK 470 GLN A 52 NE2 REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 GLN A 56 NE2 REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLN A 83 CD OE1 NE2 REMARK 470 ASP A 84 CG OD1 OD2 REMARK 470 LYS A 97 NZ REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 134 CE NZ REMARK 470 LYS A 166 NZ REMARK 470 ARG A 173 NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 NZ REMARK 470 ASP A 291 OD1 OD2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ASP A 307 OD2 REMARK 470 ARG A 308 NH1 NH2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ASN A 319 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -106.93 -101.14 REMARK 500 HIS A 82 59.09 -102.54 REMARK 500 LYS A 97 -40.45 -138.87 REMARK 500 THR A 123 -2.81 76.67 REMARK 500 ASN A 230 -29.24 -149.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 100.7 REMARK 620 3 HIS A 270 NE2 93.5 92.7 REMARK 620 4 HOH A 529 O 172.8 84.3 91.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IP1 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BKO RELATED DB: PDB REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6Y0P A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET IP1 A 402 45 HET FE A 403 1 HETNAM SO4 SULFATE ION HETNAM IP1 ISOPENICILLIN N HETNAM FE FE (III) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 IP1 C14 H21 N3 O6 S FORMUL 4 FE FE 3+ FORMUL 5 HOH *112(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N GLU A 101 O ARG A 188 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 403 1555 1555 2.14 LINK OD1 ASP A 216 FE FE A 403 1555 1555 2.14 LINK NE2 HIS A 270 FE FE A 403 1555 1555 2.27 LINK FE FE A 403 O HOH A 529 1555 1555 2.45 CISPEP 1 ASP A 193 PRO A 194 0 1.57 SITE 1 AC1 2 TRP A 274 ARG A 300 SITE 1 AC2 13 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC2 13 TYR A 189 VAL A 272 SER A 281 FE A 403 SITE 3 AC2 13 HOH A 540 HOH A 547 HOH A 553 HOH A 566 SITE 4 AC2 13 HOH A 572 SITE 1 AC3 5 HIS A 214 ASP A 216 HIS A 270 IP1 A 402 SITE 2 AC3 5 HOH A 529 CRYST1 41.766 75.231 101.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009821 0.00000