data_6Y14 # _entry.id 6Y14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6Y14 pdb_00006y14 10.2210/pdb6y14/pdb WWPDB D_1292106627 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-17 2 'Structure model' 1 1 2021-03-03 3 'Structure model' 1 2 2021-08-04 4 'Structure model' 1 3 2022-02-02 5 'Structure model' 2 0 2023-02-01 6 'Structure model' 2 1 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' Advisory 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Polymer sequence' 10 5 'Structure model' 'Source and taxonomy' 11 5 'Structure model' 'Structure summary' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Derived calculations' 14 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 4 'Structure model' database_2 7 5 'Structure model' atom_site 8 5 'Structure model' atom_site_anisotrop 9 5 'Structure model' citation 10 5 'Structure model' entity 11 5 'Structure model' entity_poly 12 5 'Structure model' entity_poly_seq 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_entity_src_syn 15 5 'Structure model' pdbx_nonpoly_scheme 16 5 'Structure model' pdbx_poly_seq_scheme 17 5 'Structure model' pdbx_struct_assembly_gen 18 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conf 21 5 'Structure model' struct_conn 22 5 'Structure model' struct_ref_seq 23 5 'Structure model' struct_site 24 5 'Structure model' struct_site_gen 25 6 'Structure model' chem_comp_atom 26 6 'Structure model' chem_comp_bond 27 6 'Structure model' pdbx_entry_details 28 6 'Structure model' pdbx_modification_feature 29 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation.year' 7 3 'Structure model' '_citation.pdbx_database_id_DOI' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_atom_site.Cartn_x' 11 5 'Structure model' '_atom_site.Cartn_y' 12 5 'Structure model' '_atom_site.Cartn_z' 13 5 'Structure model' '_atom_site.auth_asym_id' 14 5 'Structure model' '_atom_site.auth_atom_id' 15 5 'Structure model' '_atom_site.auth_comp_id' 16 5 'Structure model' '_atom_site.auth_seq_id' 17 5 'Structure model' '_atom_site.group_PDB' 18 5 'Structure model' '_atom_site.label_asym_id' 19 5 'Structure model' '_atom_site.label_atom_id' 20 5 'Structure model' '_atom_site.label_comp_id' 21 5 'Structure model' '_atom_site.label_entity_id' 22 5 'Structure model' '_atom_site.label_seq_id' 23 5 'Structure model' '_atom_site.type_symbol' 24 5 'Structure model' '_atom_site_anisotrop.U[1][1]' 25 5 'Structure model' '_atom_site_anisotrop.U[1][2]' 26 5 'Structure model' '_atom_site_anisotrop.U[1][3]' 27 5 'Structure model' '_atom_site_anisotrop.U[2][2]' 28 5 'Structure model' '_atom_site_anisotrop.U[2][3]' 29 5 'Structure model' '_atom_site_anisotrop.U[3][3]' 30 5 'Structure model' '_atom_site_anisotrop.id' 31 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 32 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 33 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 34 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 35 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 36 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 37 5 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 38 5 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 39 5 'Structure model' '_atom_site_anisotrop.type_symbol' 40 5 'Structure model' '_citation.journal_id_ISSN' 41 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 42 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 43 5 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 44 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 45 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id' 46 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_seq_id' 47 5 'Structure model' '_struct_conf.beg_auth_seq_id' 48 5 'Structure model' '_struct_conf.beg_label_seq_id' 49 5 'Structure model' '_struct_conf.end_auth_seq_id' 50 5 'Structure model' '_struct_conf.end_label_seq_id' 51 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 52 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 53 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 54 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 55 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 56 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 57 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 58 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 59 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 60 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 61 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 62 5 'Structure model' '_struct_ref_seq.db_align_beg' 63 5 'Structure model' '_struct_ref_seq.db_align_end' 64 5 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 65 5 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 66 5 'Structure model' '_struct_ref_seq.seq_align_end' 67 5 'Structure model' '_struct_site.details' 68 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 69 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 70 5 'Structure model' '_struct_site_gen.auth_asym_id' 71 5 'Structure model' '_struct_site_gen.auth_seq_id' 72 5 'Structure model' '_struct_site_gen.label_asym_id' 73 5 'Structure model' '_struct_site_gen.label_seq_id' 74 6 'Structure model' '_pdbx_entry_details.has_protein_modification' 75 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6Y14 _pdbx_database_status.recvd_initial_deposition_date 2020-02-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Baeriswyl, S.' 1 0000-0002-2899-4516 'Stocker, A.' 2 0000-0001-6862-7887 'Reymond, J.-L.' 3 0000-0003-2724-2942 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? UK ? ? 1 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? UK ? ? 2 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? US ? ? 3 Chemrxiv ? ? 2573-2293 ? ? ? ? ? ? 'Mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography' 2021 ? 10.26434/chemrxiv.14052293.v3 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baeriswyl, S.' 1 0000-0002-2899-4516 primary 'Personne, H.' 2 0000-0002-2078-0564 primary 'Di Bonaventura, I.' 3 0000-0002-0535-1198 primary 'Kohler, T.' 4 0000-0003-4889-9492 primary 'van Delden, C.' 5 0000-0002-2901-8285 primary 'Stocker, A.' 6 0000-0001-6862-7887 primary 'Javor, S.' 7 0000-0002-0342-3418 primary 'Reymond, J.L.' 8 0000-0003-2724-2942 1 'Baeriswyl, S.' 9 0000-0002-2899-4516 1 'Personne, H.' 10 0000-0002-2078-0564 1 'Di Bonaventura, I.' 11 0000-0002-0535-1198 1 'Kohler, T.' 12 0000-0003-4889-9492 1 'van Delden, C.' 13 0000-0002-2901-8285 1 'Stocker, A.' 14 0000-0001-6862-7887 1 'Javor, S.' 15 0000-0002-0342-3418 1 'Reymond, J.L.' 16 0000-0003-2724-2942 2 'Baeriswyl, S.' 17 0000-0002-2899-4516 2 'Personne, H.' 18 0000-0002-2078-0564 2 'Di Bonaventura, I.' 19 0000-0002-0535-1198 2 'Kohler, T.' 20 0000-0003-4889-9492 2 'van Delden, C.' 21 0000-0002-2901-8285 2 'Stocker, A.' 22 0000-0001-6862-7887 2 'Javor, S.' 23 0000-0002-0342-3418 2 'Reymond, J.L.' 24 0000-0003-2724-2942 3 'Personne, H.' 25 ? 3 'Baeriswyl, S.' 26 0000-0002-2899-4516 3 'Di Bonaventura, I.' 27 ? 3 'Kohler, T.' 28 ? 3 'van Delden, C.' 29 ? 3 'Stocker, A.' 30 0000-0001-6862-7887 3 'Javor, S.' 31 ? 3 'Reymond, J.-L.' 32 0000-0003-2724-2942 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn bp65 1483.001 2 ? ? ? 'Antimicrobial Bicyclic Stapled Peptide bp65, crystallized as racemate with its D-enantiomer bp69' 2 non-polymer syn 'CITRIC ACID' 192.124 2 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(O65)KKLLKCLKCLL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XKKLLKCLKCLLX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRIC ACID' CIT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 O65 n 1 2 LYS n 1 3 LYS n 1 4 LEU n 1 5 LEU n 1 6 LYS n 1 7 CYS n 1 8 LEU n 1 9 LYS n 1 10 CYS n 1 11 LEU n 1 12 LEU n 1 13 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 O65 non-polymer . '3,5-bis(hydroxymethyl)-4-methyl-benzaldehyde' ? 'C10 H12 O4' 196.200 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 O65 1 101 1 O65 DBZ A . n A 1 2 LYS 2 102 2 LYS LYS A . n A 1 3 LYS 3 103 3 LYS LYS A . n A 1 4 LEU 4 104 4 LEU LEU A . n A 1 5 LEU 5 105 5 LEU LEU A . n A 1 6 LYS 6 106 6 LYS LYS A . n A 1 7 CYS 7 107 7 CYS CYS A . n A 1 8 LEU 8 108 8 LEU LEU A . n A 1 9 LYS 9 109 9 LYS LYS A . n A 1 10 CYS 10 110 10 CYS CYS A . n A 1 11 LEU 11 111 11 LEU LEU A . n A 1 12 LEU 12 112 12 LEU LEU A . n A 1 13 NH2 13 113 13 NH2 NH2 A . n B 1 1 O65 1 101 1 O65 DBZ B . n B 1 2 LYS 2 102 2 LYS LYS B . n B 1 3 LYS 3 103 3 LYS LYS B . n B 1 4 LEU 4 104 4 LEU LEU B . n B 1 5 LEU 5 105 5 LEU LEU B . n B 1 6 LYS 6 106 6 LYS LYS B . n B 1 7 CYS 7 107 7 CYS CYS B . n B 1 8 LEU 8 108 8 LEU LEU B . n B 1 9 LYS 9 109 9 LYS LYS B . n B 1 10 CYS 10 110 10 CYS CYS B . n B 1 11 LEU 11 111 11 LEU LEU B . n B 1 12 LEU 12 112 12 LEU LEU B . n B 1 13 NH2 13 113 13 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT 1 201 1 CIT CIT A . D 2 CIT 1 201 2 CIT CIT B . E 3 HOH 1 301 2 HOH HOH A . E 3 HOH 2 302 27 HOH HOH A . E 3 HOH 3 303 8 HOH HOH A . E 3 HOH 4 304 16 HOH HOH A . E 3 HOH 5 305 4 HOH HOH A . E 3 HOH 6 306 5 HOH HOH A . E 3 HOH 7 307 11 HOH HOH A . E 3 HOH 8 308 3 HOH HOH A . F 3 HOH 1 301 9 HOH HOH B . F 3 HOH 2 302 28 HOH HOH B . F 3 HOH 3 303 12 HOH HOH B . F 3 HOH 4 304 1 HOH HOH B . F 3 HOH 5 305 17 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 109 ? CD ? A LYS 9 CD 2 1 Y 1 A LYS 109 ? CE ? A LYS 9 CE 3 1 Y 1 A LYS 109 ? NZ ? A LYS 9 NZ 4 1 Y 1 B LYS 109 ? CD ? B LYS 9 CD 5 1 Y 1 B LYS 109 ? CE ? B LYS 9 CE 6 1 Y 1 B LYS 109 ? NZ ? B LYS 9 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? phasing ? ? 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de ? ? ? ? Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ ? SHELX ? ? package . 3 ? refinement ? ? 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de ? ? ? ? Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ ? SHELX ? ? package . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 5 # _cell.angle_alpha 111.280 _cell.angle_alpha_esd ? _cell.angle_beta 92.260 _cell.angle_beta_esd ? _cell.angle_gamma 101.960 _cell.angle_gamma_esd ? _cell.entry_id 6Y14 _cell.details ? _cell.formula_units_Z ? _cell.length_a 16.482 _cell.length_a_esd ? _cell.length_b 26.209 _cell.length_b_esd ? _cell.length_c 29.909 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Y14 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.880 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Sodium citrate tribasic dihydrate pH 5.6, 35% v/v tert-Butanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.000 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6Y14 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.90 _reflns.d_resolution_low 27.700 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29455 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.71 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.76 _reflns.pdbx_Rmerge_I_obs 0.165 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.233 _reflns.pdbx_Rpim_I_all 0.165 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.925 _reflns.pdbx_CC_star 0.980 _reflns.pdbx_R_split 0.233 # _reflns_shell.d_res_high 0.90 _reflns_shell.d_res_low 0.92 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1448 _reflns_shell.percent_possible_all 84.73 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.247 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.76 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.349 _reflns_shell.pdbx_Rpim_I_all 0.247 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.886 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 3.950 _refine.B_iso_mean 3.9500 _refine.B_iso_min 3.950 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6Y14 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.9000 _refine.ls_d_res_low 27.7000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29455 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.7 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1913 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1264 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model NONE _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 0.9000 _refine_hist.d_res_low 27.7000 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 243 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 26 _refine_hist.pdbx_B_iso_mean_ligand 3.95 _refine_hist.pdbx_B_iso_mean_solvent 3.95 _refine_hist.pdbx_number_atoms_protein 194 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? ? ? s_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.822 ? ? ? s_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_similar_dist ? ? 'X-RAY DIFFRACTION' ? 0.005 ? ? ? s_from_restr_planes ? ? 'X-RAY DIFFRACTION' ? 94.000 ? ? ? s_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 1.000 ? ? ? s_non_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.128 ? ? ? s_anti_bump_dis_restr ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_rigid_bond_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.022 ? ? ? s_similar_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_approx_iso_adps ? ? # _database_PDB_matrix.entry_id 6Y14 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 6Y14 _struct.title 'Bicyclic peptide bp65 crystallized as racemic mixture at 0.9 Angstrom resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Y14 _struct_keywords.text 'Antimicrobial, Bicyclic, Stapled, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6Y14 _struct_ref.pdbx_db_accession 6Y14 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6Y14 A 1 ? 13 ? 6Y14 101 ? 113 ? 101 113 2 1 6Y14 B 1 ? 13 ? 6Y14 101 ? 113 ? 101 113 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1190 ? 1 MORE 3 ? 1 'SSA (A^2)' 2470 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details 'The unit cell contains 2 L- and 2 D-peptides related via an inversion center' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 3 ? LEU A 12 ? LYS A 103 LEU A 112 1 ? 10 HELX_P HELX_P2 AA2 LYS B 3 ? LEU B 12 ? LYS B 103 LEU B 112 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A O65 1 CAJ ? ? ? 1_555 A LYS 2 N ? ? A O65 101 A LYS 102 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale one ? A O65 1 CAH ? ? ? 1_555 A CYS 7 SG ? ? A O65 101 A CYS 107 1_555 ? ? ? ? ? ? ? 1.809 ? ? covale3 covale one ? A O65 1 CAM ? ? ? 1_555 A CYS 10 SG ? ? A O65 101 A CYS 110 1_555 ? ? ? ? ? ? ? 1.804 ? ? covale4 covale both ? A LEU 12 C ? ? ? 1_555 A NH2 13 N ? ? A LEU 112 A NH2 113 1_555 ? ? ? ? ? ? ? 1.273 ? ? covale5 covale both ? B O65 1 CAJ ? ? ? 1_555 B LYS 2 N ? ? B O65 101 B LYS 102 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale6 covale one ? B O65 1 CAH ? ? ? 1_555 B CYS 7 SG ? ? B O65 101 B CYS 107 1_555 ? ? ? ? ? ? ? 1.826 ? ? covale7 covale one ? B O65 1 CAM ? ? ? 1_555 B CYS 10 SG ? ? B O65 101 B CYS 110 1_555 ? ? ? ? ? ? ? 1.837 ? ? covale8 covale both ? B LEU 12 C ? ? ? 1_555 B NH2 13 N ? ? B LEU 112 B NH2 113 1_555 ? ? ? ? ? ? ? 1.271 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 O65 A 1 ? . . . . O65 A 101 ? 1_555 . . . . . . . ? 1 O65 None 'Non-standard residue' 2 O65 B 1 ? . . . . O65 B 101 ? 1_555 . . . . . . . ? 1 O65 None 'Non-standard residue' 3 NH2 A 13 ? LEU A 12 ? NH2 A 113 ? 1_555 LEU A 112 ? 1_555 . . LEU 14 NH2 None 'Terminal amidation' 4 NH2 B 13 ? LEU B 12 ? NH2 B 113 ? 1_555 LEU B 112 ? 1_555 . . LEU 14 NH2 None 'Terminal amidation' 5 O65 A 1 ? CYS A 7 ? O65 A 101 ? 1_555 CYS A 107 ? 1_555 CAH SG . . . None 'Non-standard linkage' 6 O65 A 1 ? CYS A 10 ? O65 A 101 ? 1_555 CYS A 110 ? 1_555 CAM SG . . . None 'Non-standard linkage' 7 O65 B 1 ? CYS B 7 ? O65 B 101 ? 1_555 CYS B 107 ? 1_555 CAH SG . . . None 'Non-standard linkage' 8 O65 B 1 ? CYS B 10 ? O65 B 101 ? 1_555 CYS B 110 ? 1_555 CAM SG . . . None 'Non-standard linkage' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A O65 101 ? 8 'binding site for residue O65 A 101' AC2 Software A CIT 201 ? 9 'binding site for residue CIT A 201' AC3 Software B CIT 201 ? 7 'binding site for residue CIT B 201' AC4 Software B LEU 112 ? 6 'binding site for Di-peptide LEU B 12 and NH2 B 13' AC5 Software B O65 101 ? 12 'binding site for Di-peptide O65 B 101 and CYS B 10' AC6 Software B O65 101 ? 11 'binding site for Di-peptide O65 B 101 and CYS B 7' AC7 Software B O65 101 ? 11 'binding site for Di-peptide O65 B 101 and LYS B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 2 ? LYS A 102 . ? 1_555 ? 2 AC1 8 LYS A 3 ? LYS A 103 . ? 1_555 ? 3 AC1 8 LYS A 6 ? LYS A 106 . ? 1_555 ? 4 AC1 8 CYS A 7 ? CYS A 107 . ? 1_555 ? 5 AC1 8 CYS A 10 ? CYS A 110 . ? 1_555 ? 6 AC1 8 LEU A 11 ? LEU A 111 . ? 1_555 ? 7 AC1 8 O65 B 1 ? O65 B 101 . ? 1_555 ? 8 AC1 8 CIT C . ? CIT A 201 . ? 1_555 ? 9 AC2 9 LYS A 2 ? LYS A 102 . ? 1_555 ? 10 AC2 9 LYS A 3 ? LYS A 103 . ? 1_455 ? 11 AC2 9 O65 A 1 ? O65 A 101 . ? 1_555 ? 12 AC2 9 HOH E . ? HOH A 303 . ? 1_555 ? 13 AC2 9 HOH E . ? HOH A 304 . ? 1_555 ? 14 AC2 9 HOH E . ? HOH A 308 . ? 1_455 ? 15 AC2 9 LYS B 2 ? LYS B 102 . ? 1_555 ? 16 AC2 9 CIT D . ? CIT B 201 . ? 1_555 ? 17 AC2 9 HOH E . ? HOH A 302 . ? 1_555 ? 18 AC3 7 LYS A 2 ? LYS A 102 . ? 1_555 ? 19 AC3 7 LYS B 2 ? LYS B 102 . ? 1_555 ? 20 AC3 7 LYS B 3 ? LYS B 103 . ? 1_655 ? 21 AC3 7 LYS B 6 ? LYS B 106 . ? 1_555 ? 22 AC3 7 O65 B 1 ? O65 B 101 . ? 1_555 ? 23 AC3 7 CIT C . ? CIT A 201 . ? 1_555 ? 24 AC3 7 HOH F . ? HOH B 302 . ? 1_555 ? 25 AC4 6 LEU B 4 ? LEU B 104 . ? 1_655 ? 26 AC4 6 LEU B 5 ? LEU B 105 . ? 1_655 ? 27 AC4 6 LEU B 8 ? LEU B 108 . ? 1_555 ? 28 AC4 6 LYS B 9 ? LYS B 109 . ? 1_555 ? 29 AC4 6 CYS B 10 ? CYS B 110 . ? 1_555 ? 30 AC4 6 LEU B 11 ? LEU B 111 . ? 1_555 ? 31 AC5 12 O65 A 1 ? O65 A 101 . ? 1_555 ? 32 AC5 12 LYS B 2 ? LYS B 102 . ? 1_555 ? 33 AC5 12 LYS B 3 ? LYS B 103 . ? 1_655 ? 34 AC5 12 LYS B 3 ? LYS B 103 . ? 1_555 ? 35 AC5 12 LYS B 6 ? LYS B 106 . ? 1_555 ? 36 AC5 12 CYS B 7 ? CYS B 107 . ? 1_555 ? 37 AC5 12 LEU B 8 ? LEU B 108 . ? 1_555 ? 38 AC5 12 LYS B 9 ? LYS B 109 . ? 1_555 ? 39 AC5 12 LEU B 11 ? LEU B 111 . ? 1_555 ? 40 AC5 12 LEU B 12 ? LEU B 112 . ? 1_555 ? 41 AC5 12 CIT D . ? CIT B 201 . ? 1_555 ? 42 AC5 12 HOH F . ? HOH B 301 . ? 1_655 ? 43 AC6 11 O65 A 1 ? O65 A 101 . ? 1_555 ? 44 AC6 11 LYS B 2 ? LYS B 102 . ? 1_555 ? 45 AC6 11 LYS B 3 ? LYS B 103 . ? 1_555 ? 46 AC6 11 LEU B 4 ? LEU B 104 . ? 1_555 ? 47 AC6 11 LEU B 5 ? LEU B 105 . ? 1_555 ? 48 AC6 11 LYS B 6 ? LYS B 106 . ? 1_555 ? 49 AC6 11 LEU B 8 ? LEU B 108 . ? 1_555 ? 50 AC6 11 LYS B 9 ? LYS B 109 . ? 1_555 ? 51 AC6 11 CYS B 10 ? CYS B 110 . ? 1_555 ? 52 AC6 11 LEU B 11 ? LEU B 111 . ? 1_555 ? 53 AC6 11 CIT D . ? CIT B 201 . ? 1_555 ? 54 AC7 11 LYS A 2 ? LYS A 102 . ? 1_455 ? 55 AC7 11 O65 A 1 ? O65 A 101 . ? 1_555 ? 56 AC7 11 LYS B 3 ? LYS B 103 . ? 1_555 ? 57 AC7 11 LYS B 6 ? LYS B 106 . ? 1_555 ? 58 AC7 11 CYS B 7 ? CYS B 107 . ? 1_555 ? 59 AC7 11 CYS B 10 ? CYS B 110 . ? 1_555 ? 60 AC7 11 CIT C . ? CIT A 201 . ? 1_555 ? 61 AC7 11 CIT D . ? CIT B 201 . ? 1_555 ? 62 AC7 11 HOH F . ? HOH B 301 . ? 1_555 ? 63 AC7 11 HOH F . ? HOH B 303 . ? 1_555 ? 64 AC7 11 HOH F . ? HOH B 304 . ? 1_555 ? # _pdbx_entry_details.entry_id 6Y14 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _phasing.method AB_INITIO # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CIT C1 C N N 1 CIT O1 O N N 2 CIT O2 O N N 3 CIT C2 C N N 4 CIT C3 C N N 5 CIT O7 O N N 6 CIT C4 C N N 7 CIT C5 C N N 8 CIT O3 O N N 9 CIT O4 O N N 10 CIT C6 C N N 11 CIT O5 O N N 12 CIT O6 O N N 13 CIT HO2 H N N 14 CIT H21 H N N 15 CIT H22 H N N 16 CIT HO7 H N N 17 CIT H41 H N N 18 CIT H42 H N N 19 CIT HO4 H N N 20 CIT HO6 H N N 21 CYS N N N N 22 CYS CA C N R 23 CYS C C N N 24 CYS O O N N 25 CYS CB C N N 26 CYS SG S N N 27 CYS OXT O N N 28 CYS H H N N 29 CYS H2 H N N 30 CYS HA H N N 31 CYS HB2 H N N 32 CYS HB3 H N N 33 CYS HG H N N 34 CYS HXT H N N 35 HOH O O N N 36 HOH H1 H N N 37 HOH H2 H N N 38 LEU N N N N 39 LEU CA C N S 40 LEU C C N N 41 LEU O O N N 42 LEU CB C N N 43 LEU CG C N N 44 LEU CD1 C N N 45 LEU CD2 C N N 46 LEU OXT O N N 47 LEU H H N N 48 LEU H2 H N N 49 LEU HA H N N 50 LEU HB2 H N N 51 LEU HB3 H N N 52 LEU HG H N N 53 LEU HD11 H N N 54 LEU HD12 H N N 55 LEU HD13 H N N 56 LEU HD21 H N N 57 LEU HD22 H N N 58 LEU HD23 H N N 59 LEU HXT H N N 60 LYS N N N N 61 LYS CA C N S 62 LYS C C N N 63 LYS O O N N 64 LYS CB C N N 65 LYS CG C N N 66 LYS CD C N N 67 LYS CE C N N 68 LYS NZ N N N 69 LYS OXT O N N 70 LYS H H N N 71 LYS H2 H N N 72 LYS HA H N N 73 LYS HB2 H N N 74 LYS HB3 H N N 75 LYS HG2 H N N 76 LYS HG3 H N N 77 LYS HD2 H N N 78 LYS HD3 H N N 79 LYS HE2 H N N 80 LYS HE3 H N N 81 LYS HZ1 H N N 82 LYS HZ2 H N N 83 LYS HZ3 H N N 84 LYS HXT H N N 85 NH2 N N N N 86 NH2 HN1 H N N 87 NH2 HN2 H N N 88 O65 CAA C N N 89 O65 CAB C Y N 90 O65 CAC C Y N 91 O65 CAD C Y N 92 O65 CAE C Y N 93 O65 CAF C Y N 94 O65 CAG C Y N 95 O65 CAH C N N 96 O65 CAJ C N N 97 O65 CAM C N N 98 O65 OAK O N N 99 O65 O1 O N N 100 O65 O2 O N N 101 O65 H1 H N N 102 O65 H2 H N N 103 O65 H3 H N N 104 O65 H4 H N N 105 O65 H5 H N N 106 O65 H6 H N N 107 O65 H7 H N N 108 O65 H9 H N N 109 O65 H10 H N N 110 O65 H11 H N N 111 O65 H12 H N N 112 O65 O3 O N N 113 O65 H8 H N N 114 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CIT C1 O1 doub N N 1 CIT C1 O2 sing N N 2 CIT C1 C2 sing N N 3 CIT O2 HO2 sing N N 4 CIT C2 C3 sing N N 5 CIT C2 H21 sing N N 6 CIT C2 H22 sing N N 7 CIT C3 O7 sing N N 8 CIT C3 C4 sing N N 9 CIT C3 C6 sing N N 10 CIT O7 HO7 sing N N 11 CIT C4 C5 sing N N 12 CIT C4 H41 sing N N 13 CIT C4 H42 sing N N 14 CIT C5 O3 doub N N 15 CIT C5 O4 sing N N 16 CIT O4 HO4 sing N N 17 CIT C6 O5 doub N N 18 CIT C6 O6 sing N N 19 CIT O6 HO6 sing N N 20 CYS N CA sing N N 21 CYS N H sing N N 22 CYS N H2 sing N N 23 CYS CA C sing N N 24 CYS CA CB sing N N 25 CYS CA HA sing N N 26 CYS C O doub N N 27 CYS C OXT sing N N 28 CYS CB SG sing N N 29 CYS CB HB2 sing N N 30 CYS CB HB3 sing N N 31 CYS SG HG sing N N 32 CYS OXT HXT sing N N 33 HOH O H1 sing N N 34 HOH O H2 sing N N 35 LEU N CA sing N N 36 LEU N H sing N N 37 LEU N H2 sing N N 38 LEU CA C sing N N 39 LEU CA CB sing N N 40 LEU CA HA sing N N 41 LEU C O doub N N 42 LEU C OXT sing N N 43 LEU CB CG sing N N 44 LEU CB HB2 sing N N 45 LEU CB HB3 sing N N 46 LEU CG CD1 sing N N 47 LEU CG CD2 sing N N 48 LEU CG HG sing N N 49 LEU CD1 HD11 sing N N 50 LEU CD1 HD12 sing N N 51 LEU CD1 HD13 sing N N 52 LEU CD2 HD21 sing N N 53 LEU CD2 HD22 sing N N 54 LEU CD2 HD23 sing N N 55 LEU OXT HXT sing N N 56 LYS N CA sing N N 57 LYS N H sing N N 58 LYS N H2 sing N N 59 LYS CA C sing N N 60 LYS CA CB sing N N 61 LYS CA HA sing N N 62 LYS C O doub N N 63 LYS C OXT sing N N 64 LYS CB CG sing N N 65 LYS CB HB2 sing N N 66 LYS CB HB3 sing N N 67 LYS CG CD sing N N 68 LYS CG HG2 sing N N 69 LYS CG HG3 sing N N 70 LYS CD CE sing N N 71 LYS CD HD2 sing N N 72 LYS CD HD3 sing N N 73 LYS CE NZ sing N N 74 LYS CE HE2 sing N N 75 LYS CE HE3 sing N N 76 LYS NZ HZ1 sing N N 77 LYS NZ HZ2 sing N N 78 LYS NZ HZ3 sing N N 79 LYS OXT HXT sing N N 80 NH2 N HN1 sing N N 81 NH2 N HN2 sing N N 82 O65 CAJ CAE sing N N 83 O65 CAJ OAK doub N N 84 O65 CAD CAE doub Y N 85 O65 CAD CAC sing Y N 86 O65 CAE CAF sing Y N 87 O65 CAM CAC sing N N 88 O65 CAC CAB doub Y N 89 O65 CAF CAG doub Y N 90 O65 CAB CAG sing Y N 91 O65 CAB CAA sing N N 92 O65 CAG CAH sing N N 93 O65 CAH O1 sing N N 94 O65 CAM O2 sing N N 95 O65 CAA H1 sing N N 96 O65 CAA H2 sing N N 97 O65 CAA H3 sing N N 98 O65 CAD H4 sing N N 99 O65 CAF H5 sing N N 100 O65 CAH H6 sing N N 101 O65 CAH H7 sing N N 102 O65 CAM H9 sing N N 103 O65 CAM H10 sing N N 104 O65 O1 H11 sing N N 105 O65 O2 H12 sing N N 106 O65 CAJ O3 sing N N 107 O65 O3 H8 sing N N 108 # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6Y14 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.060672 _atom_sites.fract_transf_matrix[1][2] 0.012852 _atom_sites.fract_transf_matrix[1][3] 0.007862 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039001 _atom_sites.fract_transf_matrix[2][3] 0.016004 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036168 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_