HEADER PEPTIDE BINDING PROTEIN 12-FEB-20 6Y1J TITLE 14-3-3 SIGMA IN COMPLEX WITH IKAPPABALPHA PS63 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NF-KAPPA-B INHIBITOR ALPHA; COMPND 8 CHAIN: P; COMPND 9 SYNONYM: I-KAPPA-B-ALPHA,IKAPPABALPHA,MAJOR HISTOCOMPATIBILITY COMPND 10 COMPLEX ENHANCER-BINDING PROTEIN MAD3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 14-3-3 SIGMA, IKBA, NF-KB, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WOLTER,C.OTTMANN REVDAT 3 24-JAN-24 6Y1J 1 LINK REVDAT 2 01-APR-20 6Y1J 1 JRNL REVDAT 1 04-MAR-20 6Y1J 0 JRNL AUTH M.WOLTER,D.L.SANTO,P.HERMAN,A.BALLONE,F.CENTORRINO,T.OBSIL, JRNL AUTH 2 C.OTTMANN JRNL TITL INTERACTION OF AN I KAPPA B ALPHA PEPTIDE WITH 14-3-3. JRNL REF ACS OMEGA V. 5 5380 2020 JRNL REFN ESSN 2470-1343 JRNL PMID 32201828 JRNL DOI 10.1021/ACSOMEGA.9B04413 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 108654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4920 - 3.5013 1.00 3668 190 0.1676 0.1851 REMARK 3 2 3.5013 - 2.7792 1.00 3525 186 0.1595 0.1751 REMARK 3 3 2.7792 - 2.4279 1.00 3499 179 0.1596 0.1639 REMARK 3 4 2.4279 - 2.2060 1.00 3508 158 0.1474 0.1520 REMARK 3 5 2.2060 - 2.0478 1.00 3464 188 0.1463 0.1620 REMARK 3 6 2.0478 - 1.9271 1.00 3456 186 0.1518 0.1754 REMARK 3 7 1.9271 - 1.8306 1.00 3434 190 0.1580 0.1657 REMARK 3 8 1.8306 - 1.7509 1.00 3462 189 0.1549 0.1700 REMARK 3 9 1.7509 - 1.6835 1.00 3434 189 0.1515 0.1648 REMARK 3 10 1.6835 - 1.6254 1.00 3442 166 0.1557 0.1587 REMARK 3 11 1.6254 - 1.5746 1.00 3437 184 0.1528 0.1797 REMARK 3 12 1.5746 - 1.5296 1.00 3462 150 0.1546 0.1607 REMARK 3 13 1.5296 - 1.4893 1.00 3409 194 0.1500 0.1739 REMARK 3 14 1.4893 - 1.4530 1.00 3429 179 0.1541 0.1537 REMARK 3 15 1.4530 - 1.4199 1.00 3408 189 0.1668 0.1793 REMARK 3 16 1.4199 - 1.3897 1.00 3425 188 0.1708 0.1961 REMARK 3 17 1.3897 - 1.3619 1.00 3379 192 0.1867 0.2095 REMARK 3 18 1.3619 - 1.3362 1.00 3408 172 0.1818 0.2094 REMARK 3 19 1.3362 - 1.3123 1.00 3449 177 0.1898 0.2090 REMARK 3 20 1.3123 - 1.2901 1.00 3394 190 0.1912 0.2091 REMARK 3 21 1.2901 - 1.2693 1.00 3434 187 0.2025 0.2089 REMARK 3 22 1.2693 - 1.2497 1.00 3416 175 0.2266 0.2266 REMARK 3 23 1.2497 - 1.2314 1.00 3408 178 0.2196 0.2524 REMARK 3 24 1.2314 - 1.2140 1.00 3402 176 0.2420 0.2335 REMARK 3 25 1.2140 - 1.1976 1.00 3379 198 0.2332 0.2536 REMARK 3 26 1.1976 - 1.1821 1.00 3419 191 0.2464 0.2541 REMARK 3 27 1.1821 - 1.1673 1.00 3414 189 0.2473 0.2334 REMARK 3 28 1.1673 - 1.1532 1.00 3391 151 0.2706 0.2971 REMARK 3 29 1.1532 - 1.1398 1.00 3421 182 0.2696 0.2663 REMARK 3 30 1.1398 - 1.1270 1.00 3417 198 0.2765 0.2989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2181 REMARK 3 ANGLE : 0.971 2952 REMARK 3 CHIRALITY : 0.185 311 REMARK 3 PLANARITY : 0.006 392 REMARK 3 DIHEDRAL : 21.554 846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108705 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.127 REMARK 200 RESOLUTION RANGE LOW (A) : 45.492 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FR3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M NA-HEPES PH 7.1, 27% PEG400, REMARK 280 0.19 M CALCIUM CHLORIDE, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.23000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.23000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.24000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.23000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.91000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.23000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.91000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 232 REMARK 465 ASP A 233 REMARK 465 ASN A 234 REMARK 465 ALA A 235 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 ALA A 242 REMARK 465 PRO A 243 REMARK 465 GLN A 244 REMARK 465 GLU A 245 REMARK 465 PRO A 246 REMARK 465 GLN A 247 REMARK 465 SER A 248 REMARK 465 ACE P 56 REMARK 465 GLN P 57 REMARK 465 GLU P 58 REMARK 465 VAL P 59 REMARK 465 PRO P 60 REMARK 465 ARG P 61 REMARK 465 GLN P 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 LYS A 77 CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 LYS A 140 CE NZ REMARK 470 LYS A 160 CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 75.26 -104.91 REMARK 500 HIS A 106 36.04 -144.44 REMARK 500 THR A 136 -3.57 -140.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 51.3 REMARK 620 3 GLU A 110 O 89.9 91.2 REMARK 620 4 GLU A 110 O 81.5 83.7 8.9 REMARK 620 5 GLU A 188 OE2 87.6 122.4 44.4 47.3 REMARK 620 6 HOH A 552 O 146.9 158.5 98.5 107.1 76.8 REMARK 620 7 HOH A 602 O 131.3 80.4 84.4 87.9 118.5 81.6 REMARK 620 8 HOH A 638 O 89.7 83.6 173.7 167.3 141.9 85.2 91.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 75 OE1 REMARK 620 2 GLU A 161 O 71.7 REMARK 620 3 HOH A 485 O 71.0 0.9 REMARK 620 4 HOH A 572 O 71.4 2.8 3.3 REMARK 620 5 HOH A 622 O 69.4 2.6 2.3 2.6 REMARK 620 6 HOH A 635 O 70.4 3.2 3.4 1.1 2.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 587 O REMARK 620 2 HOH A 624 O 121.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 311 DBREF 6Y1J A 1 248 UNP P31947 1433S_HUMAN 1 248 DBREF 6Y1J P 57 69 UNP P25963 IKBA_HUMAN 57 69 SEQADV 6Y1J GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6Y1J ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6Y1J MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6Y1J GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6Y1J SER A 0 UNP P31947 EXPRESSION TAG SEQADV 6Y1J ACE P 56 UNP P25963 ACETYLATION SEQRES 1 A 253 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 253 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 253 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 253 GLU LEU SER CSO GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 253 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 253 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 253 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 253 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 253 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 253 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 253 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 253 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 253 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 253 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 253 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 253 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 253 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 253 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 253 TRP THR ALA ASP ASN ALA GLY GLU GLU GLY GLY GLU ALA SEQRES 20 A 253 PRO GLN GLU PRO GLN SER SEQRES 1 P 14 ACE GLN GLU VAL PRO ARG GLY SEP GLU PRO TRP LYS GLN SEQRES 2 P 14 GLN MODRES 6Y1J CSO A 38 CYS MODIFIED RESIDUE MODRES 6Y1J SEP P 63 SER MODIFIED RESIDUE HET CSO A 38 12 HET SEP P 63 14 HET CA A 301 1 HET CL A 302 1 HET MG A 303 1 HET GOL A 304 14 HET GOL A 305 14 HET GOL A 306 14 HET GOL A 307 14 HET GOL A 308 14 HET GOL A 309 14 HET GOL A 310 14 HET CA A 311 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SEP PHOSPHOSERINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 CA 2(CA 2+) FORMUL 4 CL CL 1- FORMUL 5 MG MG 2+ FORMUL 6 GOL 7(C3 H8 O3) FORMUL 14 HOH *334(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 LYS A 32 1 15 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 LINK C SER A 37 N CSO A 38 1555 1555 1.32 LINK C CSO A 38 N GLU A 39 1555 1555 1.32 LINK C GLY P 62 N SEP P 63 1555 1555 1.33 LINK C SEP P 63 N AGLU P 64 1555 1555 1.33 LINK C SEP P 63 N BGLU P 64 1555 1555 1.33 LINK OE1 GLU A 35 CA CA A 301 1555 1555 2.60 LINK OE2 GLU A 35 CA CA A 301 1555 1555 2.42 LINK OE1 GLU A 75 MG MG A 303 1555 7545 2.42 LINK O AGLU A 110 CA CA A 301 1555 1555 2.29 LINK O BGLU A 110 CA CA A 301 1555 1555 2.32 LINK O GLU A 161 MG MG A 303 1555 1555 2.29 LINK OE2 GLU A 188 CA CA A 301 1555 6555 2.35 LINK CA CA A 301 O HOH A 552 1555 6554 2.40 LINK CA CA A 301 O HOH A 602 1555 1555 2.34 LINK CA CA A 301 O HOH A 638 1555 1555 2.41 LINK MG MG A 303 O HOH A 485 1555 7555 2.40 LINK MG MG A 303 O HOH A 572 1555 1555 2.46 LINK MG MG A 303 O HOH A 622 1555 1555 2.40 LINK MG MG A 303 O HOH A 635 1555 6554 2.40 LINK CA CA A 311 O HOH A 587 1555 1555 2.29 LINK CA CA A 311 O HOH A 624 1555 1555 3.04 CISPEP 1 SER A 105 HIS A 106 0 7.58 SITE 1 AC1 6 GLU A 35 GLU A 110 GLU A 188 HOH A 552 SITE 2 AC1 6 HOH A 602 HOH A 638 SITE 1 AC2 3 LYS A 9 HOH A 660 HOH A 688 SITE 1 AC3 6 GLU A 75 GLU A 161 HOH A 485 HOH A 572 SITE 2 AC3 6 HOH A 622 HOH A 635 SITE 1 AC4 5 LYS A 124 TYR A 128 SER A 146 HOH A 454 SITE 2 AC4 5 HOH A 461 SITE 1 AC5 6 GLY A -4 GLU A 76 GLY A 78 PRO A 79 SITE 2 AC5 6 ARG A 82 HOH A 484 SITE 1 AC6 5 TYR A 48 VAL A 95 THR A 98 HOH A 532 SITE 2 AC6 5 HOH A 651 SITE 1 AC7 6 TYR A 19 ASN A 50 HOH A 440 HOH A 563 SITE 2 AC7 6 TRP P 66 LYS P 67 SITE 1 AC8 6 ASP A 97 LEU A 100 TYR A 128 HOH A 402 SITE 2 AC8 6 HOH A 416 HOH A 535 SITE 1 AC9 5 ARG A 148 ASP A 211 ASP A 215 HOH A 430 SITE 2 AC9 5 HOH A 566 SITE 1 AD1 7 GLU A 110 MET A 202 LEU A 205 TYR A 213 SITE 2 AD1 7 HOH A 403 HOH A 428 HOH A 441 SITE 1 AD2 4 TYR A 19 GLU A 20 HOH A 587 HOH A 624 CRYST1 82.460 111.820 62.480 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016005 0.00000