data_6Y22 # _entry.id 6Y22 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.333 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6Y22 WWPDB D_1292106723 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6Y22 _pdbx_database_status.recvd_initial_deposition_date 2020-02-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gabrielssen, M.' 1 0000-0002-9848-2276 'Buetow, L.' 2 0000-0003-4951-8057 'Huang, D.T.' 3 0000-0002-6192-259X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abc0629 _citation.pdbx_database_id_PubMed 32937373 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ahmed, S.F.' 1 ? primary 'Buetow, L.' 2 ? primary 'Gabrielsen, M.' 3 ? primary 'Lilla, S.' 4 ? primary 'Chatrin, C.' 5 ? primary 'Sibbet, G.J.' 6 ? primary 'Zanivan, S.' 7 ? primary 'Huang, D.T.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6Y22 _cell.details ? _cell.formula_units_Z ? _cell.length_a 106.418 _cell.length_a_esd ? _cell.length_b 106.418 _cell.length_b_esd ? _cell.length_c 74.669 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable E3 ubiquitin-protein ligase DTX2' 25934.375 1 2.3.2.27 ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein deltex-2,hDTX2,RING finger protein 58,RING-type E3 ubiquitin transferase DTX2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSEPEPEQVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSL QCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRK VLELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GSEPEPEQVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSL QCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRK VLELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 PRO n 1 5 GLU n 1 6 PRO n 1 7 GLU n 1 8 GLN n 1 9 VAL n 1 10 ILE n 1 11 LYS n 1 12 ASN n 1 13 TYR n 1 14 THR n 1 15 GLU n 1 16 GLU n 1 17 LEU n 1 18 LYS n 1 19 VAL n 1 20 PRO n 1 21 PRO n 1 22 ASP n 1 23 GLU n 1 24 ASP n 1 25 CYS n 1 26 ILE n 1 27 ILE n 1 28 CYS n 1 29 MET n 1 30 GLU n 1 31 LYS n 1 32 LEU n 1 33 SER n 1 34 THR n 1 35 ALA n 1 36 SER n 1 37 GLY n 1 38 TYR n 1 39 SER n 1 40 ASP n 1 41 VAL n 1 42 THR n 1 43 ASP n 1 44 SER n 1 45 LYS n 1 46 ALA n 1 47 ILE n 1 48 GLY n 1 49 SER n 1 50 LEU n 1 51 ALA n 1 52 VAL n 1 53 GLY n 1 54 HIS n 1 55 LEU n 1 56 THR n 1 57 LYS n 1 58 CYS n 1 59 SER n 1 60 HIS n 1 61 ALA n 1 62 PHE n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 CYS n 1 67 LEU n 1 68 LEU n 1 69 ALA n 1 70 MET n 1 71 TYR n 1 72 CYS n 1 73 ASN n 1 74 GLY n 1 75 ASN n 1 76 LYS n 1 77 ASP n 1 78 GLY n 1 79 SER n 1 80 LEU n 1 81 GLN n 1 82 CYS n 1 83 PRO n 1 84 SER n 1 85 CYS n 1 86 LYS n 1 87 THR n 1 88 ILE n 1 89 TYR n 1 90 GLY n 1 91 GLU n 1 92 LYS n 1 93 THR n 1 94 GLY n 1 95 THR n 1 96 GLN n 1 97 PRO n 1 98 GLN n 1 99 GLY n 1 100 LYS n 1 101 MET n 1 102 GLU n 1 103 VAL n 1 104 LEU n 1 105 ARG n 1 106 PHE n 1 107 GLN n 1 108 MET n 1 109 SER n 1 110 LEU n 1 111 PRO n 1 112 GLY n 1 113 HIS n 1 114 GLU n 1 115 ASP n 1 116 CYS n 1 117 GLY n 1 118 THR n 1 119 ILE n 1 120 LEU n 1 121 ILE n 1 122 VAL n 1 123 TYR n 1 124 SER n 1 125 ILE n 1 126 PRO n 1 127 HIS n 1 128 GLY n 1 129 ILE n 1 130 GLN n 1 131 GLY n 1 132 PRO n 1 133 GLU n 1 134 HIS n 1 135 PRO n 1 136 ASN n 1 137 PRO n 1 138 GLY n 1 139 LYS n 1 140 PRO n 1 141 PHE n 1 142 THR n 1 143 ALA n 1 144 ARG n 1 145 GLY n 1 146 PHE n 1 147 PRO n 1 148 ARG n 1 149 GLN n 1 150 CYS n 1 151 TYR n 1 152 LEU n 1 153 PRO n 1 154 ASP n 1 155 ASN n 1 156 ALA n 1 157 GLN n 1 158 GLY n 1 159 ARG n 1 160 LYS n 1 161 VAL n 1 162 LEU n 1 163 GLU n 1 164 LEU n 1 165 LEU n 1 166 LYS n 1 167 VAL n 1 168 ALA n 1 169 TRP n 1 170 LYS n 1 171 ARG n 1 172 ARG n 1 173 LEU n 1 174 ILE n 1 175 PHE n 1 176 THR n 1 177 VAL n 1 178 GLY n 1 179 THR n 1 180 SER n 1 181 SER n 1 182 THR n 1 183 THR n 1 184 GLY n 1 185 GLU n 1 186 THR n 1 187 ASP n 1 188 THR n 1 189 VAL n 1 190 VAL n 1 191 TRP n 1 192 ASN n 1 193 GLU n 1 194 ILE n 1 195 HIS n 1 196 HIS n 1 197 LYS n 1 198 THR n 1 199 GLU n 1 200 MET n 1 201 ASP n 1 202 ARG n 1 203 ASN n 1 204 ILE n 1 205 THR n 1 206 GLY n 1 207 HIS n 1 208 GLY n 1 209 TYR n 1 210 PRO n 1 211 ASP n 1 212 PRO n 1 213 ASN n 1 214 TYR n 1 215 LEU n 1 216 GLN n 1 217 ASN n 1 218 VAL n 1 219 LEU n 1 220 ALA n 1 221 GLU n 1 222 LEU n 1 223 ALA n 1 224 ALA n 1 225 GLN n 1 226 GLY n 1 227 VAL n 1 228 THR n 1 229 GLU n 1 230 ASP n 1 231 CYS n 1 232 LEU n 1 233 GLU n 1 234 GLN n 1 235 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 235 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DTX2, KIAA1528, RNF58' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DTX2_HUMAN _struct_ref.pdbx_db_accession Q86UW9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EPEPEQVIKNYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQC PSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVL ELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ ; _struct_ref.pdbx_align_begin 390 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6Y22 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 235 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86UW9 _struct_ref_seq.db_align_beg 390 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 622 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 390 _struct_ref_seq.pdbx_auth_seq_align_end 622 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6Y22 GLY A 1 ? UNP Q86UW9 ? ? 'expression tag' 388 1 1 6Y22 SER A 2 ? UNP Q86UW9 ? ? 'expression tag' 389 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Y22 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Morpheus condition 60: 0.12 M ethylene glycols (0.3M Diethylene glycol; 0.3M Triethylene glycol; 0.3M Tetraethylene glycol; 0.3M Pentaethylene glycol), 0.1 M Buffer system 3 (1 M Tris-Bicine pH 8.5), 37.5% Precipitation mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-24 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97997 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97997 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 38.32 _reflns.entry_id 6Y22 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.069 _reflns.d_resolution_low 92.16 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29929 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 1.36 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.037 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.0690 _reflns_shell.d_res_low 2.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2130 _reflns_shell.percent_possible_all 97.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.748 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.36 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.973 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 129.230 _refine.B_iso_mean 55.9843 _refine.B_iso_min 28.870 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6Y22 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0690 _refine.ls_d_res_low 29.0080 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29926 _refine.ls_number_reflns_R_free 1434 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4200 _refine.ls_percent_reflns_R_free 4.7900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1807 _refine.ls_R_factor_R_free 0.2083 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1793 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.0600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0690 _refine_hist.d_res_low 29.0080 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1816 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 227 _refine_hist.pdbx_B_iso_mean_ligand 48.58 _refine_hist.pdbx_B_iso_mean_solvent 55.29 _refine_hist.pdbx_number_atoms_protein 1722 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1785 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.836 ? 2430 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 272 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 318 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.158 ? 1076 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0690 2.1430 . . 97 2775 97.0000 . . . 0.3218 0.0000 0.2863 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1430 2.2287 . . 146 2790 99.0000 . . . 0.2997 0.0000 0.2384 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2287 2.3301 . . 164 2809 99.0000 . . . 0.2891 0.0000 0.2305 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3301 2.4529 . . 181 2791 100.0000 . . . 0.2600 0.0000 0.2121 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4529 2.6065 . . 158 2819 100.0000 . . . 0.2626 0.0000 0.2054 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6065 2.8076 . . 134 2841 100.0000 . . . 0.2292 0.0000 0.1962 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8076 3.0899 . . 118 2897 100.0000 . . . 0.2298 0.0000 0.2111 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0899 3.5363 . . 124 2887 100.0000 . . . 0.2092 0.0000 0.1861 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5363 4.4528 . . 154 2887 100.0000 . . . 0.1807 0.0000 0.1468 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4528 29.0080 . . 158 2996 100.0000 . . . 0.1716 0.0000 0.1525 . . . . . . . . . . . # _struct.entry_id 6Y22 _struct.title 'RING-DTC domains of Deltex 2, Form 1' _struct.pdbx_descriptor 'Probable E3 ubiquitin-protein ligase DTX2 (E.C.2.3.2.27)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Y22 _struct_keywords.text 'Ubiquitination, E3 RING ligase, Ubiquitin, PAR-binding, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 5 ? TYR A 13 ? GLU A 392 TYR A 400 1 ? 9 HELX_P HELX_P2 AA2 LEU A 64 ? GLY A 74 ? LEU A 451 GLY A 461 1 ? 11 HELX_P HELX_P3 AA3 ASN A 155 ? ARG A 171 ? ASN A 542 ARG A 558 1 ? 17 HELX_P HELX_P4 AA4 ASN A 213 ? GLN A 225 ? ASN A 600 GLN A 612 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 25 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 412 A ZN 702 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc2 metalc ? ? A CYS 28 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 415 A ZN 702 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc3 metalc ? ? A CYS 58 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 445 A ZN 701 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc4 metalc ? ? A HIS 60 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 447 A ZN 701 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc5 metalc ? ? A HIS 63 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 450 A ZN 702 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc6 metalc ? ? A CYS 66 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 453 A ZN 702 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc7 metalc ? ? A CYS 82 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 469 A ZN 701 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc8 metalc ? ? A CYS 85 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 472 A ZN 701 1_555 ? ? ? ? ? ? ? 2.427 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 146 A . ? PHE 533 A PRO 147 A ? PRO 534 A 1 -1.03 2 TYR 209 A . ? TYR 596 A PRO 210 A ? PRO 597 A 1 0.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 14 ? GLU A 16 ? THR A 401 GLU A 403 AA1 2 VAL A 52 ? LEU A 55 ? VAL A 439 LEU A 442 AA1 3 ALA A 61 ? HIS A 63 ? ALA A 448 HIS A 450 AA2 1 LEU A 80 ? GLN A 81 ? LEU A 467 GLN A 468 AA2 2 ILE A 88 ? TYR A 89 ? ILE A 475 TYR A 476 AA3 1 LYS A 100 ? PHE A 106 ? LYS A 487 PHE A 493 AA3 2 THR A 118 ? SER A 124 ? THR A 505 SER A 511 AA3 3 ARG A 148 ? PRO A 153 ? ARG A 535 PRO A 540 AA4 1 GLY A 128 ? ILE A 129 ? GLY A 515 ILE A 516 AA4 2 PRO A 140 ? PHE A 141 ? PRO A 527 PHE A 528 AA5 1 PHE A 175 ? GLY A 178 ? PHE A 562 GLY A 565 AA5 2 THR A 188 ? TRP A 191 ? THR A 575 TRP A 578 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 15 ? N GLU A 402 O HIS A 54 ? O HIS A 441 AA1 2 3 N GLY A 53 ? N GLY A 440 O PHE A 62 ? O PHE A 449 AA2 1 2 N LEU A 80 ? N LEU A 467 O TYR A 89 ? O TYR A 476 AA3 1 2 N LEU A 104 ? N LEU A 491 O LEU A 120 ? O LEU A 507 AA3 2 3 N ILE A 119 ? N ILE A 506 O LEU A 152 ? O LEU A 539 AA4 1 2 N GLY A 128 ? N GLY A 515 O PHE A 141 ? O PHE A 528 AA5 1 2 N GLY A 178 ? N GLY A 565 O THR A 188 ? O THR A 575 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 701 ? 5 'binding site for residue ZN A 701' AC2 Software A ZN 702 ? 4 'binding site for residue ZN A 702' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 58 ? CYS A 445 . ? 1_555 ? 2 AC1 5 HIS A 60 ? HIS A 447 . ? 1_555 ? 3 AC1 5 CYS A 82 ? CYS A 469 . ? 1_555 ? 4 AC1 5 SER A 84 ? SER A 471 . ? 1_555 ? 5 AC1 5 CYS A 85 ? CYS A 472 . ? 1_555 ? 6 AC2 4 CYS A 25 ? CYS A 412 . ? 1_555 ? 7 AC2 4 CYS A 28 ? CYS A 415 . ? 1_555 ? 8 AC2 4 HIS A 63 ? HIS A 450 . ? 1_555 ? 9 AC2 4 CYS A 66 ? CYS A 453 . ? 1_555 ? # _atom_sites.entry_id 6Y22 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009397 _atom_sites.fract_transf_matrix[1][2] 0.005425 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010851 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013392 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 ? ? 2.14387 29.76375 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 388 ? ? ? A . n A 1 2 SER 2 389 ? ? ? A . n A 1 3 GLU 3 390 ? ? ? A . n A 1 4 PRO 4 391 391 PRO PRO A . n A 1 5 GLU 5 392 392 GLU GLU A . n A 1 6 PRO 6 393 393 PRO PRO A . n A 1 7 GLU 7 394 394 GLU GLU A . n A 1 8 GLN 8 395 395 GLN GLN A . n A 1 9 VAL 9 396 396 VAL VAL A . n A 1 10 ILE 10 397 397 ILE ILE A . n A 1 11 LYS 11 398 398 LYS LYS A . n A 1 12 ASN 12 399 399 ASN ASN A . n A 1 13 TYR 13 400 400 TYR TYR A . n A 1 14 THR 14 401 401 THR THR A . n A 1 15 GLU 15 402 402 GLU GLU A . n A 1 16 GLU 16 403 403 GLU GLU A . n A 1 17 LEU 17 404 404 LEU LEU A . n A 1 18 LYS 18 405 405 LYS LYS A . n A 1 19 VAL 19 406 406 VAL VAL A . n A 1 20 PRO 20 407 407 PRO PRO A . n A 1 21 PRO 21 408 408 PRO PRO A . n A 1 22 ASP 22 409 409 ASP ASP A . n A 1 23 GLU 23 410 410 GLU GLU A . n A 1 24 ASP 24 411 411 ASP ASP A . n A 1 25 CYS 25 412 412 CYS CYS A . n A 1 26 ILE 26 413 413 ILE ILE A . n A 1 27 ILE 27 414 414 ILE ILE A . n A 1 28 CYS 28 415 415 CYS CYS A . n A 1 29 MET 29 416 416 MET MET A . n A 1 30 GLU 30 417 417 GLU GLU A . n A 1 31 LYS 31 418 418 LYS LYS A . n A 1 32 LEU 32 419 419 LEU LEU A . n A 1 33 SER 33 420 420 SER SER A . n A 1 34 THR 34 421 421 THR THR A . n A 1 35 ALA 35 422 422 ALA ALA A . n A 1 36 SER 36 423 423 SER SER A . n A 1 37 GLY 37 424 424 GLY GLY A . n A 1 38 TYR 38 425 425 TYR TYR A . n A 1 39 SER 39 426 426 SER SER A . n A 1 40 ASP 40 427 427 ASP ASP A . n A 1 41 VAL 41 428 428 VAL VAL A . n A 1 42 THR 42 429 429 THR THR A . n A 1 43 ASP 43 430 430 ASP ASP A . n A 1 44 SER 44 431 431 SER SER A . n A 1 45 LYS 45 432 432 LYS LYS A . n A 1 46 ALA 46 433 433 ALA ALA A . n A 1 47 ILE 47 434 434 ILE ILE A . n A 1 48 GLY 48 435 435 GLY GLY A . n A 1 49 SER 49 436 436 SER SER A . n A 1 50 LEU 50 437 437 LEU LEU A . n A 1 51 ALA 51 438 438 ALA ALA A . n A 1 52 VAL 52 439 439 VAL VAL A . n A 1 53 GLY 53 440 440 GLY GLY A . n A 1 54 HIS 54 441 441 HIS HIS A . n A 1 55 LEU 55 442 442 LEU LEU A . n A 1 56 THR 56 443 443 THR THR A . n A 1 57 LYS 57 444 444 LYS LYS A . n A 1 58 CYS 58 445 445 CYS CYS A . n A 1 59 SER 59 446 446 SER SER A . n A 1 60 HIS 60 447 447 HIS HIS A . n A 1 61 ALA 61 448 448 ALA ALA A . n A 1 62 PHE 62 449 449 PHE PHE A . n A 1 63 HIS 63 450 450 HIS HIS A . n A 1 64 LEU 64 451 451 LEU LEU A . n A 1 65 LEU 65 452 452 LEU LEU A . n A 1 66 CYS 66 453 453 CYS CYS A . n A 1 67 LEU 67 454 454 LEU LEU A . n A 1 68 LEU 68 455 455 LEU LEU A . n A 1 69 ALA 69 456 456 ALA ALA A . n A 1 70 MET 70 457 457 MET MET A . n A 1 71 TYR 71 458 458 TYR TYR A . n A 1 72 CYS 72 459 459 CYS CYS A . n A 1 73 ASN 73 460 460 ASN ASN A . n A 1 74 GLY 74 461 461 GLY GLY A . n A 1 75 ASN 75 462 462 ASN ASN A . n A 1 76 LYS 76 463 463 LYS LYS A . n A 1 77 ASP 77 464 464 ASP ASP A . n A 1 78 GLY 78 465 465 GLY GLY A . n A 1 79 SER 79 466 466 SER SER A . n A 1 80 LEU 80 467 467 LEU LEU A . n A 1 81 GLN 81 468 468 GLN GLN A . n A 1 82 CYS 82 469 469 CYS CYS A . n A 1 83 PRO 83 470 470 PRO PRO A . n A 1 84 SER 84 471 471 SER SER A . n A 1 85 CYS 85 472 472 CYS CYS A . n A 1 86 LYS 86 473 473 LYS LYS A . n A 1 87 THR 87 474 474 THR THR A . n A 1 88 ILE 88 475 475 ILE ILE A . n A 1 89 TYR 89 476 476 TYR TYR A . n A 1 90 GLY 90 477 477 GLY GLY A . n A 1 91 GLU 91 478 478 GLU GLU A . n A 1 92 LYS 92 479 479 LYS LYS A . n A 1 93 THR 93 480 480 THR THR A . n A 1 94 GLY 94 481 481 GLY GLY A . n A 1 95 THR 95 482 482 THR THR A . n A 1 96 GLN 96 483 483 GLN GLN A . n A 1 97 PRO 97 484 484 PRO PRO A . n A 1 98 GLN 98 485 485 GLN GLN A . n A 1 99 GLY 99 486 486 GLY GLY A . n A 1 100 LYS 100 487 487 LYS LYS A . n A 1 101 MET 101 488 488 MET MET A . n A 1 102 GLU 102 489 489 GLU GLU A . n A 1 103 VAL 103 490 490 VAL VAL A . n A 1 104 LEU 104 491 491 LEU LEU A . n A 1 105 ARG 105 492 492 ARG ARG A . n A 1 106 PHE 106 493 493 PHE PHE A . n A 1 107 GLN 107 494 494 GLN GLN A . n A 1 108 MET 108 495 495 MET MET A . n A 1 109 SER 109 496 496 SER SER A . n A 1 110 LEU 110 497 497 LEU LEU A . n A 1 111 PRO 111 498 498 PRO PRO A . n A 1 112 GLY 112 499 499 GLY GLY A . n A 1 113 HIS 113 500 500 HIS HIS A . n A 1 114 GLU 114 501 501 GLU GLU A . n A 1 115 ASP 115 502 502 ASP ASP A . n A 1 116 CYS 116 503 503 CYS CYS A . n A 1 117 GLY 117 504 504 GLY GLY A . n A 1 118 THR 118 505 505 THR THR A . n A 1 119 ILE 119 506 506 ILE ILE A . n A 1 120 LEU 120 507 507 LEU LEU A . n A 1 121 ILE 121 508 508 ILE ILE A . n A 1 122 VAL 122 509 509 VAL VAL A . n A 1 123 TYR 123 510 510 TYR TYR A . n A 1 124 SER 124 511 511 SER SER A . n A 1 125 ILE 125 512 512 ILE ILE A . n A 1 126 PRO 126 513 513 PRO PRO A . n A 1 127 HIS 127 514 514 HIS HIS A . n A 1 128 GLY 128 515 515 GLY GLY A . n A 1 129 ILE 129 516 516 ILE ILE A . n A 1 130 GLN 130 517 517 GLN GLN A . n A 1 131 GLY 131 518 518 GLY GLY A . n A 1 132 PRO 132 519 519 PRO PRO A . n A 1 133 GLU 133 520 520 GLU GLU A . n A 1 134 HIS 134 521 521 HIS HIS A . n A 1 135 PRO 135 522 522 PRO PRO A . n A 1 136 ASN 136 523 523 ASN ASN A . n A 1 137 PRO 137 524 524 PRO PRO A . n A 1 138 GLY 138 525 525 GLY GLY A . n A 1 139 LYS 139 526 526 LYS LYS A . n A 1 140 PRO 140 527 527 PRO PRO A . n A 1 141 PHE 141 528 528 PHE PHE A . n A 1 142 THR 142 529 529 THR THR A . n A 1 143 ALA 143 530 530 ALA ALA A . n A 1 144 ARG 144 531 531 ARG ARG A . n A 1 145 GLY 145 532 532 GLY GLY A . n A 1 146 PHE 146 533 533 PHE PHE A . n A 1 147 PRO 147 534 534 PRO PRO A . n A 1 148 ARG 148 535 535 ARG ARG A . n A 1 149 GLN 149 536 536 GLN GLN A . n A 1 150 CYS 150 537 537 CYS CYS A . n A 1 151 TYR 151 538 538 TYR TYR A . n A 1 152 LEU 152 539 539 LEU LEU A . n A 1 153 PRO 153 540 540 PRO PRO A . n A 1 154 ASP 154 541 541 ASP ASP A . n A 1 155 ASN 155 542 542 ASN ASN A . n A 1 156 ALA 156 543 543 ALA ALA A . n A 1 157 GLN 157 544 544 GLN GLN A . n A 1 158 GLY 158 545 545 GLY GLY A . n A 1 159 ARG 159 546 546 ARG ARG A . n A 1 160 LYS 160 547 547 LYS LYS A . n A 1 161 VAL 161 548 548 VAL VAL A . n A 1 162 LEU 162 549 549 LEU LEU A . n A 1 163 GLU 163 550 550 GLU GLU A . n A 1 164 LEU 164 551 551 LEU LEU A . n A 1 165 LEU 165 552 552 LEU LEU A . n A 1 166 LYS 166 553 553 LYS LYS A . n A 1 167 VAL 167 554 554 VAL VAL A . n A 1 168 ALA 168 555 555 ALA ALA A . n A 1 169 TRP 169 556 556 TRP TRP A . n A 1 170 LYS 170 557 557 LYS LYS A . n A 1 171 ARG 171 558 558 ARG ARG A . n A 1 172 ARG 172 559 559 ARG ARG A . n A 1 173 LEU 173 560 560 LEU LEU A . n A 1 174 ILE 174 561 561 ILE ILE A . n A 1 175 PHE 175 562 562 PHE PHE A . n A 1 176 THR 176 563 563 THR THR A . n A 1 177 VAL 177 564 564 VAL VAL A . n A 1 178 GLY 178 565 565 GLY GLY A . n A 1 179 THR 179 566 566 THR THR A . n A 1 180 SER 180 567 567 SER SER A . n A 1 181 SER 181 568 568 SER SER A . n A 1 182 THR 182 569 569 THR THR A . n A 1 183 THR 183 570 570 THR THR A . n A 1 184 GLY 184 571 571 GLY GLY A . n A 1 185 GLU 185 572 572 GLU GLU A . n A 1 186 THR 186 573 573 THR THR A . n A 1 187 ASP 187 574 574 ASP ASP A . n A 1 188 THR 188 575 575 THR THR A . n A 1 189 VAL 189 576 576 VAL VAL A . n A 1 190 VAL 190 577 577 VAL VAL A . n A 1 191 TRP 191 578 578 TRP TRP A . n A 1 192 ASN 192 579 579 ASN ASN A . n A 1 193 GLU 193 580 580 GLU GLU A . n A 1 194 ILE 194 581 581 ILE ILE A . n A 1 195 HIS 195 582 582 HIS HIS A . n A 1 196 HIS 196 583 583 HIS HIS A . n A 1 197 LYS 197 584 584 LYS LYS A . n A 1 198 THR 198 585 585 THR THR A . n A 1 199 GLU 199 586 586 GLU GLU A . n A 1 200 MET 200 587 587 MET MET A . n A 1 201 ASP 201 588 588 ASP ASP A . n A 1 202 ARG 202 589 589 ARG ARG A . n A 1 203 ASN 203 590 590 ASN ASN A . n A 1 204 ILE 204 591 591 ILE ILE A . n A 1 205 THR 205 592 592 THR THR A . n A 1 206 GLY 206 593 593 GLY GLY A . n A 1 207 HIS 207 594 594 HIS HIS A . n A 1 208 GLY 208 595 595 GLY GLY A . n A 1 209 TYR 209 596 596 TYR TYR A . n A 1 210 PRO 210 597 597 PRO PRO A . n A 1 211 ASP 211 598 598 ASP ASP A . n A 1 212 PRO 212 599 599 PRO PRO A . n A 1 213 ASN 213 600 600 ASN ASN A . n A 1 214 TYR 214 601 601 TYR TYR A . n A 1 215 LEU 215 602 602 LEU LEU A . n A 1 216 GLN 216 603 603 GLN GLN A . n A 1 217 ASN 217 604 604 ASN ASN A . n A 1 218 VAL 218 605 605 VAL VAL A . n A 1 219 LEU 219 606 606 LEU LEU A . n A 1 220 ALA 220 607 607 ALA ALA A . n A 1 221 GLU 221 608 608 GLU GLU A . n A 1 222 LEU 222 609 609 LEU LEU A . n A 1 223 ALA 223 610 610 ALA ALA A . n A 1 224 ALA 224 611 611 ALA ALA A . n A 1 225 GLN 225 612 612 GLN GLN A . n A 1 226 GLY 226 613 613 GLY GLY A . n A 1 227 VAL 227 614 614 VAL VAL A . n A 1 228 THR 228 615 615 THR THR A . n A 1 229 GLU 229 616 616 GLU GLU A . n A 1 230 ASP 230 617 617 ASP ASP A . n A 1 231 CYS 231 618 ? ? ? A . n A 1 232 LEU 232 619 ? ? ? A . n A 1 233 GLU 233 620 ? ? ? A . n A 1 234 GLN 234 621 ? ? ? A . n A 1 235 GLN 235 622 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 701 1 ZN ZN A . C 2 ZN 1 702 2 ZN ZN A . D 3 HOH 1 801 9 HOH HOH A . D 3 HOH 2 802 27 HOH HOH A . D 3 HOH 3 803 42 HOH HOH A . D 3 HOH 4 804 26 HOH HOH A . D 3 HOH 5 805 39 HOH HOH A . D 3 HOH 6 806 46 HOH HOH A . D 3 HOH 7 807 87 HOH HOH A . D 3 HOH 8 808 36 HOH HOH A . D 3 HOH 9 809 40 HOH HOH A . D 3 HOH 10 810 43 HOH HOH A . D 3 HOH 11 811 45 HOH HOH A . D 3 HOH 12 812 20 HOH HOH A . D 3 HOH 13 813 16 HOH HOH A . D 3 HOH 14 814 17 HOH HOH A . D 3 HOH 15 815 59 HOH HOH A . D 3 HOH 16 816 50 HOH HOH A . D 3 HOH 17 817 15 HOH HOH A . D 3 HOH 18 818 1 HOH HOH A . D 3 HOH 19 819 21 HOH HOH A . D 3 HOH 20 820 41 HOH HOH A . D 3 HOH 21 821 7 HOH HOH A . D 3 HOH 22 822 66 HOH HOH A . D 3 HOH 23 823 14 HOH HOH A . D 3 HOH 24 824 83 HOH HOH A . D 3 HOH 25 825 75 HOH HOH A . D 3 HOH 26 826 91 HOH HOH A . D 3 HOH 27 827 4 HOH HOH A . D 3 HOH 28 828 37 HOH HOH A . D 3 HOH 29 829 32 HOH HOH A . D 3 HOH 30 830 18 HOH HOH A . D 3 HOH 31 831 60 HOH HOH A . D 3 HOH 32 832 25 HOH HOH A . D 3 HOH 33 833 47 HOH HOH A . D 3 HOH 34 834 30 HOH HOH A . D 3 HOH 35 835 53 HOH HOH A . D 3 HOH 36 836 71 HOH HOH A . D 3 HOH 37 837 2 HOH HOH A . D 3 HOH 38 838 86 HOH HOH A . D 3 HOH 39 839 52 HOH HOH A . D 3 HOH 40 840 48 HOH HOH A . D 3 HOH 41 841 79 HOH HOH A . D 3 HOH 42 842 49 HOH HOH A . D 3 HOH 43 843 10 HOH HOH A . D 3 HOH 44 844 55 HOH HOH A . D 3 HOH 45 845 19 HOH HOH A . D 3 HOH 46 846 29 HOH HOH A . D 3 HOH 47 847 78 HOH HOH A . D 3 HOH 48 848 70 HOH HOH A . D 3 HOH 49 849 34 HOH HOH A . D 3 HOH 50 850 8 HOH HOH A . D 3 HOH 51 851 58 HOH HOH A . D 3 HOH 52 852 61 HOH HOH A . D 3 HOH 53 853 72 HOH HOH A . D 3 HOH 54 854 51 HOH HOH A . D 3 HOH 55 855 38 HOH HOH A . D 3 HOH 56 856 54 HOH HOH A . D 3 HOH 57 857 31 HOH HOH A . D 3 HOH 58 858 73 HOH HOH A . D 3 HOH 59 859 6 HOH HOH A . D 3 HOH 60 860 69 HOH HOH A . D 3 HOH 61 861 76 HOH HOH A . D 3 HOH 62 862 80 HOH HOH A . D 3 HOH 63 863 13 HOH HOH A . D 3 HOH 64 864 56 HOH HOH A . D 3 HOH 65 865 12 HOH HOH A . D 3 HOH 66 866 57 HOH HOH A . D 3 HOH 67 867 77 HOH HOH A . D 3 HOH 68 868 84 HOH HOH A . D 3 HOH 69 869 82 HOH HOH A . D 3 HOH 70 870 5 HOH HOH A . D 3 HOH 71 871 23 HOH HOH A . D 3 HOH 72 872 28 HOH HOH A . D 3 HOH 73 873 88 HOH HOH A . D 3 HOH 74 874 22 HOH HOH A . D 3 HOH 75 875 81 HOH HOH A . D 3 HOH 76 876 90 HOH HOH A . D 3 HOH 77 877 3 HOH HOH A . D 3 HOH 78 878 24 HOH HOH A . D 3 HOH 79 879 85 HOH HOH A . D 3 HOH 80 880 11 HOH HOH A . D 3 HOH 81 881 68 HOH HOH A . D 3 HOH 82 882 89 HOH HOH A . D 3 HOH 83 883 92 HOH HOH A . D 3 HOH 84 884 64 HOH HOH A . D 3 HOH 85 885 44 HOH HOH A . D 3 HOH 86 886 63 HOH HOH A . D 3 HOH 87 887 62 HOH HOH A . D 3 HOH 88 888 67 HOH HOH A . D 3 HOH 89 889 74 HOH HOH A . D 3 HOH 90 890 33 HOH HOH A . D 3 HOH 91 891 35 HOH HOH A . D 3 HOH 92 892 65 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 12180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 25 ? A CYS 412 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 SG ? A CYS 28 ? A CYS 415 ? 1_555 113.4 ? 2 SG ? A CYS 25 ? A CYS 412 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 ND1 ? A HIS 63 ? A HIS 450 ? 1_555 103.1 ? 3 SG ? A CYS 28 ? A CYS 415 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 ND1 ? A HIS 63 ? A HIS 450 ? 1_555 102.0 ? 4 SG ? A CYS 25 ? A CYS 412 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 SG ? A CYS 66 ? A CYS 453 ? 1_555 118.1 ? 5 SG ? A CYS 28 ? A CYS 415 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 SG ? A CYS 66 ? A CYS 453 ? 1_555 99.1 ? 6 ND1 ? A HIS 63 ? A HIS 450 ? 1_555 ZN ? C ZN . ? A ZN 702 ? 1_555 SG ? A CYS 66 ? A CYS 453 ? 1_555 120.3 ? 7 SG ? A CYS 58 ? A CYS 445 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 ND1 ? A HIS 60 ? A HIS 447 ? 1_555 104.8 ? 8 SG ? A CYS 58 ? A CYS 445 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 SG ? A CYS 82 ? A CYS 469 ? 1_555 118.9 ? 9 ND1 ? A HIS 60 ? A HIS 447 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 SG ? A CYS 82 ? A CYS 469 ? 1_555 111.6 ? 10 SG ? A CYS 58 ? A CYS 445 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 SG ? A CYS 85 ? A CYS 472 ? 1_555 101.4 ? 11 ND1 ? A HIS 60 ? A HIS 447 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 SG ? A CYS 85 ? A CYS 472 ? 1_555 109.1 ? 12 SG ? A CYS 82 ? A CYS 469 ? 1_555 ZN ? B ZN . ? A ZN 701 ? 1_555 SG ? A CYS 85 ? A CYS 472 ? 1_555 110.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-02 2 'Structure model' 1 1 2020-09-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 25.4505 44.3868 12.9384 0.4842 ? 0.2177 ? 0.0096 ? 0.7468 ? 0.0134 ? 0.4125 ? 2.1941 ? 0.1090 ? 0.4747 ? 2.6328 ? -1.1658 ? 3.0459 ? 0.2204 ? 0.1471 ? 0.0594 ? -0.2275 ? -0.0555 ? 0.1292 ? -0.0375 ? 0.0839 ? -0.1366 ? 2 'X-RAY DIFFRACTION' ? refined 44.4069 34.9534 36.1854 0.3147 ? 0.0748 ? -0.0119 ? 0.3088 ? 0.0188 ? 0.3184 ? 1.9215 ? -0.1724 ? -0.5968 ? 1.3438 ? 0.5514 ? 4.6913 ? 0.1231 ? -0.1090 ? 0.1762 ? 0.0152 ? 0.0238 ? 0.0209 ? -0.5396 ? -0.4802 ? -0.1318 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 391 ? ? A 480 ? ;chain 'A' and (resid 391 through 480 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 481 ? ? A 616 ? ;chain 'A' and (resid 481 through 616 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2142 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 # _pdbx_entry_details.entry_id 6Y22 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 463 ? ? -103.05 76.72 2 1 ASP A 541 ? ? -91.97 56.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 392 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 392 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 392 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 392 ? OE2 ? A GLU 5 OE2 5 1 Y 1 A GLU 402 ? CG ? A GLU 15 CG 6 1 Y 1 A GLU 402 ? CD ? A GLU 15 CD 7 1 Y 1 A GLU 402 ? OE1 ? A GLU 15 OE1 8 1 Y 1 A GLU 402 ? OE2 ? A GLU 15 OE2 9 1 Y 1 A LYS 405 ? CG ? A LYS 18 CG 10 1 Y 1 A LYS 405 ? CD ? A LYS 18 CD 11 1 Y 1 A LYS 405 ? CE ? A LYS 18 CE 12 1 Y 1 A LYS 405 ? NZ ? A LYS 18 NZ 13 1 Y 1 A ASP 427 ? CG ? A ASP 40 CG 14 1 Y 1 A ASP 427 ? OD1 ? A ASP 40 OD1 15 1 Y 1 A ASP 427 ? OD2 ? A ASP 40 OD2 16 1 Y 1 A GLU 501 ? CG ? A GLU 114 CG 17 1 Y 1 A GLU 501 ? CD ? A GLU 114 CD 18 1 Y 1 A GLU 501 ? OE1 ? A GLU 114 OE1 19 1 Y 1 A GLU 501 ? OE2 ? A GLU 114 OE2 20 1 Y 1 A LYS 557 ? CG ? A LYS 170 CG 21 1 Y 1 A LYS 557 ? CD ? A LYS 170 CD 22 1 Y 1 A LYS 557 ? CE ? A LYS 170 CE 23 1 Y 1 A LYS 557 ? NZ ? A LYS 170 NZ 24 1 Y 1 A GLU 616 ? CG ? A GLU 229 CG 25 1 Y 1 A GLU 616 ? CD ? A GLU 229 CD 26 1 Y 1 A GLU 616 ? OE1 ? A GLU 229 OE1 27 1 Y 1 A GLU 616 ? OE2 ? A GLU 229 OE2 28 1 Y 1 A ASP 617 ? CG ? A ASP 230 CG 29 1 Y 1 A ASP 617 ? OD1 ? A ASP 230 OD1 30 1 Y 1 A ASP 617 ? OD2 ? A ASP 230 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 388 ? A GLY 1 2 1 Y 1 A SER 389 ? A SER 2 3 1 Y 1 A GLU 390 ? A GLU 3 4 1 Y 1 A CYS 618 ? A CYS 231 5 1 Y 1 A LEU 619 ? A LEU 232 6 1 Y 1 A GLU 620 ? A GLU 233 7 1 Y 1 A GLN 621 ? A GLN 234 8 1 Y 1 A GLN 622 ? A GLN 235 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Cancer Research UK' 'United Kingdom' A23278 1 'European Research Council (ERC)' 'United Kingdom' 647849 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 32 2 1' _space_group.name_Hall ;P 32 2" ; _space_group.IT_number 154 _space_group.crystal_system trigonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 x-y,-y,-z+1/3 5 -x,-x+y,-z+2/3 6 y,x,-z #