HEADER TOXIN 17-FEB-20 6Y2Q TITLE ESCHERICHIA COLI RNLA ENDORIBONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA ENDORIBONUCLEASE TOXIN LS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE LS,TOXIN LS; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RNLA, STD, YFJN, B2630, JW2611; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ENDORIBONUCLEASE, HEPN PROTEIN, T4 PHAGE DENFENSE, TOXIN-ANTITOXIN KEYWDS 2 SYSTEM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.GARCIA-RODRIGUEZ,R.LORIS REVDAT 3 24-JAN-24 6Y2Q 1 REMARK REVDAT 2 21-JUL-21 6Y2Q 1 JRNL REVDAT 1 12-MAY-21 6Y2Q 0 JRNL AUTH G.GARCIA-RODRIGUEZ,D.CHARLIER,D.WILMAERTS,J.MICHIELS,R.LORIS JRNL TITL ALTERNATIVE DIMERIZATION IS REQUIRED FOR ACTIVITY AND JRNL TITL 2 INHIBITION OF THE HEPN RIBONUCLEASE RNLA. JRNL REF NUCLEIC ACIDS RES. V. 49 7164 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34139012 JRNL DOI 10.1093/NAR/GKAB513 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GARCIA-RODRIGUEZ,A.TALAVERA PEREZ,A.KONIJNENBERG,F.SOBOTT, REMARK 1 AUTH 2 J.MICHIELS,R.LORIS REMARK 1 TITL THE ESCHERICHIA COLI RNLA-RNLB TOXIN-ANTITOXIN COMPLEX: REMARK 1 TITL 2 PRODUCTION, CHARACTERIZATION AND CRYSTALLIZATION. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 76 31 2020 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 DOI 10.1107/S2053230X19017175 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 20809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 7.1900 1.00 2647 139 0.1754 0.2144 REMARK 3 2 7.1900 - 5.7100 1.00 2680 133 0.2060 0.2822 REMARK 3 3 5.7100 - 4.9900 1.00 2653 141 0.1598 0.1962 REMARK 3 4 4.9900 - 4.5300 1.00 2672 141 0.1423 0.1887 REMARK 3 5 4.5300 - 4.2100 1.00 2698 140 0.1456 0.1824 REMARK 3 6 4.2100 - 3.9600 1.00 2646 136 0.1806 0.2448 REMARK 3 7 3.9600 - 3.7600 1.00 2665 143 0.2019 0.2598 REMARK 3 8 3.7600 - 3.6000 1.00 2653 138 0.2141 0.2671 REMARK 3 9 3.6000 - 3.4600 1.00 2684 139 0.2630 0.3586 REMARK 3 10 3.4600 - 3.3400 1.00 2637 142 0.2829 0.3322 REMARK 3 11 3.3400 - 3.2400 1.00 2671 136 0.2874 0.3356 REMARK 3 12 3.2400 - 3.1400 1.00 2678 136 0.3004 0.3411 REMARK 3 13 3.1400 - 3.0600 1.00 2647 136 0.3308 0.3849 REMARK 3 14 3.0600 - 2.9900 0.85 2284 123 0.3404 0.3685 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.886 2.420 71.797 REMARK 3 T TENSOR REMARK 3 T11: 0.6643 T22: 0.5834 REMARK 3 T33: 0.4601 T12: 0.0420 REMARK 3 T13: -0.0400 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.3377 L22: 0.2876 REMARK 3 L33: 0.7499 L12: 0.3595 REMARK 3 L13: 0.1075 L23: 0.5063 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.2225 S13: -0.0622 REMARK 3 S21: 0.1622 S22: -0.0949 S23: -0.0240 REMARK 3 S31: 0.3012 S32: -0.0510 S33: 0.0585 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.031 -23.297 36.557 REMARK 3 T TENSOR REMARK 3 T11: 0.6395 T22: 0.5777 REMARK 3 T33: 0.6301 T12: 0.0060 REMARK 3 T13: -0.0011 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 1.8531 L22: 0.4186 REMARK 3 L33: 0.3045 L12: 0.2080 REMARK 3 L13: -0.1170 L23: 0.3434 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: 0.1639 S13: -0.1155 REMARK 3 S21: 0.1327 S22: 0.0899 S23: 0.0317 REMARK 3 S31: 0.1975 S32: -0.0506 S33: -0.0295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 40 OR REMARK 3 (RESID 41 THROUGH 42 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 43 THROUGH 77 OR (RESID 78 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 79 THROUGH 108 OR REMARK 3 (RESID 109 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 110 THROUGH 125 OR (RESID 126 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 127 OR (RESID 128 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME NE ) REMARK 3 ) OR RESID 129 THROUGH 145 OR (RESID 146 REMARK 3 THROUGH 147 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 148 THROUGH 192 OR (RESID 194 THROUGH 195 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 196 THROUGH 207 REMARK 3 OR (RESID 208 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME NE )) OR RESID 209 REMARK 3 THROUGH 227 OR (RESID 228 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 229 THROUGH 261 OR (RESID 262 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 263 OR RESID 265 REMARK 3 OR RESID 267 OR (RESID 270 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 271 THROUGH 280 OR (RESID 281 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 282 THROUGH 289 REMARK 3 OR (RESID 290 THROUGH 292 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 293 THROUGH 297 OR (RESID 298 REMARK 3 THROUGH 300 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 301 THROUGH 304 OR (RESID 305 THROUGH 306 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 307 THROUGH 323 REMARK 3 OR (RESID 324 THROUGH 325 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 338 THROUGH 342 OR (RESID 343 REMARK 3 THROUGH 344 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 345 OR RESID 347 THROUGH 352 OR (RESID REMARK 3 353 THROUGH 354 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 355 THROUGH 356)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 3 AND (NAME CA OR REMARK 3 NAME C OR NAME O )) OR RESID 4 THROUGH REMARK 3 108 OR (RESID 109 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 )) OR RESID 110 THROUGH 125 OR (RESID 126 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 127 OR (RESID REMARK 3 128 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB OR NAME CG OR NAME CD REMARK 3 OR NAME NE )) OR RESID 129 THROUGH 145 OR REMARK 3 (RESID 146 THROUGH 147 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 148 THROUGH 192 OR (RESID 194 REMARK 3 THROUGH 195 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 196 THROUGH 207 OR (RESID 208 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD OR NAME NE )) OR REMARK 3 RESID 209 THROUGH 227 OR (RESID 228 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 229 THROUGH 261 OR REMARK 3 (RESID 262 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 263 OR REMARK 3 RESID 265 OR RESID 269 OR (RESID 270 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 271 THROUGH 280 OR REMARK 3 (RESID 281 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 282 REMARK 3 THROUGH 289 OR (RESID 290 THROUGH 292 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 293 THROUGH 294 OR REMARK 3 (RESID 295 THROUGH 300 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 301 THROUGH 302 OR (RESID 303 REMARK 3 THROUGH 306 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 307 THROUGH 323 OR (RESID 324 THROUGH 325 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 338 THROUGH 342 REMARK 3 OR (RESID 343 THROUGH 344 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 345 OR RESID 347 THROUGH 352 OR REMARK 3 (RESID 353 THROUGH 354 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 355 THROUGH 356)) REMARK 3 ATOM PAIRS NUMBER : 1988 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972422 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.986 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4I8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 20 MM TRIS HCL PH 8, REMARK 280 150 MM NACL, 1 MM TRIS(2-CARBOXYETHYL) PHOSPHINE. RESERVOIR REMARK 280 SOLUTION: 0.1 M MES MONOHYDRATE PH 6.5, 12% PEG 20 000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 327 REMARK 465 VAL A 328 REMARK 465 ASP A 329 REMARK 465 ALA A 330 REMARK 465 SER A 331 REMARK 465 ARG A 332 REMARK 465 MET A 333 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 327 REMARK 465 VAL B 328 REMARK 465 ASP B 329 REMARK 465 ALA B 330 REMARK 465 SER B 331 REMARK 465 ARG B 332 REMARK 465 MET B 333 REMARK 465 ILE B 334 REMARK 465 SER B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 3 N CB CG1 CG2 CD1 REMARK 470 ARG A 41 CZ NH1 NH2 REMARK 470 ARG A 78 NE CZ NH1 NH2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 PHE A 295 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 299 CG CD1 CD2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 303 CG CD OE1 NE2 REMARK 470 ILE A 304 CG1 CG2 CD1 REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 VAL A 357 CG1 CG2 REMARK 470 ILE B 3 CG1 CG2 CD1 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 ILE B 306 CG1 CG2 CD1 REMARK 470 THR B 326 OG1 CG2 REMARK 470 ARG B 339 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 85.30 -151.49 REMARK 500 ASN A 101 83.51 -153.65 REMARK 500 ASN A 133 -147.80 -124.15 REMARK 500 LEU A 168 -142.25 -109.53 REMARK 500 ALA A 216 -117.31 39.84 REMARK 500 PRO A 241 -166.75 -77.22 REMARK 500 LEU A 249 -9.87 -58.77 REMARK 500 TYR A 281 -52.10 -132.53 REMARK 500 ASP A 283 -163.73 -105.77 REMARK 500 ALA A 286 -107.89 49.83 REMARK 500 SER B 67 158.91 -47.13 REMARK 500 ASN B 77 82.97 -152.67 REMARK 500 ALA B 95 -3.69 -59.81 REMARK 500 ASN B 101 85.61 -153.31 REMARK 500 ASN B 133 -147.95 -127.48 REMARK 500 LEU B 168 -149.13 -108.19 REMARK 500 ALA B 216 -112.35 38.19 REMARK 500 PRO B 241 -167.11 -78.70 REMARK 500 ALA B 286 -135.63 62.51 REMARK 500 GLU B 325 78.43 58.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 DBREF 6Y2Q A 1 357 UNP P52129 RNLA_ECOLI 1 357 DBREF 6Y2Q B 1 357 UNP P52129 RNLA_ECOLI 1 357 SEQRES 1 A 357 MET THR ILE ARG SER TYR LYS ASN LEU ASN LEU VAL ARG SEQRES 2 A 357 ALA ASN ILE GLU THR GLU SER ARG GLN PHE ILE GLU ASN SEQRES 3 A 357 LYS ASN TYR SER ILE GLN SER ILE GLY PRO MET PRO GLY SEQRES 4 A 357 SER ARG ALA GLY LEU ARG VAL VAL PHE THR ARG PRO GLY SEQRES 5 A 357 VAL ASN LEU ALA THR VAL ASP ILE PHE TYR ASN GLY ASP SEQRES 6 A 357 GLY SER THR THR ILE GLN TYR LEU THR GLY ALA ASN ARG SEQRES 7 A 357 SER LEU GLY GLN GLU LEU ALA ASP HIS LEU PHE GLU THR SEQRES 8 A 357 ILE ASN PRO ALA GLU PHE GLU GLN VAL ASN MET VAL LEU SEQRES 9 A 357 GLN GLY PHE VAL GLU THR SER VAL LEU PRO VAL LEU GLU SEQRES 10 A 357 LEU SER ALA ASP GLU SER HIS ILE GLU PHE ARG GLU HIS SEQRES 11 A 357 SER ARG ASN ALA HIS THR VAL VAL TRP LYS ILE ILE SER SEQRES 12 A 357 THR SER TYR GLN ASP GLU LEU THR VAL SER LEU HIS ILE SEQRES 13 A 357 THR THR GLY LYS LEU GLN ILE GLN GLY ARG PRO LEU SER SEQRES 14 A 357 CYS TYR ARG VAL PHE THR PHE ASN LEU ALA ALA LEU LEU SEQRES 15 A 357 ASP LEU GLN GLY LEU GLU LYS VAL LEU ILE ARG GLN GLU SEQRES 16 A 357 ASP GLY LYS ALA ASN ILE VAL GLN GLN GLU VAL ALA ARG SEQRES 17 A 357 THR TYR LEU GLN THR VAL MET ALA ASP ALA TYR PRO HIS SEQRES 18 A 357 LEU HIS VAL THR ALA GLU LYS LEU LEU VAL SER GLY LEU SEQRES 19 A 357 CYS VAL LYS LEU ALA ALA PRO ASP LEU PRO ASP TYR CYS SEQRES 20 A 357 MET LEU LEU TYR PRO GLU LEU ARG THR ILE GLU GLY VAL SEQRES 21 A 357 LEU LYS SER LYS MET SER GLY LEU GLY MET PRO VAL GLN SEQRES 22 A 357 GLN PRO ALA GLY PHE GLY THR TYR PHE ASP LYS PRO ALA SEQRES 23 A 357 ALA HIS TYR ILE LEU LYS PRO GLN PHE ALA ALA THR LEU SEQRES 24 A 357 ARG PRO GLU GLN ILE ASN ILE ILE SER THR ALA TYR THR SEQRES 25 A 357 PHE PHE ASN VAL GLU ARG HIS SER LEU PHE HIS MET GLU SEQRES 26 A 357 THR VAL VAL ASP ALA SER ARG MET ILE SER ASP MET ALA SEQRES 27 A 357 ARG LEU MET GLY LYS ALA THR ARG ALA TRP GLY ILE ILE SEQRES 28 A 357 LYS ASP LEU TYR ILE VAL SEQRES 1 B 357 MET THR ILE ARG SER TYR LYS ASN LEU ASN LEU VAL ARG SEQRES 2 B 357 ALA ASN ILE GLU THR GLU SER ARG GLN PHE ILE GLU ASN SEQRES 3 B 357 LYS ASN TYR SER ILE GLN SER ILE GLY PRO MET PRO GLY SEQRES 4 B 357 SER ARG ALA GLY LEU ARG VAL VAL PHE THR ARG PRO GLY SEQRES 5 B 357 VAL ASN LEU ALA THR VAL ASP ILE PHE TYR ASN GLY ASP SEQRES 6 B 357 GLY SER THR THR ILE GLN TYR LEU THR GLY ALA ASN ARG SEQRES 7 B 357 SER LEU GLY GLN GLU LEU ALA ASP HIS LEU PHE GLU THR SEQRES 8 B 357 ILE ASN PRO ALA GLU PHE GLU GLN VAL ASN MET VAL LEU SEQRES 9 B 357 GLN GLY PHE VAL GLU THR SER VAL LEU PRO VAL LEU GLU SEQRES 10 B 357 LEU SER ALA ASP GLU SER HIS ILE GLU PHE ARG GLU HIS SEQRES 11 B 357 SER ARG ASN ALA HIS THR VAL VAL TRP LYS ILE ILE SER SEQRES 12 B 357 THR SER TYR GLN ASP GLU LEU THR VAL SER LEU HIS ILE SEQRES 13 B 357 THR THR GLY LYS LEU GLN ILE GLN GLY ARG PRO LEU SER SEQRES 14 B 357 CYS TYR ARG VAL PHE THR PHE ASN LEU ALA ALA LEU LEU SEQRES 15 B 357 ASP LEU GLN GLY LEU GLU LYS VAL LEU ILE ARG GLN GLU SEQRES 16 B 357 ASP GLY LYS ALA ASN ILE VAL GLN GLN GLU VAL ALA ARG SEQRES 17 B 357 THR TYR LEU GLN THR VAL MET ALA ASP ALA TYR PRO HIS SEQRES 18 B 357 LEU HIS VAL THR ALA GLU LYS LEU LEU VAL SER GLY LEU SEQRES 19 B 357 CYS VAL LYS LEU ALA ALA PRO ASP LEU PRO ASP TYR CYS SEQRES 20 B 357 MET LEU LEU TYR PRO GLU LEU ARG THR ILE GLU GLY VAL SEQRES 21 B 357 LEU LYS SER LYS MET SER GLY LEU GLY MET PRO VAL GLN SEQRES 22 B 357 GLN PRO ALA GLY PHE GLY THR TYR PHE ASP LYS PRO ALA SEQRES 23 B 357 ALA HIS TYR ILE LEU LYS PRO GLN PHE ALA ALA THR LEU SEQRES 24 B 357 ARG PRO GLU GLN ILE ASN ILE ILE SER THR ALA TYR THR SEQRES 25 B 357 PHE PHE ASN VAL GLU ARG HIS SER LEU PHE HIS MET GLU SEQRES 26 B 357 THR VAL VAL ASP ALA SER ARG MET ILE SER ASP MET ALA SEQRES 27 B 357 ARG LEU MET GLY LYS ALA THR ARG ALA TRP GLY ILE ILE SEQRES 28 B 357 LYS ASP LEU TYR ILE VAL HET CL A 401 1 HET CL B 401 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 VAL A 12 ALA A 14 5 3 HELIX 2 AA2 ASN A 15 LYS A 27 1 13 HELIX 3 AA3 ASN A 77 GLU A 90 1 14 HELIX 4 AA4 THR A 91 ILE A 92 5 2 HELIX 5 AA5 ASN A 93 GLU A 98 5 6 HELIX 6 AA6 VAL A 108 ALA A 120 1 13 HELIX 7 AA7 LEU A 168 ALA A 179 1 12 HELIX 8 AA8 ALA A 180 LEU A 182 5 3 HELIX 9 AA9 ASP A 183 ARG A 193 1 11 HELIX 10 AB1 LYS A 198 VAL A 202 5 5 HELIX 11 AB2 GLN A 203 MET A 215 1 13 HELIX 12 AB3 ALA A 216 TYR A 219 5 4 HELIX 13 AB4 HIS A 223 ALA A 239 1 17 HELIX 14 AB5 TYR A 246 LEU A 249 5 4 HELIX 15 AB6 LEU A 250 MET A 265 1 16 HELIX 16 AB7 LYS A 292 ALA A 297 1 6 HELIX 17 AB8 ARG A 300 HIS A 323 1 24 HELIX 18 AB9 MET A 337 VAL A 357 1 21 HELIX 19 AC1 VAL B 12 ALA B 14 5 3 HELIX 20 AC2 ASN B 15 LYS B 27 1 13 HELIX 21 AC3 ASN B 77 GLU B 90 1 14 HELIX 22 AC4 THR B 91 ILE B 92 5 2 HELIX 23 AC5 ASN B 93 PHE B 97 5 5 HELIX 24 AC6 VAL B 108 ALA B 120 1 13 HELIX 25 AC7 LEU B 168 ALA B 179 1 12 HELIX 26 AC8 ALA B 180 LEU B 182 5 3 HELIX 27 AC9 ASP B 183 ARG B 193 1 11 HELIX 28 AD1 LYS B 198 VAL B 202 5 5 HELIX 29 AD2 GLN B 203 ALA B 216 1 14 HELIX 30 AD3 ASP B 217 TYR B 219 5 3 HELIX 31 AD4 HIS B 223 ALA B 239 1 17 HELIX 32 AD5 TYR B 246 LEU B 249 5 4 HELIX 33 AD6 LEU B 250 GLY B 267 1 18 HELIX 34 AD7 PHE B 278 THR B 280 5 3 HELIX 35 AD8 LYS B 292 ALA B 297 1 6 HELIX 36 AD9 ARG B 300 HIS B 323 1 24 HELIX 37 AE1 MET B 337 VAL B 357 1 21 SHEET 1 AA1 4 SER A 30 PRO A 36 0 SHEET 2 AA1 4 GLY A 43 THR A 49 -1 O THR A 49 N SER A 30 SHEET 3 AA1 4 ALA A 56 TYR A 62 -1 O ALA A 56 N PHE A 48 SHEET 4 AA1 4 THR A 68 GLN A 71 -1 O GLN A 71 N ASP A 59 SHEET 1 AA2 5 VAL A 100 GLN A 105 0 SHEET 2 AA2 5 LYS A 160 GLY A 165 -1 O LEU A 161 N LEU A 104 SHEET 3 AA2 5 GLU A 149 HIS A 155 -1 N HIS A 155 O LYS A 160 SHEET 4 AA2 5 THR A 136 SER A 143 -1 N VAL A 137 O LEU A 154 SHEET 5 AA2 5 ILE A 125 ARG A 132 -1 N ARG A 128 O LYS A 140 SHEET 1 AA3 4 SER B 30 PRO B 36 0 SHEET 2 AA3 4 GLY B 43 THR B 49 -1 O THR B 49 N SER B 30 SHEET 3 AA3 4 ALA B 56 TYR B 62 -1 O ALA B 56 N PHE B 48 SHEET 4 AA3 4 THR B 68 GLN B 71 -1 O GLN B 71 N ASP B 59 SHEET 1 AA4 5 VAL B 100 LEU B 104 0 SHEET 2 AA4 5 LYS B 160 GLY B 165 -1 O GLY B 165 N VAL B 100 SHEET 3 AA4 5 ASP B 148 HIS B 155 -1 N HIS B 155 O LYS B 160 SHEET 4 AA4 5 THR B 136 SER B 143 -1 N VAL B 137 O LEU B 154 SHEET 5 AA4 5 ILE B 125 ARG B 132 -1 N SER B 131 O VAL B 138 SHEET 1 AA5 2 PHE B 282 ASP B 283 0 SHEET 2 AA5 2 ILE B 290 LEU B 291 -1 O ILE B 290 N ASP B 283 SITE 1 AC1 1 LYS A 189 SITE 1 AC2 1 LYS B 189 CRYST1 64.320 100.800 154.090 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006490 0.00000