HEADER TOXIN 17-FEB-20 6Y2R TITLE ESCHERICHIA COLI R255A RNLA ENDORIBONUCLEASE (SINGLE ALANINE MUTANT OF TITLE 2 RNLA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA ENDORIBONUCLEASE TOXIN LS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE LS,TOXIN LS; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RNLA, STD, YFJN, B2630, JW2611; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ENDORIBONUCLEASE CATALYTIC MUTANT, HEPN PROTEIN, T4 PHAGE DENFENSE, KEYWDS 2 TOXIN-ANTITOXIN SYSTEM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.GARCIA-RODRIGUEZ,R.LORIS REVDAT 3 24-JAN-24 6Y2R 1 REMARK REVDAT 2 21-JUL-21 6Y2R 1 JRNL REVDAT 1 12-MAY-21 6Y2R 0 JRNL AUTH G.GARCIA-RODRIGUEZ,D.CHARLIER,D.WILMAERTS,J.MICHIELS,R.LORIS JRNL TITL ALTERNATIVE DIMERIZATION IS REQUIRED FOR ACTIVITY AND JRNL TITL 2 INHIBITION OF THE HEPN RIBONUCLEASE RNLA. JRNL REF NUCLEIC ACIDS RES. V. 49 7164 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34139012 JRNL DOI 10.1093/NAR/GKAB513 REMARK 2 REMARK 2 RESOLUTION. 3.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1800 - 7.0700 1.00 2895 148 0.1390 0.2277 REMARK 3 2 7.0700 - 5.6200 1.00 2904 147 0.2369 0.3438 REMARK 3 3 5.6100 - 4.9000 1.00 2862 149 0.2217 0.3142 REMARK 3 4 4.9000 - 4.4600 1.00 2903 155 0.2360 0.3059 REMARK 3 5 4.4600 - 4.1400 1.00 2914 150 0.2700 0.3768 REMARK 3 6 4.1400 - 3.8900 0.98 2860 155 0.3262 0.3687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.686 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.907 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 124.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 137.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5505 REMARK 3 ANGLE : 0.693 7478 REMARK 3 CHIRALITY : 0.046 866 REMARK 3 PLANARITY : 0.004 961 REMARK 3 DIHEDRAL : 15.646 2014 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4675 -66.9492 -66.1618 REMARK 3 T TENSOR REMARK 3 T11: 0.9948 T22: 1.0275 REMARK 3 T33: 1.1429 T12: 0.1685 REMARK 3 T13: 0.0185 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 4.8304 L22: 0.2425 REMARK 3 L33: 0.3164 L12: -0.4002 REMARK 3 L13: 0.7182 L23: 0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: 0.5969 S13: 0.5703 REMARK 3 S21: 0.1460 S22: 0.0370 S23: 0.1097 REMARK 3 S31: -0.0209 S32: -0.5084 S33: -0.0252 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1361 -64.0188 -69.3936 REMARK 3 T TENSOR REMARK 3 T11: 0.7959 T22: 0.8348 REMARK 3 T33: 1.0604 T12: 0.0078 REMARK 3 T13: -0.0782 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.8515 L22: 6.8709 REMARK 3 L33: 5.4068 L12: -1.8058 REMARK 3 L13: 0.9038 L23: 4.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.4182 S13: -0.5906 REMARK 3 S21: 0.1676 S22: 0.4380 S23: -0.2183 REMARK 3 S31: 0.2869 S32: 1.3227 S33: -0.4992 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7348 -42.3865 -75.5385 REMARK 3 T TENSOR REMARK 3 T11: 1.2168 T22: 1.2190 REMARK 3 T33: 1.2594 T12: 0.0011 REMARK 3 T13: -0.0722 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 1.7431 L22: 4.3240 REMARK 3 L33: 8.8963 L12: 0.9724 REMARK 3 L13: -0.5545 L23: -3.2754 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.6998 S13: 0.1169 REMARK 3 S21: -0.5232 S22: -0.1766 S23: -0.1108 REMARK 3 S31: -0.4684 S32: 0.4571 S33: 0.2047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4650 -36.6739 -25.4375 REMARK 3 T TENSOR REMARK 3 T11: 1.2033 T22: 1.1572 REMARK 3 T33: 1.3838 T12: 0.0657 REMARK 3 T13: -0.0260 T23: -0.0784 REMARK 3 L TENSOR REMARK 3 L11: 8.0579 L22: 3.1249 REMARK 3 L33: 5.2219 L12: 1.5243 REMARK 3 L13: 0.8197 L23: 3.8478 REMARK 3 S TENSOR REMARK 3 S11: -0.2954 S12: -0.7681 S13: -0.1260 REMARK 3 S21: -0.0300 S22: 0.4825 S23: -0.5531 REMARK 3 S31: 0.0559 S32: 0.1340 S33: -0.1846 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7401 -33.0270 -35.0788 REMARK 3 T TENSOR REMARK 3 T11: 0.9521 T22: 1.0002 REMARK 3 T33: 1.1497 T12: -0.0785 REMARK 3 T13: 0.0598 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.4453 L22: 1.0439 REMARK 3 L33: 6.1902 L12: -1.6314 REMARK 3 L13: 0.5525 L23: 0.5537 REMARK 3 S TENSOR REMARK 3 S11: -0.1703 S12: 0.2390 S13: -0.0022 REMARK 3 S21: 0.0964 S22: 0.0808 S23: 0.2143 REMARK 3 S31: 0.3993 S32: 0.3829 S33: 0.0380 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5658 -16.1674 -46.2603 REMARK 3 T TENSOR REMARK 3 T11: 1.9415 T22: 1.2792 REMARK 3 T33: 1.5472 T12: 0.0412 REMARK 3 T13: 0.0845 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 3.9079 L22: 3.8166 REMARK 3 L33: 5.1263 L12: -0.6549 REMARK 3 L13: 1.4262 L23: 0.2987 REMARK 3 S TENSOR REMARK 3 S11: -0.3124 S12: -0.0649 S13: 1.4686 REMARK 3 S21: -0.2053 S22: 0.8554 S23: 0.2743 REMARK 3 S31: -1.4196 S32: 0.9426 S33: -0.3851 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND ((RESID 3 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 4 THROUGH 27 OR RESID 29 THROUGH REMARK 3 110 OR RESID 112 THROUGH 280 OR (RESID REMARK 3 281 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 282 THROUGH REMARK 3 325 OR RESID 336 THROUGH 356)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 3 THROUGH 27 OR REMARK 3 RESID 29 THROUGH 110 OR RESID 112 THROUGH REMARK 3 283 OR (RESID 284 THROUGH 285 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD )) OR RESID 286 REMARK 3 THROUGH 356)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980114 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9959 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.890 REMARK 200 RESOLUTION RANGE LOW (A) : 45.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4I8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 20 MM TRIS HCL PH 8, REMARK 280 150 MM NACL, 1 MM TRIS(2-CARBOXYETHYL) PHOSPHINE. RESERVOIR REMARK 280 SOLUTION: 100 MM TRIS-HCL, PH 8.5, 8 % PEG 8000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.11500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.11500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 THR A 326 REMARK 465 VAL A 327 REMARK 465 VAL A 328 REMARK 465 ASP A 329 REMARK 465 ALA A 330 REMARK 465 SER A 331 REMARK 465 ARG A 332 REMARK 465 MET A 333 REMARK 465 ILE A 334 REMARK 465 VAL A 357 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 THR B 2 REMARK 465 THR B 326 REMARK 465 VAL B 327 REMARK 465 VAL B 328 REMARK 465 ASP B 329 REMARK 465 ALA B 330 REMARK 465 SER B 331 REMARK 465 ARG B 332 REMARK 465 MET B 333 REMARK 465 ILE B 334 REMARK 465 SER B 335 REMARK 465 VAL B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 GLN A 274 CG CD OE1 NE2 REMARK 470 LYS A 284 CE NZ REMARK 470 HIS A 288 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ILE B 3 CG1 CG2 CD1 REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 TYR B 281 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 288 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 65.13 64.10 REMARK 500 TYR A 29 -168.80 -78.15 REMARK 500 TYR A 146 -168.97 -77.41 REMARK 500 LEU A 168 -155.24 -107.23 REMARK 500 ASP A 183 -164.42 -75.64 REMARK 500 ASP A 196 56.36 -100.92 REMARK 500 ALA A 216 -86.25 -63.62 REMARK 500 PRO A 285 -82.00 -74.27 REMARK 500 ALA A 287 18.65 52.59 REMARK 500 ARG B 4 121.40 66.79 REMARK 500 ASN B 8 64.57 62.19 REMARK 500 TYR B 29 -163.91 -103.25 REMARK 500 VAL B 53 -160.63 -128.80 REMARK 500 TYR B 146 -166.93 -75.95 REMARK 500 LEU B 168 -155.86 -107.52 REMARK 500 ASP B 183 -164.75 -76.05 REMARK 500 ASP B 196 53.84 -101.50 REMARK 500 ALA B 216 -82.56 -63.82 REMARK 500 ALA B 286 -108.23 -123.63 REMARK 500 MET B 324 52.08 72.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Y2R A 2 357 UNP P52129 RNLA_ECOLI 2 357 DBREF 6Y2R B 2 357 UNP P52129 RNLA_ECOLI 2 357 SEQADV 6Y2R MET A -15 UNP P52129 INITIATING METHIONINE SEQADV 6Y2R GLY A -14 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -13 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -12 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -11 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -10 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -9 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS A -8 UNP P52129 EXPRESSION TAG SEQADV 6Y2R SER A -7 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLY A -6 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLU A -5 UNP P52129 EXPRESSION TAG SEQADV 6Y2R ASN A -4 UNP P52129 EXPRESSION TAG SEQADV 6Y2R LEU A -3 UNP P52129 EXPRESSION TAG SEQADV 6Y2R TYR A -2 UNP P52129 EXPRESSION TAG SEQADV 6Y2R PHE A -1 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLN A 0 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLY A 1 UNP P52129 EXPRESSION TAG SEQADV 6Y2R ALA A 255 UNP P52129 ARG 255 ENGINEERED MUTATION SEQADV 6Y2R MET B -15 UNP P52129 INITIATING METHIONINE SEQADV 6Y2R GLY B -14 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -13 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -12 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -11 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -10 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -9 UNP P52129 EXPRESSION TAG SEQADV 6Y2R HIS B -8 UNP P52129 EXPRESSION TAG SEQADV 6Y2R SER B -7 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLY B -6 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLU B -5 UNP P52129 EXPRESSION TAG SEQADV 6Y2R ASN B -4 UNP P52129 EXPRESSION TAG SEQADV 6Y2R LEU B -3 UNP P52129 EXPRESSION TAG SEQADV 6Y2R TYR B -2 UNP P52129 EXPRESSION TAG SEQADV 6Y2R PHE B -1 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLN B 0 UNP P52129 EXPRESSION TAG SEQADV 6Y2R GLY B 1 UNP P52129 EXPRESSION TAG SEQADV 6Y2R ALA B 255 UNP P52129 ARG 255 ENGINEERED MUTATION SEQRES 1 A 373 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU ASN LEU SEQRES 2 A 373 TYR PHE GLN GLY THR ILE ARG SER TYR LYS ASN LEU ASN SEQRES 3 A 373 LEU VAL ARG ALA ASN ILE GLU THR GLU SER ARG GLN PHE SEQRES 4 A 373 ILE GLU ASN LYS ASN TYR SER ILE GLN SER ILE GLY PRO SEQRES 5 A 373 MET PRO GLY SER ARG ALA GLY LEU ARG VAL VAL PHE THR SEQRES 6 A 373 ARG PRO GLY VAL ASN LEU ALA THR VAL ASP ILE PHE TYR SEQRES 7 A 373 ASN GLY ASP GLY SER THR THR ILE GLN TYR LEU THR GLY SEQRES 8 A 373 ALA ASN ARG SER LEU GLY GLN GLU LEU ALA ASP HIS LEU SEQRES 9 A 373 PHE GLU THR ILE ASN PRO ALA GLU PHE GLU GLN VAL ASN SEQRES 10 A 373 MET VAL LEU GLN GLY PHE VAL GLU THR SER VAL LEU PRO SEQRES 11 A 373 VAL LEU GLU LEU SER ALA ASP GLU SER HIS ILE GLU PHE SEQRES 12 A 373 ARG GLU HIS SER ARG ASN ALA HIS THR VAL VAL TRP LYS SEQRES 13 A 373 ILE ILE SER THR SER TYR GLN ASP GLU LEU THR VAL SER SEQRES 14 A 373 LEU HIS ILE THR THR GLY LYS LEU GLN ILE GLN GLY ARG SEQRES 15 A 373 PRO LEU SER CYS TYR ARG VAL PHE THR PHE ASN LEU ALA SEQRES 16 A 373 ALA LEU LEU ASP LEU GLN GLY LEU GLU LYS VAL LEU ILE SEQRES 17 A 373 ARG GLN GLU ASP GLY LYS ALA ASN ILE VAL GLN GLN GLU SEQRES 18 A 373 VAL ALA ARG THR TYR LEU GLN THR VAL MET ALA ASP ALA SEQRES 19 A 373 TYR PRO HIS LEU HIS VAL THR ALA GLU LYS LEU LEU VAL SEQRES 20 A 373 SER GLY LEU CYS VAL LYS LEU ALA ALA PRO ASP LEU PRO SEQRES 21 A 373 ASP TYR CYS MET LEU LEU TYR PRO GLU LEU ALA THR ILE SEQRES 22 A 373 GLU GLY VAL LEU LYS SER LYS MET SER GLY LEU GLY MET SEQRES 23 A 373 PRO VAL GLN GLN PRO ALA GLY PHE GLY THR TYR PHE ASP SEQRES 24 A 373 LYS PRO ALA ALA HIS TYR ILE LEU LYS PRO GLN PHE ALA SEQRES 25 A 373 ALA THR LEU ARG PRO GLU GLN ILE ASN ILE ILE SER THR SEQRES 26 A 373 ALA TYR THR PHE PHE ASN VAL GLU ARG HIS SER LEU PHE SEQRES 27 A 373 HIS MET GLU THR VAL VAL ASP ALA SER ARG MET ILE SER SEQRES 28 A 373 ASP MET ALA ARG LEU MET GLY LYS ALA THR ARG ALA TRP SEQRES 29 A 373 GLY ILE ILE LYS ASP LEU TYR ILE VAL SEQRES 1 B 373 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU ASN LEU SEQRES 2 B 373 TYR PHE GLN GLY THR ILE ARG SER TYR LYS ASN LEU ASN SEQRES 3 B 373 LEU VAL ARG ALA ASN ILE GLU THR GLU SER ARG GLN PHE SEQRES 4 B 373 ILE GLU ASN LYS ASN TYR SER ILE GLN SER ILE GLY PRO SEQRES 5 B 373 MET PRO GLY SER ARG ALA GLY LEU ARG VAL VAL PHE THR SEQRES 6 B 373 ARG PRO GLY VAL ASN LEU ALA THR VAL ASP ILE PHE TYR SEQRES 7 B 373 ASN GLY ASP GLY SER THR THR ILE GLN TYR LEU THR GLY SEQRES 8 B 373 ALA ASN ARG SER LEU GLY GLN GLU LEU ALA ASP HIS LEU SEQRES 9 B 373 PHE GLU THR ILE ASN PRO ALA GLU PHE GLU GLN VAL ASN SEQRES 10 B 373 MET VAL LEU GLN GLY PHE VAL GLU THR SER VAL LEU PRO SEQRES 11 B 373 VAL LEU GLU LEU SER ALA ASP GLU SER HIS ILE GLU PHE SEQRES 12 B 373 ARG GLU HIS SER ARG ASN ALA HIS THR VAL VAL TRP LYS SEQRES 13 B 373 ILE ILE SER THR SER TYR GLN ASP GLU LEU THR VAL SER SEQRES 14 B 373 LEU HIS ILE THR THR GLY LYS LEU GLN ILE GLN GLY ARG SEQRES 15 B 373 PRO LEU SER CYS TYR ARG VAL PHE THR PHE ASN LEU ALA SEQRES 16 B 373 ALA LEU LEU ASP LEU GLN GLY LEU GLU LYS VAL LEU ILE SEQRES 17 B 373 ARG GLN GLU ASP GLY LYS ALA ASN ILE VAL GLN GLN GLU SEQRES 18 B 373 VAL ALA ARG THR TYR LEU GLN THR VAL MET ALA ASP ALA SEQRES 19 B 373 TYR PRO HIS LEU HIS VAL THR ALA GLU LYS LEU LEU VAL SEQRES 20 B 373 SER GLY LEU CYS VAL LYS LEU ALA ALA PRO ASP LEU PRO SEQRES 21 B 373 ASP TYR CYS MET LEU LEU TYR PRO GLU LEU ALA THR ILE SEQRES 22 B 373 GLU GLY VAL LEU LYS SER LYS MET SER GLY LEU GLY MET SEQRES 23 B 373 PRO VAL GLN GLN PRO ALA GLY PHE GLY THR TYR PHE ASP SEQRES 24 B 373 LYS PRO ALA ALA HIS TYR ILE LEU LYS PRO GLN PHE ALA SEQRES 25 B 373 ALA THR LEU ARG PRO GLU GLN ILE ASN ILE ILE SER THR SEQRES 26 B 373 ALA TYR THR PHE PHE ASN VAL GLU ARG HIS SER LEU PHE SEQRES 27 B 373 HIS MET GLU THR VAL VAL ASP ALA SER ARG MET ILE SER SEQRES 28 B 373 ASP MET ALA ARG LEU MET GLY LYS ALA THR ARG ALA TRP SEQRES 29 B 373 GLY ILE ILE LYS ASP LEU TYR ILE VAL HELIX 1 AA1 VAL A 12 ALA A 14 5 3 HELIX 2 AA2 ASN A 15 GLU A 25 1 11 HELIX 3 AA3 ASN A 26 ASN A 28 5 3 HELIX 4 AA4 ASN A 77 THR A 91 1 15 HELIX 5 AA5 ILE A 92 GLU A 98 5 7 HELIX 6 AA6 VAL A 108 ASP A 121 1 14 HELIX 7 AA7 LEU A 168 ALA A 179 1 12 HELIX 8 AA8 ASP A 183 ARG A 193 1 11 HELIX 9 AA9 LYS A 198 VAL A 202 5 5 HELIX 10 AB1 GLN A 203 MET A 215 1 13 HELIX 11 AB2 HIS A 223 ALA A 240 1 18 HELIX 12 AB3 TYR A 246 LEU A 249 5 4 HELIX 13 AB4 LEU A 250 SER A 266 1 17 HELIX 14 AB5 GLY A 267 GLY A 269 5 3 HELIX 15 AB6 LYS A 292 ALA A 297 1 6 HELIX 16 AB7 ARG A 300 HIS A 323 1 24 HELIX 17 AB8 ASP A 336 TYR A 355 1 20 HELIX 18 AB9 VAL B 12 ALA B 14 5 3 HELIX 19 AC1 ASN B 15 GLU B 25 1 11 HELIX 20 AC2 ASN B 77 THR B 91 1 15 HELIX 21 AC3 ILE B 92 GLU B 98 5 7 HELIX 22 AC4 VAL B 108 ASP B 121 1 14 HELIX 23 AC5 LEU B 168 ALA B 179 1 12 HELIX 24 AC6 ASP B 183 ARG B 193 1 11 HELIX 25 AC7 LYS B 198 VAL B 202 5 5 HELIX 26 AC8 GLN B 203 MET B 215 1 13 HELIX 27 AC9 ALA B 218 LEU B 222 5 5 HELIX 28 AD1 HIS B 223 ALA B 240 1 18 HELIX 29 AD2 TYR B 246 LEU B 249 5 4 HELIX 30 AD3 LEU B 250 SER B 266 1 17 HELIX 31 AD4 GLY B 267 GLY B 269 5 3 HELIX 32 AD5 LYS B 292 ALA B 297 1 6 HELIX 33 AD6 ARG B 300 HIS B 323 1 24 HELIX 34 AD7 MET B 337 TYR B 355 1 19 SHEET 1 AA1 4 SER A 30 PRO A 36 0 SHEET 2 AA1 4 GLY A 43 THR A 49 -1 O THR A 49 N SER A 30 SHEET 3 AA1 4 ALA A 56 TYR A 62 -1 O VAL A 58 N VAL A 46 SHEET 4 AA1 4 THR A 68 GLN A 71 -1 O GLN A 71 N ASP A 59 SHEET 1 AA2 5 VAL A 100 GLN A 105 0 SHEET 2 AA2 5 LYS A 160 GLY A 165 -1 O LEU A 161 N LEU A 104 SHEET 3 AA2 5 GLU A 149 HIS A 155 -1 N THR A 151 O GLN A 164 SHEET 4 AA2 5 THR A 136 ILE A 142 -1 N ILE A 141 O LEU A 150 SHEET 5 AA2 5 GLU A 126 ARG A 132 -1 N SER A 131 O VAL A 138 SHEET 1 AA3 2 PHE A 282 ASP A 283 0 SHEET 2 AA3 2 ILE A 290 LEU A 291 -1 O ILE A 290 N ASP A 283 SHEET 1 AA4 4 SER B 30 PRO B 36 0 SHEET 2 AA4 4 GLY B 43 THR B 49 -1 O THR B 49 N SER B 30 SHEET 3 AA4 4 ALA B 56 PHE B 61 -1 O VAL B 58 N VAL B 46 SHEET 4 AA4 4 THR B 69 GLN B 71 -1 O GLN B 71 N ASP B 59 SHEET 1 AA5 5 VAL B 100 GLN B 105 0 SHEET 2 AA5 5 LYS B 160 GLY B 165 -1 O LEU B 161 N LEU B 104 SHEET 3 AA5 5 GLU B 149 HIS B 155 -1 N HIS B 155 O LYS B 160 SHEET 4 AA5 5 THR B 136 SER B 143 -1 N VAL B 137 O LEU B 154 SHEET 5 AA5 5 ILE B 125 ARG B 132 -1 N SER B 131 O VAL B 138 SHEET 1 AA6 2 PHE B 282 ASP B 283 0 SHEET 2 AA6 2 ILE B 290 LEU B 291 -1 O ILE B 290 N ASP B 283 CRYST1 64.230 104.930 152.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006539 0.00000