HEADER LIGASE 17-FEB-20 6Y2X TITLE RING-DTC DOMAINS OF DELTEX 2, FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE E3 UBIQUITIN-PROTEIN LIGASE DTX2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN DELTEX-2,HDTX2,RING FINGER PROTEIN 58,RING-TYPE E3 COMPND 5 UBIQUITIN TRANSFERASE DTX2; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DTX2, KIAA1528, RNF58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PABLO KEYWDS UBIQUITIN, E3 RING LIGASE, PAR-BINDING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,L.BUETOW,D.T.HUANG REVDAT 3 24-JAN-24 6Y2X 1 REMARK REVDAT 2 30-SEP-20 6Y2X 1 JRNL REVDAT 1 02-SEP-20 6Y2X 0 JRNL AUTH S.F.AHMED,L.BUETOW,M.GABRIELSEN,S.LILLA,C.CHATRIN, JRNL AUTH 2 G.J.SIBBET,S.ZANIVAN,D.T.HUANG JRNL TITL DELTEX2 C-TERMINAL DOMAIN RECOGNIZES AND RECRUITS JRNL TITL 2 ADP-RIBOSYLATED PROTEINS FOR UBIQUITINATION. JRNL REF SCI ADV V. 6 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32937373 JRNL DOI 10.1126/SCIADV.ABC0629 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2142 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 53954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4110 - 4.7218 1.00 2949 142 0.2356 0.2408 REMARK 3 2 4.7218 - 3.7480 1.00 2817 157 0.1959 0.2419 REMARK 3 3 3.7480 - 3.2743 1.00 2775 149 0.2124 0.2478 REMARK 3 4 3.2743 - 2.9749 1.00 2742 155 0.2234 0.2548 REMARK 3 5 2.9749 - 2.7617 1.00 2756 142 0.2461 0.2870 REMARK 3 6 2.7617 - 2.5988 1.00 2732 140 0.2426 0.2456 REMARK 3 7 2.5988 - 2.4687 0.99 2721 137 0.2439 0.3287 REMARK 3 8 2.4687 - 2.3612 0.99 2694 172 0.2330 0.2579 REMARK 3 9 2.3612 - 2.2703 0.99 2698 142 0.2480 0.2507 REMARK 3 10 2.2703 - 2.1920 0.99 2676 132 0.2431 0.3104 REMARK 3 11 2.1920 - 2.1234 0.99 2704 152 0.2561 0.2786 REMARK 3 12 2.1234 - 2.0627 0.99 2691 134 0.2726 0.2886 REMARK 3 13 2.0627 - 2.0084 0.99 2686 129 0.2958 0.3349 REMARK 3 14 2.0084 - 1.9594 0.98 2645 130 0.3188 0.4342 REMARK 3 15 1.9594 - 1.9149 0.98 2637 148 0.3278 0.3903 REMARK 3 16 1.9149 - 1.8741 0.97 2646 141 0.3530 0.4432 REMARK 3 17 1.8741 - 1.8366 0.96 2581 146 0.3867 0.4392 REMARK 3 18 1.8366 - 1.8020 0.95 2551 134 0.4116 0.3602 REMARK 3 19 1.8020 - 1.7700 0.93 2550 121 0.4428 0.4715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3056 REMARK 3 ANGLE : 0.841 4155 REMARK 3 CHIRALITY : 0.051 476 REMARK 3 PLANARITY : 0.005 545 REMARK 3 DIHEDRAL : 11.832 1829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6318 -30.8613 -11.4541 REMARK 3 T TENSOR REMARK 3 T11: 1.2171 T22: 0.3336 REMARK 3 T33: 0.5829 T12: 0.0098 REMARK 3 T13: -0.0830 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 1.3528 L22: 2.9150 REMARK 3 L33: 4.4617 L12: -1.7142 REMARK 3 L13: 0.5172 L23: -2.3303 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.2165 S13: 0.0741 REMARK 3 S21: -2.2213 S22: -0.2370 S23: 0.1200 REMARK 3 S31: -0.2051 S32: 0.2470 S33: 0.0774 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 578 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8132 -61.0289 -13.1564 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.2398 REMARK 3 T33: 0.1329 T12: -0.0110 REMARK 3 T13: -0.0418 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.2788 L22: 2.3651 REMARK 3 L33: 3.8159 L12: -0.1899 REMARK 3 L13: 1.2200 L23: -0.6788 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: 0.2433 S13: -0.1499 REMARK 3 S21: 0.0715 S22: 0.0197 S23: -0.1153 REMARK 3 S31: -0.4079 S32: 0.0420 S33: 0.0911 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 579 THROUGH 622 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7559 -62.2546 -11.0688 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.3879 REMARK 3 T33: 0.2800 T12: -0.0612 REMARK 3 T13: -0.0280 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.3839 L22: 4.8117 REMARK 3 L33: 3.4742 L12: 0.1802 REMARK 3 L13: 0.1089 L23: 1.8873 REMARK 3 S TENSOR REMARK 3 S11: -0.1475 S12: 0.6487 S13: -0.2430 REMARK 3 S21: -0.3189 S22: 0.2682 S23: -0.3511 REMARK 3 S31: -0.2123 S32: 0.5878 S33: -0.1490 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 391 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1500 7.1265 16.6487 REMARK 3 T TENSOR REMARK 3 T11: 1.7318 T22: -0.1403 REMARK 3 T33: 1.2668 T12: -0.0237 REMARK 3 T13: 0.7216 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.4334 L22: 3.5852 REMARK 3 L33: 0.3360 L12: 0.0830 REMARK 3 L13: 0.3520 L23: 0.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.1212 S13: -0.4150 REMARK 3 S21: 0.4748 S22: 0.0339 S23: 0.3376 REMARK 3 S31: -0.0200 S32: -0.2077 S33: -0.0102 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 482 THROUGH 616 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3884 -25.2184 12.8342 REMARK 3 T TENSOR REMARK 3 T11: 0.6117 T22: 0.3866 REMARK 3 T33: 0.4964 T12: -0.0498 REMARK 3 T13: 0.1935 T23: -0.1083 REMARK 3 L TENSOR REMARK 3 L11: 3.4102 L22: 5.5375 REMARK 3 L33: 2.5643 L12: 1.2535 REMARK 3 L13: -0.3445 L23: 0.8311 REMARK 3 S TENSOR REMARK 3 S11: 0.7254 S12: -0.4337 S13: 0.6665 REMARK 3 S21: 0.2699 S22: -0.0963 S23: 0.1720 REMARK 3 S31: -1.3623 S32: -0.0192 S33: -0.3686 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 60.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Y22 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS CONDITION 60, PH 7.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.41100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.41100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.87800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 109.79250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.87800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 109.79250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.41100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.87800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 109.79250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.41100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.87800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 109.79250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 388 REMARK 465 SER A 389 REMARK 465 GLU A 390 REMARK 465 CYS A 459 REMARK 465 GLY B 388 REMARK 465 SER B 389 REMARK 465 GLU B 390 REMARK 465 TYR B 400 REMARK 465 THR B 401 REMARK 465 GLU B 402 REMARK 465 GLU B 403 REMARK 465 LEU B 404 REMARK 465 LYS B 405 REMARK 465 VAL B 406 REMARK 465 PRO B 407 REMARK 465 PRO B 408 REMARK 465 MET B 416 REMARK 465 GLY B 424 REMARK 465 TYR B 425 REMARK 465 SER B 426 REMARK 465 ASP B 427 REMARK 465 VAL B 428 REMARK 465 GLY B 440 REMARK 465 HIS B 441 REMARK 465 ALA B 448 REMARK 465 PHE B 449 REMARK 465 GLY B 461 REMARK 465 ASN B 462 REMARK 465 ILE B 475 REMARK 465 TYR B 476 REMARK 465 GLY B 477 REMARK 465 HIS B 514 REMARK 465 GLY B 515 REMARK 465 ILE B 516 REMARK 465 GLN B 517 REMARK 465 GLY B 518 REMARK 465 PRO B 519 REMARK 465 GLU B 520 REMARK 465 HIS B 521 REMARK 465 PRO B 522 REMARK 465 ASN B 523 REMARK 465 PRO B 524 REMARK 465 GLY B 525 REMARK 465 LYS B 526 REMARK 465 PRO B 527 REMARK 465 PHE B 528 REMARK 465 THR B 529 REMARK 465 ALA B 530 REMARK 465 THR B 570 REMARK 465 GLY B 571 REMARK 465 GLU B 572 REMARK 465 THR B 573 REMARK 465 ASP B 574 REMARK 465 ASN B 590 REMARK 465 ILE B 591 REMARK 465 THR B 592 REMARK 465 ASP B 617 REMARK 465 CYS B 618 REMARK 465 LEU B 619 REMARK 465 GLU B 620 REMARK 465 GLN B 621 REMARK 465 GLN B 622 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 391 CG CD REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 GLU A 410 CG CD OE1 OE2 REMARK 470 ILE A 413 CG1 CG2 CD1 REMARK 470 MET A 416 CG SD CE REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 LEU A 419 CG CD1 CD2 REMARK 470 SER A 426 OG REMARK 470 VAL A 428 CG1 CG2 REMARK 470 SER A 431 OG REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 LEU A 437 CG CD1 CD2 REMARK 470 ASN A 460 CG OD1 ND2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 ASN A 600 CG OD1 ND2 REMARK 470 GLU B 392 CG CD OE1 OE2 REMARK 470 VAL B 396 CG1 CG2 REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 ASP B 409 CG OD1 OD2 REMARK 470 GLU B 410 CG CD OE1 OE2 REMARK 470 ASP B 411 CG OD1 OD2 REMARK 470 ILE B 413 CG1 CG2 CD1 REMARK 470 GLU B 417 CG CD OE1 OE2 REMARK 470 LYS B 418 CG CD CE NZ REMARK 470 LEU B 419 CG CD1 CD2 REMARK 470 SER B 420 OG REMARK 470 THR B 421 OG1 CG2 REMARK 470 SER B 423 OG REMARK 470 THR B 429 OG1 CG2 REMARK 470 LEU B 437 CG CD1 CD2 REMARK 470 VAL B 439 CG1 CG2 REMARK 470 LEU B 442 CG CD1 CD2 REMARK 470 THR B 443 OG1 CG2 REMARK 470 LYS B 444 CG CD CE NZ REMARK 470 TYR B 458 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 460 CG OD1 ND2 REMARK 470 LYS B 463 CG CD CE NZ REMARK 470 ASP B 464 CG OD1 OD2 REMARK 470 LEU B 467 CG CD1 CD2 REMARK 470 GLN B 468 CG CD OE1 NE2 REMARK 470 SER B 471 OG REMARK 470 LYS B 473 CG CD CE NZ REMARK 470 GLN B 485 CG CD OE1 NE2 REMARK 470 ARG B 531 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 VAL B 564 CG1 CG2 REMARK 470 THR B 566 OG1 CG2 REMARK 470 VAL B 576 CG1 CG2 REMARK 470 GLU B 580 CG CD OE1 OE2 REMARK 470 ILE B 581 CG1 CG2 CD1 REMARK 470 ARG B 589 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 594 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 603 CG CD OE1 NE2 REMARK 470 VAL B 614 CG1 CG2 REMARK 470 GLU B 616 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 877 O HOH A 965 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 416 -4.12 70.18 REMARK 500 ASP A 598 87.94 -152.80 REMARK 500 LYS B 444 -65.90 -100.34 REMARK 500 SER B 446 45.12 70.08 REMARK 500 ASP B 598 85.70 -157.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 412 SG REMARK 620 2 CYS A 415 SG 119.0 REMARK 620 3 HIS A 450 ND1 92.2 96.4 REMARK 620 4 CYS A 453 SG 118.5 113.1 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 445 SG REMARK 620 2 HIS A 447 ND1 94.7 REMARK 620 3 CYS A 469 SG 116.6 117.9 REMARK 620 4 CYS A 472 SG 107.8 108.6 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 412 SG REMARK 620 2 CYS B 415 SG 122.4 REMARK 620 3 HIS B 450 ND1 74.8 95.1 REMARK 620 4 CYS B 453 SG 143.9 93.6 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 445 SG REMARK 620 2 HIS B 447 ND1 80.6 REMARK 620 3 CYS B 469 SG 153.9 121.0 REMARK 620 4 CYS B 472 SG 90.4 101.4 98.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 62YY RELATED DB: PDB REMARK 900 62YY IS A DIFFERENT CRYSTAL FORM OF DELTEX2 DBREF 6Y2X A 390 622 UNP Q86UW9 DTX2_HUMAN 390 622 DBREF 6Y2X B 390 622 UNP Q86UW9 DTX2_HUMAN 390 622 SEQADV 6Y2X GLY A 388 UNP Q86UW9 EXPRESSION TAG SEQADV 6Y2X SER A 389 UNP Q86UW9 EXPRESSION TAG SEQADV 6Y2X GLY B 388 UNP Q86UW9 EXPRESSION TAG SEQADV 6Y2X SER B 389 UNP Q86UW9 EXPRESSION TAG SEQRES 1 A 235 GLY SER GLU PRO GLU PRO GLU GLN VAL ILE LYS ASN TYR SEQRES 2 A 235 THR GLU GLU LEU LYS VAL PRO PRO ASP GLU ASP CYS ILE SEQRES 3 A 235 ILE CYS MET GLU LYS LEU SER THR ALA SER GLY TYR SER SEQRES 4 A 235 ASP VAL THR ASP SER LYS ALA ILE GLY SER LEU ALA VAL SEQRES 5 A 235 GLY HIS LEU THR LYS CYS SER HIS ALA PHE HIS LEU LEU SEQRES 6 A 235 CYS LEU LEU ALA MET TYR CYS ASN GLY ASN LYS ASP GLY SEQRES 7 A 235 SER LEU GLN CYS PRO SER CYS LYS THR ILE TYR GLY GLU SEQRES 8 A 235 LYS THR GLY THR GLN PRO GLN GLY LYS MET GLU VAL LEU SEQRES 9 A 235 ARG PHE GLN MET SER LEU PRO GLY HIS GLU ASP CYS GLY SEQRES 10 A 235 THR ILE LEU ILE VAL TYR SER ILE PRO HIS GLY ILE GLN SEQRES 11 A 235 GLY PRO GLU HIS PRO ASN PRO GLY LYS PRO PHE THR ALA SEQRES 12 A 235 ARG GLY PHE PRO ARG GLN CYS TYR LEU PRO ASP ASN ALA SEQRES 13 A 235 GLN GLY ARG LYS VAL LEU GLU LEU LEU LYS VAL ALA TRP SEQRES 14 A 235 LYS ARG ARG LEU ILE PHE THR VAL GLY THR SER SER THR SEQRES 15 A 235 THR GLY GLU THR ASP THR VAL VAL TRP ASN GLU ILE HIS SEQRES 16 A 235 HIS LYS THR GLU MET ASP ARG ASN ILE THR GLY HIS GLY SEQRES 17 A 235 TYR PRO ASP PRO ASN TYR LEU GLN ASN VAL LEU ALA GLU SEQRES 18 A 235 LEU ALA ALA GLN GLY VAL THR GLU ASP CYS LEU GLU GLN SEQRES 19 A 235 GLN SEQRES 1 B 235 GLY SER GLU PRO GLU PRO GLU GLN VAL ILE LYS ASN TYR SEQRES 2 B 235 THR GLU GLU LEU LYS VAL PRO PRO ASP GLU ASP CYS ILE SEQRES 3 B 235 ILE CYS MET GLU LYS LEU SER THR ALA SER GLY TYR SER SEQRES 4 B 235 ASP VAL THR ASP SER LYS ALA ILE GLY SER LEU ALA VAL SEQRES 5 B 235 GLY HIS LEU THR LYS CYS SER HIS ALA PHE HIS LEU LEU SEQRES 6 B 235 CYS LEU LEU ALA MET TYR CYS ASN GLY ASN LYS ASP GLY SEQRES 7 B 235 SER LEU GLN CYS PRO SER CYS LYS THR ILE TYR GLY GLU SEQRES 8 B 235 LYS THR GLY THR GLN PRO GLN GLY LYS MET GLU VAL LEU SEQRES 9 B 235 ARG PHE GLN MET SER LEU PRO GLY HIS GLU ASP CYS GLY SEQRES 10 B 235 THR ILE LEU ILE VAL TYR SER ILE PRO HIS GLY ILE GLN SEQRES 11 B 235 GLY PRO GLU HIS PRO ASN PRO GLY LYS PRO PHE THR ALA SEQRES 12 B 235 ARG GLY PHE PRO ARG GLN CYS TYR LEU PRO ASP ASN ALA SEQRES 13 B 235 GLN GLY ARG LYS VAL LEU GLU LEU LEU LYS VAL ALA TRP SEQRES 14 B 235 LYS ARG ARG LEU ILE PHE THR VAL GLY THR SER SER THR SEQRES 15 B 235 THR GLY GLU THR ASP THR VAL VAL TRP ASN GLU ILE HIS SEQRES 16 B 235 HIS LYS THR GLU MET ASP ARG ASN ILE THR GLY HIS GLY SEQRES 17 B 235 TYR PRO ASP PRO ASN TYR LEU GLN ASN VAL LEU ALA GLU SEQRES 18 B 235 LEU ALA ALA GLN GLY VAL THR GLU ASP CYS LEU GLU GLN SEQRES 19 B 235 GLN HET ZN A 701 1 HET ZN A 702 1 HET ZN B 701 1 HET ZN B 702 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *257(H2 O) HELIX 1 AA1 GLU A 392 TYR A 400 1 9 HELIX 2 AA2 LEU A 451 TYR A 458 1 8 HELIX 3 AA3 ASN A 542 ARG A 558 1 17 HELIX 4 AA4 ASN A 600 GLN A 612 1 13 HELIX 5 AA5 THR A 615 GLU A 620 5 6 HELIX 6 AA6 GLU B 392 ASN B 399 1 8 HELIX 7 AA7 LEU B 451 ASN B 460 1 10 HELIX 8 AA8 ASN B 542 ARG B 558 1 17 HELIX 9 AA9 ASN B 600 ALA B 611 1 12 SHEET 1 AA1 3 THR A 401 GLU A 403 0 SHEET 2 AA1 3 VAL A 439 LEU A 442 -1 O HIS A 441 N GLU A 402 SHEET 3 AA1 3 ALA A 448 HIS A 450 -1 O PHE A 449 N GLY A 440 SHEET 1 AA2 2 LEU A 467 GLN A 468 0 SHEET 2 AA2 2 ILE A 475 TYR A 476 -1 O TYR A 476 N LEU A 467 SHEET 1 AA3 3 LYS A 487 PHE A 493 0 SHEET 2 AA3 3 THR A 505 SER A 511 -1 O VAL A 509 N GLU A 489 SHEET 3 AA3 3 ARG A 535 PRO A 540 -1 O LEU A 539 N ILE A 506 SHEET 1 AA4 2 GLY A 515 ILE A 516 0 SHEET 2 AA4 2 PRO A 527 PHE A 528 -1 O PHE A 528 N GLY A 515 SHEET 1 AA5 2 PHE A 562 GLY A 565 0 SHEET 2 AA5 2 THR A 575 TRP A 578 -1 O THR A 575 N GLY A 565 SHEET 1 AA6 3 LYS B 487 PHE B 493 0 SHEET 2 AA6 3 GLY B 504 SER B 511 -1 O VAL B 509 N GLU B 489 SHEET 3 AA6 3 ARG B 535 ASP B 541 -1 O LEU B 539 N ILE B 506 SHEET 1 AA7 2 PHE B 562 VAL B 564 0 SHEET 2 AA7 2 VAL B 576 TRP B 578 -1 O VAL B 577 N THR B 563 LINK SG CYS A 412 ZN ZN A 701 1555 1555 2.42 LINK SG CYS A 415 ZN ZN A 701 1555 1555 2.54 LINK SG CYS A 445 ZN ZN A 702 1555 1555 2.35 LINK ND1 HIS A 447 ZN ZN A 702 1555 1555 1.92 LINK ND1 HIS A 450 ZN ZN A 701 1555 1555 2.25 LINK SG CYS A 453 ZN ZN A 701 1555 1555 2.13 LINK SG CYS A 469 ZN ZN A 702 1555 1555 2.25 LINK SG CYS A 472 ZN ZN A 702 1555 1555 2.28 LINK SG CYS B 412 ZN ZN B 702 1555 1555 2.81 LINK SG CYS B 415 ZN ZN B 702 1555 1555 2.34 LINK SG CYS B 445 ZN ZN B 701 1555 1555 2.25 LINK ND1 HIS B 447 ZN ZN B 701 1555 1555 2.35 LINK ND1 HIS B 450 ZN ZN B 702 1555 1555 2.54 LINK SG CYS B 453 ZN ZN B 702 1555 1555 2.46 LINK SG CYS B 469 ZN ZN B 701 1555 1555 2.26 LINK SG CYS B 472 ZN ZN B 701 1555 1555 2.48 CISPEP 1 PHE A 533 PRO A 534 0 3.16 CISPEP 2 TYR A 596 PRO A 597 0 -0.60 CISPEP 3 PHE B 533 PRO B 534 0 1.23 CISPEP 4 TYR B 596 PRO B 597 0 -3.03 SITE 1 AC1 4 CYS A 412 CYS A 415 HIS A 450 CYS A 453 SITE 1 AC2 4 CYS A 445 HIS A 447 CYS A 469 CYS A 472 SITE 1 AC3 4 CYS B 445 HIS B 447 CYS B 469 CYS B 472 SITE 1 AC4 4 CYS B 412 CYS B 415 HIS B 450 CYS B 453 CRYST1 41.756 219.585 120.822 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008277 0.00000