HEADER RNA BINDING PROTEIN 17-FEB-20 6Y2Z TITLE NG DOMAIN OF HUMAN SRP54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SRP54; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRP54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SRP54 NG DOMAIN, PROTEIN TRANSLOCATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.D.JUAIRE,K.WILD,I.SINNING REVDAT 4 24-JAN-24 6Y2Z 1 REMARK REVDAT 3 20-JAN-21 6Y2Z 1 JRNL REVDAT 2 16-DEC-20 6Y2Z 1 JRNL REVDAT 1 23-SEP-20 6Y2Z 0 JRNL AUTH K.D.JUAIRE,K.LAPOUGE,M.M.M.BECKER,I.KOTOVA,M.MICHELHANS, JRNL AUTH 2 R.CARAPITO,K.WILD,S.BAHRAM,I.SINNING JRNL TITL STRUCTURAL AND FUNCTIONAL IMPACT OF SRP54 MUTATIONS CAUSING JRNL TITL 2 SEVERE CONGENITAL NEUTROPENIA. JRNL REF STRUCTURE V. 29 15 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33053321 JRNL DOI 10.1016/J.STR.2020.09.008 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3710 - 5.3002 1.00 2876 142 0.1852 0.2379 REMARK 3 2 5.3002 - 4.2077 1.00 2740 128 0.1580 0.1747 REMARK 3 3 4.2077 - 3.6760 1.00 2696 154 0.1615 0.2160 REMARK 3 4 3.6760 - 3.3400 1.00 2680 128 0.1897 0.2243 REMARK 3 5 3.3400 - 3.1007 1.00 2670 141 0.2192 0.2546 REMARK 3 6 3.1007 - 2.9179 1.00 2665 134 0.2230 0.2726 REMARK 3 7 2.9179 - 2.7718 1.00 2655 131 0.2252 0.3013 REMARK 3 8 2.7718 - 2.6511 1.00 2594 134 0.2359 0.2809 REMARK 3 9 2.6511 - 2.5491 1.00 2668 138 0.2342 0.2950 REMARK 3 10 2.5491 - 2.4611 1.00 2629 130 0.2406 0.2938 REMARK 3 11 2.4611 - 2.3842 1.00 2615 152 0.2386 0.2837 REMARK 3 12 2.3842 - 2.3160 1.00 2634 126 0.2469 0.3287 REMARK 3 13 2.3160 - 2.2550 1.00 2616 143 0.2606 0.2728 REMARK 3 14 2.2550 - 2.2000 1.00 2600 133 0.2894 0.3353 REMARK 3 15 2.2000 - 2.1500 1.00 2657 128 0.3191 0.3170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4739 REMARK 3 ANGLE : 0.860 6388 REMARK 3 CHIRALITY : 0.054 736 REMARK 3 PLANARITY : 0.005 812 REMARK 3 DIHEDRAL : 18.046 2878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2788 3.7889 -45.4732 REMARK 3 T TENSOR REMARK 3 T11: 0.3068 T22: 0.2837 REMARK 3 T33: 0.3146 T12: 0.0385 REMARK 3 T13: 0.0468 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.9771 L22: 3.0029 REMARK 3 L33: 3.6838 L12: 0.6962 REMARK 3 L13: 1.5573 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.4912 S13: 0.1768 REMARK 3 S21: 0.1083 S22: -0.1148 S23: -0.0138 REMARK 3 S31: -0.0825 S32: 0.4075 S33: 0.1232 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8723 -6.7183 -39.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.1964 REMARK 3 T33: 0.3929 T12: -0.0003 REMARK 3 T13: 0.0129 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 7.4844 L22: 4.1256 REMARK 3 L33: 8.7282 L12: -2.4839 REMARK 3 L13: 2.1384 L23: -3.3258 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: 0.0769 S13: -0.1547 REMARK 3 S21: -0.3412 S22: -0.0099 S23: 0.4124 REMARK 3 S31: 0.3870 S32: -0.3111 S33: -0.0995 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9888 3.1796 -44.1547 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.4727 REMARK 3 T33: 0.4358 T12: 0.0568 REMARK 3 T13: -0.0267 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 6.0432 L22: 4.7983 REMARK 3 L33: 3.0075 L12: -3.9423 REMARK 3 L13: 4.0991 L23: -3.3926 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: -0.2954 S13: -0.3130 REMARK 3 S21: -0.4837 S22: -0.0479 S23: 0.7127 REMARK 3 S31: 0.1450 S32: -1.0687 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0197 14.8448 -11.6149 REMARK 3 T TENSOR REMARK 3 T11: 0.5419 T22: 0.3156 REMARK 3 T33: 0.2621 T12: 0.0077 REMARK 3 T13: 0.0750 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.3040 L22: 3.1210 REMARK 3 L33: 2.5450 L12: 0.1229 REMARK 3 L13: 0.8410 L23: 1.7700 REMARK 3 S TENSOR REMARK 3 S11: -0.1116 S12: -0.0961 S13: 0.1253 REMARK 3 S21: -0.0017 S22: 0.0303 S23: -0.0606 REMARK 3 S31: -0.2244 S32: -0.1087 S33: 0.1071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5732 12.0621 -2.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.5478 T22: 0.3714 REMARK 3 T33: 0.2525 T12: 0.0552 REMARK 3 T13: 0.0031 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.0520 L22: 5.3068 REMARK 3 L33: 3.4761 L12: -1.1732 REMARK 3 L13: 0.9372 L23: 1.3656 REMARK 3 S TENSOR REMARK 3 S11: -0.2561 S12: -0.4433 S13: 0.0829 REMARK 3 S21: 0.7330 S22: 0.2964 S23: -0.2086 REMARK 3 S31: 0.3099 S32: 0.0252 S33: -0.0501 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9513 4.9840 -22.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 0.2719 REMARK 3 T33: 0.2569 T12: 0.0079 REMARK 3 T13: 0.0277 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.0921 L22: 3.2642 REMARK 3 L33: 3.3256 L12: 0.5801 REMARK 3 L13: 0.8438 L23: 1.1303 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: -0.0922 S13: -0.0299 REMARK 3 S21: 0.1087 S22: -0.1358 S23: 0.2008 REMARK 3 S31: -0.0400 S32: -0.1533 S33: 0.0063 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2176 -21.5252 -44.7376 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.1688 REMARK 3 T33: 0.2813 T12: 0.0041 REMARK 3 T13: 0.0193 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.5814 L22: 2.8700 REMARK 3 L33: 5.7856 L12: -1.2502 REMARK 3 L13: -2.1817 L23: 0.9881 REMARK 3 S TENSOR REMARK 3 S11: 0.1010 S12: 0.1538 S13: 0.0495 REMARK 3 S21: -0.4562 S22: -0.0553 S23: -0.1604 REMARK 3 S31: 0.0217 S32: 0.0595 S33: -0.0789 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9138 -33.3956 -13.8924 REMARK 3 T TENSOR REMARK 3 T11: 0.5452 T22: 0.6175 REMARK 3 T33: 0.3445 T12: -0.1336 REMARK 3 T13: -0.0484 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.4210 L22: 2.8169 REMARK 3 L33: 3.2714 L12: 0.5504 REMARK 3 L13: -1.9190 L23: -2.1338 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: -0.6240 S13: -0.1531 REMARK 3 S21: 0.5047 S22: -0.1796 S23: -0.0360 REMARK 3 S31: -0.0613 S32: 0.2858 S33: 0.0221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292105970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.371 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.76000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5L3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA2HPO4 0.8 M K2HPO4 0.8 M HEPES 0.1 M REMARK 280 (PH 7.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.22150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.25200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.83400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.25200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.22150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.83400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY B 111 O2 PO4 B 301 1.81 REMARK 500 O HOH A 448 O HOH A 485 1.84 REMARK 500 O HOH A 503 O HOH A 525 1.86 REMARK 500 O HOH A 534 O HOH B 485 1.88 REMARK 500 OG SER B 244 O HOH B 401 1.97 REMARK 500 OD1 ASP A 138 O HOH A 401 1.97 REMARK 500 O HOH B 412 O HOH B 415 1.97 REMARK 500 O HOH A 479 O HOH A 507 1.98 REMARK 500 O PRO B 96 O HOH B 402 2.04 REMARK 500 O HOH A 424 O HOH A 509 2.04 REMARK 500 O HOH A 477 O HOH A 527 2.06 REMARK 500 O HIS B 253 O HOH B 403 2.08 REMARK 500 OE2 GLU A 230 O HOH A 402 2.09 REMARK 500 OH TYR B 125 O HOH B 404 2.11 REMARK 500 NH1 ARG A 53 O HOH A 403 2.12 REMARK 500 OE1 GLU A 204 O HOH A 404 2.12 REMARK 500 NH1 ARG B 53 O HOH B 405 2.13 REMARK 500 O HOH A 485 O HOH A 520 2.14 REMARK 500 ND1 HIS B -2 O HOH B 406 2.15 REMARK 500 OE1 GLU B 230 O HOH B 407 2.17 REMARK 500 NZ LYS A 100 O HOH A 405 2.18 REMARK 500 OE2 GLU A 204 O HOH A 406 2.18 REMARK 500 O HOH A 430 O HOH A 520 2.18 REMARK 500 OD2 ASP A 280 O HOH A 407 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 66 134.73 -35.25 REMARK 500 THR A 164 -39.05 -143.99 REMARK 500 LEU B 3 47.95 -95.61 REMARK 500 SER B 224 -17.48 -49.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 85 O REMARK 620 2 ASP A 88 O 79.1 REMARK 620 3 HOH A 464 O 150.3 77.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 85 O REMARK 620 2 ASP B 88 O 78.6 REMARK 620 3 HOH B 430 O 150.1 80.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PO4 B 301 and GLY B REMARK 800 111 DBREF 6Y2Z A 1 296 UNP P61011 SRP54_HUMAN 1 296 DBREF 6Y2Z B 1 296 UNP P61011 SRP54_HUMAN 1 296 SEQADV 6Y2Z MET A -6 UNP P61011 INITIATING METHIONINE SEQADV 6Y2Z GLY A -5 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS A -4 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS A -3 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS A -2 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS A -1 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS A 0 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z MET B -6 UNP P61011 INITIATING METHIONINE SEQADV 6Y2Z GLY B -5 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS B -4 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS B -3 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS B -2 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS B -1 UNP P61011 EXPRESSION TAG SEQADV 6Y2Z HIS B 0 UNP P61011 EXPRESSION TAG SEQRES 1 A 303 MET GLY HIS HIS HIS HIS HIS MET VAL LEU ALA ASP LEU SEQRES 2 A 303 GLY ARG LYS ILE THR SER ALA LEU ARG SER LEU SER ASN SEQRES 3 A 303 ALA THR ILE ILE ASN GLU GLU VAL LEU ASN ALA MET LEU SEQRES 4 A 303 LYS GLU VAL CYS THR ALA LEU LEU GLU ALA ASP VAL ASN SEQRES 5 A 303 ILE LYS LEU VAL LYS GLN LEU ARG GLU ASN VAL LYS SER SEQRES 6 A 303 ALA ILE ASP LEU GLU GLU MET ALA SER GLY LEU ASN LYS SEQRES 7 A 303 ARG LYS MET ILE GLN HIS ALA VAL PHE LYS GLU LEU VAL SEQRES 8 A 303 LYS LEU VAL ASP PRO GLY VAL LYS ALA TRP THR PRO THR SEQRES 9 A 303 LYS GLY LYS GLN ASN VAL ILE MET PHE VAL GLY LEU GLN SEQRES 10 A 303 GLY SER GLY LYS THR THR THR CYS SER LYS LEU ALA TYR SEQRES 11 A 303 TYR TYR GLN ARG LYS GLY TRP LYS THR CYS LEU ILE CYS SEQRES 12 A 303 ALA ASP THR PHE ARG ALA GLY ALA PHE ASP GLN LEU LYS SEQRES 13 A 303 GLN ASN ALA THR LYS ALA ARG ILE PRO PHE TYR GLY SER SEQRES 14 A 303 TYR THR GLU MET ASP PRO VAL ILE ILE ALA SER GLU GLY SEQRES 15 A 303 VAL GLU LYS PHE LYS ASN GLU ASN PHE GLU ILE ILE ILE SEQRES 16 A 303 VAL ASP THR SER GLY ARG HIS LYS GLN GLU ASP SER LEU SEQRES 17 A 303 PHE GLU GLU MET LEU GLN VAL ALA ASN ALA ILE GLN PRO SEQRES 18 A 303 ASP ASN ILE VAL TYR VAL MET ASP ALA SER ILE GLY GLN SEQRES 19 A 303 ALA CYS GLU ALA GLN ALA LYS ALA PHE LYS ASP LYS VAL SEQRES 20 A 303 ASP VAL ALA SER VAL ILE VAL THR LYS LEU ASP GLY HIS SEQRES 21 A 303 ALA LYS GLY GLY GLY ALA LEU SER ALA VAL ALA ALA THR SEQRES 22 A 303 LYS SER PRO ILE ILE PHE ILE GLY THR GLY GLU HIS ILE SEQRES 23 A 303 ASP ASP PHE GLU PRO PHE LYS THR GLN PRO PHE ILE SER SEQRES 24 A 303 LYS LEU LEU GLY SEQRES 1 B 303 MET GLY HIS HIS HIS HIS HIS MET VAL LEU ALA ASP LEU SEQRES 2 B 303 GLY ARG LYS ILE THR SER ALA LEU ARG SER LEU SER ASN SEQRES 3 B 303 ALA THR ILE ILE ASN GLU GLU VAL LEU ASN ALA MET LEU SEQRES 4 B 303 LYS GLU VAL CYS THR ALA LEU LEU GLU ALA ASP VAL ASN SEQRES 5 B 303 ILE LYS LEU VAL LYS GLN LEU ARG GLU ASN VAL LYS SER SEQRES 6 B 303 ALA ILE ASP LEU GLU GLU MET ALA SER GLY LEU ASN LYS SEQRES 7 B 303 ARG LYS MET ILE GLN HIS ALA VAL PHE LYS GLU LEU VAL SEQRES 8 B 303 LYS LEU VAL ASP PRO GLY VAL LYS ALA TRP THR PRO THR SEQRES 9 B 303 LYS GLY LYS GLN ASN VAL ILE MET PHE VAL GLY LEU GLN SEQRES 10 B 303 GLY SER GLY LYS THR THR THR CYS SER LYS LEU ALA TYR SEQRES 11 B 303 TYR TYR GLN ARG LYS GLY TRP LYS THR CYS LEU ILE CYS SEQRES 12 B 303 ALA ASP THR PHE ARG ALA GLY ALA PHE ASP GLN LEU LYS SEQRES 13 B 303 GLN ASN ALA THR LYS ALA ARG ILE PRO PHE TYR GLY SER SEQRES 14 B 303 TYR THR GLU MET ASP PRO VAL ILE ILE ALA SER GLU GLY SEQRES 15 B 303 VAL GLU LYS PHE LYS ASN GLU ASN PHE GLU ILE ILE ILE SEQRES 16 B 303 VAL ASP THR SER GLY ARG HIS LYS GLN GLU ASP SER LEU SEQRES 17 B 303 PHE GLU GLU MET LEU GLN VAL ALA ASN ALA ILE GLN PRO SEQRES 18 B 303 ASP ASN ILE VAL TYR VAL MET ASP ALA SER ILE GLY GLN SEQRES 19 B 303 ALA CYS GLU ALA GLN ALA LYS ALA PHE LYS ASP LYS VAL SEQRES 20 B 303 ASP VAL ALA SER VAL ILE VAL THR LYS LEU ASP GLY HIS SEQRES 21 B 303 ALA LYS GLY GLY GLY ALA LEU SER ALA VAL ALA ALA THR SEQRES 22 B 303 LYS SER PRO ILE ILE PHE ILE GLY THR GLY GLU HIS ILE SEQRES 23 B 303 ASP ASP PHE GLU PRO PHE LYS THR GLN PRO PHE ILE SER SEQRES 24 B 303 LYS LEU LEU GLY HET PO4 A 301 5 HET MG A 302 1 HET PO4 B 301 5 HET MG B 302 1 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *227(H2 O) HELIX 1 AA1 LEU A 3 ALA A 20 1 18 HELIX 2 AA2 ASN A 24 GLU A 41 1 18 HELIX 3 AA3 ASN A 45 ILE A 60 1 16 HELIX 4 AA4 ASN A 70 VAL A 87 1 18 HELIX 5 AA5 GLY A 113 LYS A 128 1 16 HELIX 6 AA6 ALA A 142 ARG A 156 1 15 HELIX 7 AA7 ASP A 167 GLU A 182 1 16 HELIX 8 AA8 GLN A 197 GLN A 213 1 17 HELIX 9 AA9 SER A 224 GLN A 227 5 4 HELIX 10 AB1 ALA A 228 ASP A 238 1 11 HELIX 11 AB2 LYS A 255 THR A 266 1 12 HELIX 12 AB3 LYS A 286 GLY A 296 1 11 HELIX 13 AB4 HIS B -3 MET B 1 5 5 HELIX 14 AB5 LEU B 3 ALA B 20 1 18 HELIX 15 AB6 ASN B 24 ALA B 42 1 19 HELIX 16 AB7 ASN B 45 ILE B 60 1 16 HELIX 17 AB8 ASN B 70 ASP B 88 1 19 HELIX 18 AB9 GLY B 113 LYS B 128 1 16 HELIX 19 AC1 ALA B 142 ARG B 156 1 15 HELIX 20 AC2 ASP B 167 GLU B 182 1 16 HELIX 21 AC3 GLN B 197 GLN B 213 1 17 HELIX 22 AC4 SER B 224 GLN B 227 5 4 HELIX 23 AC5 ALA B 228 LYS B 239 1 12 HELIX 24 AC6 LYS B 255 THR B 266 1 12 HELIX 25 AC7 LYS B 286 GLY B 296 1 11 SHEET 1 AA1 8 PHE A 159 TYR A 160 0 SHEET 2 AA1 8 THR A 132 CYS A 136 1 N CYS A 136 O TYR A 160 SHEET 3 AA1 8 ILE A 186 ASP A 190 1 O ASP A 190 N ILE A 135 SHEET 4 AA1 8 ASN A 102 GLY A 108 1 N ILE A 104 O VAL A 189 SHEET 5 AA1 8 ASN A 216 ASP A 222 1 O VAL A 220 N VAL A 107 SHEET 6 AA1 8 ALA A 243 THR A 248 1 O SER A 244 N TYR A 219 SHEET 7 AA1 8 ILE A 270 GLY A 274 1 O GLY A 274 N VAL A 247 SHEET 8 AA1 8 PHE A 282 PRO A 284 -1 O GLU A 283 N ILE A 273 SHEET 1 AA2 8 PHE B 159 TYR B 160 0 SHEET 2 AA2 8 THR B 132 CYS B 136 1 N CYS B 136 O TYR B 160 SHEET 3 AA2 8 ILE B 186 ASP B 190 1 O ASP B 190 N ILE B 135 SHEET 4 AA2 8 ASN B 102 GLY B 108 1 N ASN B 102 O ILE B 187 SHEET 5 AA2 8 ASN B 216 ASP B 222 1 O VAL B 218 N MET B 105 SHEET 6 AA2 8 ALA B 243 THR B 248 1 O THR B 248 N MET B 221 SHEET 7 AA2 8 ILE B 270 GLY B 274 1 O GLY B 274 N VAL B 247 SHEET 8 AA2 8 PHE B 282 PRO B 284 -1 O GLU B 283 N ILE B 273 LINK N GLY B 111 O2 PO4 B 301 1555 1555 1.31 LINK O LYS A 85 MG MG A 302 1555 1555 2.44 LINK O ASP A 88 MG MG A 302 1555 1555 2.66 LINK MG MG A 302 O HOH A 464 1555 1555 2.84 LINK O LYS B 85 MG MG B 302 1555 1555 2.61 LINK O ASP B 88 MG MG B 302 1555 1555 2.86 LINK MG MG B 302 O HOH B 430 1555 1555 2.51 SITE 1 AC1 7 GLN A 110 GLY A 111 SER A 112 GLY A 113 SITE 2 AC1 7 LYS A 114 HOH A 409 HOH A 480 SITE 1 AC2 3 LYS A 85 ASP A 88 HOH A 464 SITE 1 AC3 3 LYS B 85 ASP B 88 HOH B 430 SITE 1 AC4 7 LEU B 109 GLN B 110 SER B 112 GLY B 113 SITE 2 AC4 7 LYS B 114 LYS B 249 HOH B 458 CRYST1 50.443 87.668 170.504 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005865 0.00000