HEADER VIRAL PROTEIN 18-FEB-20 6Y3B TITLE CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA VIRUS IN TITLE 2 COMPLEX WITH INHIBITOR MI-2110 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GENOME POLYPROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BZIPRO KEYWDS FLAVIVIRIN, SERINE PROTEASE, VIRAL PROTEIN, NS2B-NS3, ZIKA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HUBER,A.HEINE,T.STEINMETZER REVDAT 3 24-JAN-24 6Y3B 1 REMARK REVDAT 2 19-AUG-20 6Y3B 1 JRNL REVDAT 1 08-JUL-20 6Y3B 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9100 - 3.6400 0.99 2836 150 0.1689 0.1834 REMARK 3 2 3.6400 - 2.8900 1.00 2710 142 0.1547 0.1901 REMARK 3 3 2.8900 - 2.5200 1.00 2682 142 0.1591 0.1709 REMARK 3 4 2.5200 - 2.2900 1.00 2669 140 0.1650 0.2170 REMARK 3 5 2.2900 - 2.1300 1.00 2685 141 0.1448 0.1775 REMARK 3 6 2.1300 - 2.0000 1.00 2643 139 0.1565 0.1784 REMARK 3 7 2.0000 - 1.9000 1.00 2641 139 0.1507 0.1894 REMARK 3 8 1.9000 - 1.8200 1.00 2628 139 0.1569 0.1862 REMARK 3 9 1.8200 - 1.7500 1.00 2633 138 0.1589 0.1961 REMARK 3 10 1.7500 - 1.6900 1.00 2631 139 0.1741 0.1926 REMARK 3 11 1.6900 - 1.6400 1.00 2636 138 0.1857 0.1958 REMARK 3 12 1.6400 - 1.5900 0.99 2619 137 0.2076 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.102 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.701 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1554 REMARK 3 ANGLE : 0.934 2125 REMARK 3 CHIRALITY : 0.061 238 REMARK 3 PLANARITY : 0.005 284 REMARK 3 DIHEDRAL : 16.920 917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7338 -32.3489 3.8874 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.1718 REMARK 3 T33: 0.3189 T12: 0.0528 REMARK 3 T13: -0.0861 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 7.5683 L22: 2.8694 REMARK 3 L33: 3.4290 L12: 4.0299 REMARK 3 L13: -4.8704 L23: -2.1322 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.2071 S13: -0.5663 REMARK 3 S21: -0.4943 S22: 0.0601 S23: -0.1108 REMARK 3 S31: 1.2334 S32: 0.0827 S33: -0.1002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0274 -28.7928 18.7208 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.2835 REMARK 3 T33: 0.2945 T12: -0.0656 REMARK 3 T13: -0.0234 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: 4.5820 L22: 6.8854 REMARK 3 L33: 5.4158 L12: -5.6021 REMARK 3 L13: -4.9783 L23: 6.0925 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: -0.1009 S13: -0.4310 REMARK 3 S21: -0.0001 S22: -0.0952 S23: 0.6590 REMARK 3 S31: 0.1138 S32: 0.1249 S33: 0.2390 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4268 -16.4900 26.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.3974 T22: 0.3138 REMARK 3 T33: 0.3082 T12: -0.0582 REMARK 3 T13: -0.1150 T23: 0.0821 REMARK 3 L TENSOR REMARK 3 L11: 1.2002 L22: 7.2209 REMARK 3 L33: 4.9112 L12: 2.8923 REMARK 3 L13: -2.3228 L23: -5.9183 REMARK 3 S TENSOR REMARK 3 S11: 0.6686 S12: -0.7382 S13: -0.7924 REMARK 3 S21: 1.2142 S22: -0.9864 S23: -0.9948 REMARK 3 S31: -0.1643 S32: 0.7763 S33: 0.3345 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7123 -0.7683 15.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.2137 REMARK 3 T33: 0.2627 T12: -0.0350 REMARK 3 T13: -0.0120 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 9.2792 L22: 2.6810 REMARK 3 L33: 2.7109 L12: -3.0395 REMARK 3 L13: 1.8612 L23: 1.3175 REMARK 3 S TENSOR REMARK 3 S11: -0.1814 S12: -0.2552 S13: 0.2360 REMARK 3 S21: 0.3583 S22: 0.1452 S23: -0.4799 REMARK 3 S31: 0.0515 S32: -0.2082 S33: 0.0666 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2645 -2.9611 1.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.2320 REMARK 3 T33: 0.2166 T12: 0.0070 REMARK 3 T13: -0.0070 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 7.5024 L22: 8.8985 REMARK 3 L33: 4.6359 L12: 6.2652 REMARK 3 L13: 5.5157 L23:6.0335698 REMARK 3 S TENSOR REMARK 3 S11: -0.1587 S12: 0.3462 S13: 0.2077 REMARK 3 S21: -0.0478 S22: 0.1150 S23: 0.1467 REMARK 3 S31: -0.3016 S32: 0.2044 S33: 0.1134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4449 -28.9472 8.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1387 REMARK 3 T33: 0.1864 T12: 0.0202 REMARK 3 T13: -0.0752 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.4596 L22: 6.7643 REMARK 3 L33: 7.0897 L12: 0.0242 REMARK 3 L13: -1.9311 L23: 1.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.2061 S12: 0.2698 S13: -0.5382 REMARK 3 S21: -0.1060 S22: -0.0865 S23: -0.0872 REMARK 3 S31: 0.4857 S32: 0.0737 S33: 0.0761 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6148 -19.8077 7.3838 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1821 REMARK 3 T33: 0.2077 T12: 0.0130 REMARK 3 T13: 0.0063 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.9342 L22: 2.2965 REMARK 3 L33: 2.9491 L12: 0.8644 REMARK 3 L13: 1.5200 L23: 0.9612 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: -0.0418 S13: -0.0720 REMARK 3 S21: 0.1001 S22: -0.0739 S23: 0.2349 REMARK 3 S31: 0.1159 S32: -0.2743 S33: 0.0076 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8916 -13.1478 15.0465 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1745 REMARK 3 T33: 0.1701 T12: -0.0120 REMARK 3 T13: -0.0044 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0571 L22: 3.3821 REMARK 3 L33: 2.6661 L12: -0.2352 REMARK 3 L13: -0.1388 L23: 0.3443 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0557 S13: 0.0243 REMARK 3 S21: 0.2953 S22: -0.0269 S23: -0.0224 REMARK 3 S31: 0.0166 S32: 0.0573 S33: 0.0342 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7952 -10.7137 9.8250 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1257 REMARK 3 T33: 0.1845 T12: 0.0053 REMARK 3 T13: 0.0123 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.3485 L22: 2.0288 REMARK 3 L33: 2.4843 L12: 1.0646 REMARK 3 L13: 0.6339 L23: 0.3488 REMARK 3 S TENSOR REMARK 3 S11: -0.1487 S12: -0.4649 S13: 0.1022 REMARK 3 S21: 0.0258 S22: 0.0444 S23: 0.3184 REMARK 3 S31: 0.0014 S32: -0.1957 S33: 0.1304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.589 REMARK 200 RESOLUTION RANGE LOW (A) : 48.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04310 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE 2.0 M AMMONIUM REMARK 280 SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.31300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.56950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.24650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.56950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.31300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.24650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 ARG A 73 CZ NH1 NH2 REMARK 470 ARG B 28 NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CD CE NZ REMARK 470 ILE B 109 CD1 REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 119 NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 29 -110.84 -107.23 REMARK 500 LEU B 31 -136.17 -84.56 REMARK 500 CYS B 80 -7.61 80.38 REMARK 500 LEU B 92 -13.67 -148.76 REMARK 500 PRO B 175 176.13 -57.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O7N B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 DBREF 6Y3B A 45 96 UNP H8XX12 H8XX12_ZIKV 1411 1462 DBREF 6Y3B B 1 177 UNP H8XX12 H8XX12_ZIKV 1497 1673 SEQADV 6Y3B MET A 44 UNP H8XX12 INITIATING METHIONINE SEQADV 6Y3B GLY B 0 UNP H8XX12 EXPRESSION TAG SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET GOL B 201 6 HET O7N B 202 45 HET SO4 B 203 5 HETNAM GOL GLYCEROL HETNAM O7N 1-[(8~{R},15~{S},18~{S})-15,18-BIS(4-AZANYLBUTYL)-4,7, HETNAM 2 O7N 14,17,20-PENTAKIS(OXIDANYLIDENE)-3,6,13,16,19- HETNAM 3 O7N PENTAZABICYCLO[20.3.1]HEXACOSA-1(25),22(26),23-TRIEN- HETNAM 4 O7N 8-YL]GUANIDINE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 O7N C30 H50 N10 O5 FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *129(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 6 MET A 51 GLY A 57 0 SHEET 2 AA1 6 GLY B 21 ARG B 28 -1 O MET B 26 N TYR A 52 SHEET 3 AA1 6 SER B 33 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 4 AA1 6 VAL B 45 MET B 49 -1 O HIS B 47 N VAL B 40 SHEET 5 AA1 6 LEU B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 6 AA1 6 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N VAL B 95 O THR B 111 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SHEET 1 AA4 2 LEU B 58 SER B 60 0 SHEET 2 AA4 2 GLY B 63 LEU B 65 -1 O LEU B 65 N LEU B 58 SITE 1 AC1 7 ALA B 88 TRP B 89 ILE B 123 GLY B 124 SITE 2 AC1 7 ILE B 147 ILE B 165 HOH B 366 SITE 1 AC2 29 GLY A 82 ASP A 83 PHE A 84 SER A 85 SITE 2 AC2 29 HIS B 51 TYR B 68 GLY B 70 ASP B 71 SITE 3 AC2 29 VAL B 72 ASP B 129 TYR B 130 ALA B 132 SITE 4 AC2 29 SER B 135 GLY B 151 ASN B 152 GLY B 153 SITE 5 AC2 29 VAL B 155 GLY B 159 TYR B 161 VAL B 176 SITE 6 AC2 29 HOH B 319 HOH B 322 HOH B 330 HOH B 332 SITE 7 AC2 29 HOH B 348 HOH B 353 HOH B 354 HOH B 367 SITE 8 AC2 29 HOH B 370 SITE 1 AC3 5 LEU A 74 ARG B 64 ILE B 156 LYS B 157 SITE 2 AC3 5 HOH B 378 CRYST1 48.626 60.493 83.139 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012028 0.00000