HEADER OXIDOREDUCTASE 18-FEB-20 6Y3C TITLE HUMAN COX-1 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN G/H SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYCLOOXYGENASE-1,COX-1,PROSTAGLANDIN H2 SYNTHASE 1,PHS 1, COMPND 5 PROSTAGLANDIN-ENDOPEROXIDE SYNTHASE 1; COMPND 6 EC: 1.14.99.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTGS1, COX1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 1 BOLD-2017; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2449148 KEYWDS COX-1, CYCLOOXYGENASE, PEROXIDASE, PROSTAGLANDIN, HEME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MICIACCIA,B.D.BELVISO,M.IASELLI,S.FERORELLI,M.G.PERRONE, AUTHOR 2 R.CALIANDRO,A.SCILIMATI REVDAT 7 16-OCT-24 6Y3C 1 REMARK REVDAT 6 24-JAN-24 6Y3C 1 REMARK REVDAT 5 03-MAR-21 6Y3C 1 JRNL HETSYN REVDAT 4 29-JUL-20 6Y3C 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-APR-20 6Y3C 1 REMARK REVDAT 2 11-MAR-20 6Y3C 1 JRNL REVDAT 1 26-FEB-20 6Y3C 0 JRNL AUTH M.MICIACCIA,B.D.BELVISO,M.IASELLI,G.CINGOLANI,S.FERORELLI, JRNL AUTH 2 M.CAPPELLARI,P.LOGUERCIO POLOSA,M.G.PERRONE,R.CALIANDRO, JRNL AUTH 3 A.SCILIMATI JRNL TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN CYCLOOXYGENASE JRNL TITL 2 (HCOX)-1. JRNL REF SCI REP V. 11 4312 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 33619313 JRNL DOI 10.1038/S41598-021-83438-Z REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 12047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.8560 - 6.9906 1.00 1611 178 0.2139 0.2399 REMARK 3 2 6.9906 - 5.5491 1.00 1511 176 0.2210 0.3047 REMARK 3 3 5.5491 - 4.8477 1.00 1472 182 0.1677 0.2211 REMARK 3 4 4.8477 - 4.4045 1.00 1497 145 0.1663 0.2325 REMARK 3 5 4.4045 - 4.0889 0.99 1445 165 0.2200 0.2829 REMARK 3 6 4.0889 - 3.8478 0.84 1222 132 0.2455 0.3428 REMARK 3 7 3.8478 - 3.6551 0.67 971 117 0.2470 0.3162 REMARK 3 8 3.6551 - 3.4960 0.49 703 81 0.2604 0.2465 REMARK 3 9 3.4960 - 3.3614 0.27 400 39 0.2917 0.3630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4294 -59.5674 -1.3536 REMARK 3 T TENSOR REMARK 3 T11: 0.9234 T22: 0.9602 REMARK 3 T33: 1.1136 T12: -0.0370 REMARK 3 T13: 0.0181 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.5102 L22: 0.1426 REMARK 3 L33: 0.4614 L12: 0.0908 REMARK 3 L13: -0.2029 L23: 0.1849 REMARK 3 S TENSOR REMARK 3 S11: -0.2191 S12: -0.2566 S13: -0.0179 REMARK 3 S21: 0.1898 S22: 0.5373 S23: -0.5457 REMARK 3 S31: 0.3917 S32: 0.3549 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4615 -32.8624 2.5498 REMARK 3 T TENSOR REMARK 3 T11: 1.0506 T22: 0.8543 REMARK 3 T33: 1.3610 T12: -0.2945 REMARK 3 T13: -0.0949 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.0933 L22: 0.2944 REMARK 3 L33: 0.0448 L12: 0.1645 REMARK 3 L13: 0.0696 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.2297 S12: -0.2508 S13: 1.4496 REMARK 3 S21: -0.1726 S22: 0.0980 S23: -0.5618 REMARK 3 S31: 0.4026 S32: -0.1024 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2426 -60.5168 3.8909 REMARK 3 T TENSOR REMARK 3 T11: 0.9765 T22: 0.9252 REMARK 3 T33: 0.9123 T12: 0.0255 REMARK 3 T13: -0.0787 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.2856 L22: 0.0169 REMARK 3 L33: 0.3208 L12: 0.0863 REMARK 3 L13: -0.3133 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.3573 S13: -0.4829 REMARK 3 S21: 0.1005 S22: 0.0227 S23: 0.1066 REMARK 3 S31: 0.4082 S32: -0.0238 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1305 -51.8111 -2.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.7702 T22: 0.7791 REMARK 3 T33: 0.7677 T12: -0.0554 REMARK 3 T13: -0.0137 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 2.3120 L22: 1.4710 REMARK 3 L33: 1.4439 L12: -0.5390 REMARK 3 L13: 0.4291 L23: 0.5082 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: 0.0001 S13: -0.3845 REMARK 3 S21: 0.0896 S22: 0.0354 S23: 0.3159 REMARK 3 S31: 0.3431 S32: -0.2058 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 584 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9758 -49.9753 7.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.9342 T22: 0.7434 REMARK 3 T33: 0.7409 T12: -0.0343 REMARK 3 T13: 0.0473 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 1.4396 L22: 0.7975 REMARK 3 L33: 0.8561 L12: 0.0586 REMARK 3 L13: -0.5669 L23: 0.3491 REMARK 3 S TENSOR REMARK 3 S11: -0.2963 S12: -0.5861 S13: -0.2493 REMARK 3 S21: 0.3931 S22: 0.2195 S23: 0.0483 REMARK 3 S31: 0.0413 S32: 0.2439 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14886 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 91.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.46700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 4.18600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SIR2014 REMARK 200 STARTING MODEL: 5WBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE 0.7M, LICL 0.72M, PH REMARK 280 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.82667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.41333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.62000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.20667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.03333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.82667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 34.41333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 17.20667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.62000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 86.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.41333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 585 REMARK 465 SER A 586 REMARK 465 GLN A 587 REMARK 465 ASP A 588 REMARK 465 ASP A 589 REMARK 465 GLY A 590 REMARK 465 PRO A 591 REMARK 465 ALA A 592 REMARK 465 VAL A 593 REMARK 465 GLU A 594 REMARK 465 ARG A 595 REMARK 465 PRO A 596 REMARK 465 SER A 597 REMARK 465 THR A 598 REMARK 465 GLU A 599 REMARK 465 LEU A 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 265 O PRO A 281 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 31 75.70 59.37 REMARK 500 ASP A 135 34.45 -99.06 REMARK 500 ASP A 258 48.63 38.34 REMARK 500 HIS A 274 51.28 -90.10 REMARK 500 TRP A 387 34.27 -97.27 REMARK 500 ARG A 459 60.19 60.10 REMARK 500 THR A 561 17.31 57.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 817 DISTANCE = 7.86 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 DBREF 6Y3C A 25 600 UNP P23219 PGH1_HUMAN 24 599 SEQRES 1 A 576 ALA ASP PRO GLY ALA PRO THR PRO VAL ASN PRO CYS CYS SEQRES 2 A 576 TYR TYR PRO CYS GLN HIS GLN GLY ILE CYS VAL ARG PHE SEQRES 3 A 576 GLY LEU ASP ARG TYR GLN CYS ASP CYS THR ARG THR GLY SEQRES 4 A 576 TYR SER GLY PRO ASN CYS THR ILE PRO GLY LEU TRP THR SEQRES 5 A 576 TRP LEU ARG ASN SER LEU ARG PRO SER PRO SER PHE THR SEQRES 6 A 576 HIS PHE LEU LEU THR HIS GLY ARG TRP PHE TRP GLU PHE SEQRES 7 A 576 VAL ASN ALA THR PHE ILE ARG GLU MET LEU MET ARG LEU SEQRES 8 A 576 VAL LEU THR VAL ARG SER ASN LEU ILE PRO SER PRO PRO SEQRES 9 A 576 THR TYR ASN SER ALA HIS ASP TYR ILE SER TRP GLU SER SEQRES 10 A 576 PHE SER ASN VAL SER TYR TYR THR ARG ILE LEU PRO SER SEQRES 11 A 576 VAL PRO LYS ASP CYS PRO THR PRO MET GLY THR LYS GLY SEQRES 12 A 576 LYS LYS GLN LEU PRO ASP ALA GLN LEU LEU ALA ARG ARG SEQRES 13 A 576 PHE LEU LEU ARG ARG LYS PHE ILE PRO ASP PRO GLN GLY SEQRES 14 A 576 THR ASN LEU MET PHE ALA PHE PHE ALA GLN HIS PHE THR SEQRES 15 A 576 HIS GLN PHE PHE LYS THR SER GLY LYS MET GLY PRO GLY SEQRES 16 A 576 PHE THR LYS ALA LEU GLY HIS GLY VAL ASP LEU GLY HIS SEQRES 17 A 576 ILE TYR GLY ASP ASN LEU GLU ARG GLN TYR GLN LEU ARG SEQRES 18 A 576 LEU PHE LYS ASP GLY LYS LEU LYS TYR GLN VAL LEU ASP SEQRES 19 A 576 GLY GLU MET TYR PRO PRO SER VAL GLU GLU ALA PRO VAL SEQRES 20 A 576 LEU MET HIS TYR PRO ARG GLY ILE PRO PRO GLN SER GLN SEQRES 21 A 576 MET ALA VAL GLY GLN GLU VAL PHE GLY LEU LEU PRO GLY SEQRES 22 A 576 LEU MET LEU TYR ALA THR LEU TRP LEU ARG GLU HIS ASN SEQRES 23 A 576 ARG VAL CYS ASP LEU LEU LYS ALA GLU HIS PRO THR TRP SEQRES 24 A 576 GLY ASP GLU GLN LEU PHE GLN THR THR ARG LEU ILE LEU SEQRES 25 A 576 ILE GLY GLU THR ILE LYS ILE VAL ILE GLU GLU TYR VAL SEQRES 26 A 576 GLN GLN LEU SER GLY TYR PHE LEU GLN LEU LYS PHE ASP SEQRES 27 A 576 PRO GLU LEU LEU PHE GLY VAL GLN PHE GLN TYR ARG ASN SEQRES 28 A 576 ARG ILE ALA MET GLU PHE ASN HIS LEU TYR HIS TRP HIS SEQRES 29 A 576 PRO LEU MET PRO ASP SER PHE LYS VAL GLY SER GLN GLU SEQRES 30 A 576 TYR SER TYR GLU GLN PHE LEU PHE ASN THR SER MET LEU SEQRES 31 A 576 VAL ASP TYR GLY VAL GLU ALA LEU VAL ASP ALA PHE SER SEQRES 32 A 576 ARG GLN ILE ALA GLY ARG ILE GLY GLY GLY ARG ASN MET SEQRES 33 A 576 ASP HIS HIS ILE LEU HIS VAL ALA VAL ASP VAL ILE ARG SEQRES 34 A 576 GLU SER ARG GLU MET ARG LEU GLN PRO PHE ASN GLU TYR SEQRES 35 A 576 ARG LYS ARG PHE GLY MET LYS PRO TYR THR SER PHE GLN SEQRES 36 A 576 GLU LEU VAL GLY GLU LYS GLU MET ALA ALA GLU LEU GLU SEQRES 37 A 576 GLU LEU TYR GLY ASP ILE ASP ALA LEU GLU PHE TYR PRO SEQRES 38 A 576 GLY LEU LEU LEU GLU LYS CYS HIS PRO ASN SER ILE PHE SEQRES 39 A 576 GLY GLU SER MET ILE GLU ILE GLY ALA PRO PHE SER LEU SEQRES 40 A 576 LYS GLY LEU LEU GLY ASN PRO ILE CYS SER PRO GLU TYR SEQRES 41 A 576 TRP LYS PRO SER THR PHE GLY GLY GLU VAL GLY PHE ASN SEQRES 42 A 576 ILE VAL LYS THR ALA THR LEU LYS LYS LEU VAL CYS LEU SEQRES 43 A 576 ASN THR LYS THR CYS PRO TYR VAL SER PHE ARG VAL PRO SEQRES 44 A 576 ASP ALA SER GLN ASP ASP GLY PRO ALA VAL GLU ARG PRO SEQRES 45 A 576 SER THR GLU LEU HET NAG B 1 13 HET NAG B 2 14 HET BMA B 3 11 HET BMA B 4 11 HET BMA B 5 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET FLC A 710 13 HET FLC A 711 13 HET FLC A 712 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FLC CITRATE ANION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 5 FLC 3(C6 H5 O7 3-) FORMUL 8 HOH *17(H2 O) HELIX 1 AA1 ASN A 34 TYR A 39 5 6 HELIX 2 AA2 GLY A 73 SER A 81 1 9 HELIX 3 AA3 SER A 85 LEU A 93 1 9 HELIX 4 AA4 GLY A 96 ALA A 105 1 10 HELIX 5 AA5 PHE A 107 ASN A 122 1 16 HELIX 6 AA6 SER A 138 ASN A 144 1 7 HELIX 7 AA7 ASP A 173 PHE A 181 1 9 HELIX 8 AA8 ASN A 195 HIS A 207 1 13 HELIX 9 AA9 LEU A 230 GLY A 235 1 6 HELIX 10 AB1 LEU A 238 ARG A 245 1 8 HELIX 11 AB2 VAL A 291 LEU A 294 5 4 HELIX 12 AB3 LEU A 295 HIS A 320 1 26 HELIX 13 AB4 GLY A 324 GLU A 347 1 24 HELIX 14 AB5 GLU A 347 GLY A 354 1 8 HELIX 15 AB6 ASP A 362 PHE A 367 5 6 HELIX 16 AB7 ALA A 378 TYR A 385 1 8 HELIX 17 AB8 TRP A 387 MET A 391 5 5 HELIX 18 AB9 SER A 403 LEU A 408 1 6 HELIX 19 AC1 SER A 412 SER A 427 1 16 HELIX 20 AC2 ASP A 441 HIS A 443 5 3 HELIX 21 AC3 ILE A 444 MET A 458 1 15 HELIX 22 AC4 PRO A 462 PHE A 470 1 9 HELIX 23 AC5 PHE A 478 GLY A 483 1 6 HELIX 24 AC6 GLU A 484 GLY A 496 1 13 HELIX 25 AC7 ASP A 497 LEU A 501 5 5 HELIX 26 AC8 GLU A 502 LEU A 509 1 8 HELIX 27 AC9 GLY A 519 LEU A 535 1 17 HELIX 28 AD1 ASN A 537 SER A 541 5 5 HELIX 29 AD2 GLY A 552 LYS A 560 1 9 HELIX 30 AD3 LEU A 564 CYS A 569 1 6 SHEET 1 AA1 2 ILE A 46 PHE A 50 0 SHEET 2 AA1 2 ARG A 54 ASP A 58 -1 O ASP A 58 N ILE A 46 SHEET 1 AA2 2 TYR A 64 SER A 65 0 SHEET 2 AA2 2 ILE A 71 PRO A 72 -1 O ILE A 71 N SER A 65 SHEET 1 AA3 2 TYR A 130 ASN A 131 0 SHEET 2 AA3 2 THR A 149 ARG A 150 -1 O ARG A 150 N TYR A 130 SHEET 1 AA4 2 GLN A 255 LEU A 257 0 SHEET 2 AA4 2 GLU A 260 TYR A 262 -1 O GLU A 260 N LEU A 257 SSBOND 1 CYS A 36 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 37 CYS A 159 1555 1555 2.03 SSBOND 3 CYS A 41 CYS A 57 1555 1555 2.03 SSBOND 4 CYS A 59 CYS A 69 1555 1555 2.03 SSBOND 5 CYS A 569 CYS A 575 1555 1555 2.03 LINK ND2 ASN A 68 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 144 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 410 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 BMA B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 BMA B 5 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CRYST1 182.110 182.110 103.240 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005491 0.003170 0.000000 0.00000 SCALE2 0.000000 0.006341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009686 0.00000