HEADER ALLERGEN 18-FEB-20 6Y3I TITLE NMR SOLUTION STRUCTURE OF THE HAZELNUT ALLERGEN COR A 1.0402 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ALLERGEN VARIANT COR A 1.0402; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYLUS AVELLANA; SOURCE 3 ORGANISM_COMMON: EUROPEAN HAZEL; SOURCE 4 ORGANISM_TAXID: 13451; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B (+) KEYWDS PR-10 RELATED PROTEIN, HAZELNUT ALLERGEN, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.FUEHRER,A.S.KAMENIK,R.ZEINDL,B.NOTHEGGER,F.HOFER,N.REIDER, AUTHOR 2 K.R.LIEDL,M.TOLLINGER REVDAT 2 03-MAR-21 6Y3I 1 JRNL REVDAT 1 17-FEB-21 6Y3I 0 JRNL AUTH S.FUHRER,A.S.KAMENIK,R.ZEINDL,B.NOTHEGGER,F.HOFER,N.REIDER, JRNL AUTH 2 K.R.LIEDL,M.TOLLINGER JRNL TITL INVERSE RELATION BETWEEN STRUCTURAL FLEXIBILITY AND IGE JRNL TITL 2 REACTIVITY OF COR A 1 HAZELNUT ALLERGENS. JRNL REF SCI REP V. 11 4173 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 33603065 JRNL DOI 10.1038/S41598-021-83705-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106599. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 COR A 1.0402, 20 MM SODIUM REMARK 210 PHOSPHATE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-99% 15N] COR A REMARK 210 1.0402, 20 MM SODIUM PHOSPHATE, REMARK 210 2 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-15N HSQC REMARK 210 NH2 ONLY; 2D 1H-13C HSQC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 TOCSY; 3D (H)CC(CO)NH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 7 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 9 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 12 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 17 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 18 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 20 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 59 -40.36 -148.10 REMARK 500 1 GLU A 60 68.73 30.36 REMARK 500 2 ALA A 59 -35.16 -143.86 REMARK 500 2 GLU A 60 72.48 29.65 REMARK 500 3 ALA A 59 33.19 -153.67 REMARK 500 4 ALA A 59 -39.26 -142.76 REMARK 500 4 SER A 62 -5.21 62.83 REMARK 500 5 ALA A 59 40.90 -144.80 REMARK 500 5 GLU A 60 85.12 -65.91 REMARK 500 5 SER A 62 -8.80 63.02 REMARK 500 5 HIS A 109 0.59 -69.92 REMARK 500 6 ALA A 34 57.78 -145.43 REMARK 500 6 ALA A 59 -58.07 -139.81 REMARK 500 6 SER A 62 -28.39 59.28 REMARK 500 6 GLU A 63 89.45 -63.36 REMARK 500 6 THR A 94 -35.44 -138.70 REMARK 500 7 ALA A 59 -36.50 -145.96 REMARK 500 7 GLU A 60 70.38 32.96 REMARK 500 7 SER A 62 12.91 59.19 REMARK 500 8 ALA A 59 -67.67 -135.93 REMARK 500 8 SER A 62 -31.73 62.78 REMARK 500 9 ALA A 59 -40.90 -149.35 REMARK 500 9 SER A 62 -52.00 59.37 REMARK 500 10 ALA A 59 -35.90 -137.55 REMARK 500 11 ALA A 59 -32.27 -143.95 REMARK 500 11 GLU A 60 58.18 38.91 REMARK 500 11 PRO A 156 -5.34 -59.46 REMARK 500 12 ALA A 59 -36.29 -152.75 REMARK 500 13 ALA A 59 -34.23 -132.97 REMARK 500 13 SER A 62 -8.40 60.59 REMARK 500 14 ALA A 59 -41.63 -144.98 REMARK 500 15 SER A 62 -4.00 58.89 REMARK 500 16 ALA A 59 -40.34 -149.79 REMARK 500 16 SER A 62 -34.10 66.06 REMARK 500 16 GLU A 63 94.49 -68.95 REMARK 500 17 ALA A 34 54.82 -140.02 REMARK 500 17 SER A 62 -39.64 61.04 REMARK 500 17 GLU A 63 70.42 -69.03 REMARK 500 18 ALA A 34 58.21 -141.73 REMARK 500 18 ALA A 59 40.36 -156.09 REMARK 500 18 SER A 62 -22.41 64.35 REMARK 500 20 ALA A 59 34.73 -149.13 REMARK 500 20 SER A 62 -28.07 61.10 REMARK 500 20 ILE A 85 104.87 -59.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 84 ILE A 85 1 148.90 REMARK 500 ILE A 85 ILE A 86 1 140.86 REMARK 500 THR A 94 LEU A 95 1 143.55 REMARK 500 SER A 84 ILE A 85 2 146.34 REMARK 500 ILE A 85 ILE A 86 3 148.68 REMARK 500 SER A 84 ILE A 85 4 141.40 REMARK 500 THR A 94 LEU A 95 4 147.52 REMARK 500 SER A 84 ILE A 85 5 149.32 REMARK 500 ILE A 85 ILE A 86 5 147.91 REMARK 500 SER A 84 ILE A 85 6 145.83 REMARK 500 ILE A 85 ILE A 86 6 149.78 REMARK 500 THR A 94 LEU A 95 6 139.64 REMARK 500 SER A 84 ILE A 85 7 145.22 REMARK 500 SER A 84 ILE A 85 8 144.08 REMARK 500 ILE A 85 ILE A 86 8 147.35 REMARK 500 THR A 94 LEU A 95 8 146.44 REMARK 500 SER A 84 ILE A 85 9 146.56 REMARK 500 SER A 84 ILE A 85 10 144.54 REMARK 500 SER A 84 ILE A 85 11 141.21 REMARK 500 ILE A 85 ILE A 86 11 143.38 REMARK 500 SER A 84 ILE A 85 12 146.37 REMARK 500 ILE A 85 ILE A 86 13 148.75 REMARK 500 ILE A 85 ILE A 86 14 148.72 REMARK 500 MET A 104 ALA A 105 14 149.68 REMARK 500 SER A 84 ILE A 85 15 149.85 REMARK 500 ILE A 85 ILE A 86 15 145.77 REMARK 500 SER A 84 ILE A 85 16 140.33 REMARK 500 SER A 84 ILE A 85 17 142.14 REMARK 500 THR A 94 LEU A 95 17 142.07 REMARK 500 MET A 104 ALA A 105 17 149.43 REMARK 500 SER A 84 ILE A 85 18 144.98 REMARK 500 THR A 94 LEU A 95 18 144.50 REMARK 500 ILE A 85 ILE A 86 19 146.98 REMARK 500 SER A 84 ILE A 85 20 141.02 REMARK 500 ILE A 85 ILE A 86 20 148.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 81 0.09 SIDE CHAIN REMARK 500 2 TYR A 81 0.10 SIDE CHAIN REMARK 500 4 TYR A 81 0.11 SIDE CHAIN REMARK 500 5 TYR A 81 0.10 SIDE CHAIN REMARK 500 6 TYR A 81 0.10 SIDE CHAIN REMARK 500 7 TYR A 81 0.11 SIDE CHAIN REMARK 500 8 TYR A 81 0.10 SIDE CHAIN REMARK 500 9 TYR A 81 0.11 SIDE CHAIN REMARK 500 10 TYR A 81 0.09 SIDE CHAIN REMARK 500 11 TYR A 81 0.12 SIDE CHAIN REMARK 500 12 TYR A 81 0.11 SIDE CHAIN REMARK 500 13 TYR A 81 0.11 SIDE CHAIN REMARK 500 15 TYR A 81 0.10 SIDE CHAIN REMARK 500 15 TYR A 159 0.07 SIDE CHAIN REMARK 500 16 TYR A 81 0.10 SIDE CHAIN REMARK 500 17 TYR A 81 0.11 SIDE CHAIN REMARK 500 18 TYR A 81 0.11 SIDE CHAIN REMARK 500 19 TYR A 81 0.11 SIDE CHAIN REMARK 500 20 TYR A 81 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27961 RELATED DB: BMRB DBREF 6Y3I A 1 160 UNP Q9FPK4 Q9FPK4_CORAV 2 161 SEQRES 1 A 160 GLY VAL PHE SER TYR GLU ASP GLU ALA THR SER VAL ILE SEQRES 2 A 160 PRO PRO ALA ARG LEU PHE LYS SER PHE VAL LEU ASP ALA SEQRES 3 A 160 ASP ASN LEU ILE PRO LYS VAL ALA PRO GLN HIS PHE THR SEQRES 4 A 160 GLY ALA GLU ASN LEU GLU GLY ASN GLY GLY PRO GLY THR SEQRES 5 A 160 ILE LYS LYS ILE THR PHE ALA GLU GLY SER GLU PHE LYS SEQRES 6 A 160 TYR MET LYS HIS LYS VAL GLU GLU ILE ASP HIS ALA ASN SEQRES 7 A 160 PHE LYS TYR CYS TYR SER ILE ILE GLU GLY GLY PRO LEU SEQRES 8 A 160 GLY HIS THR LEU GLU LYS ILE SER TYR GLU ILE LYS MET SEQRES 9 A 160 ALA ALA ALA PRO HIS GLY GLY GLY SER ILE LEU LYS ILE SEQRES 10 A 160 THR SER LYS TYR HIS THR LYS GLY ASN ALA SER ILE SER SEQRES 11 A 160 GLU GLU GLU ILE LYS ALA GLY LYS GLU LYS ALA ALA GLY SEQRES 12 A 160 LEU PHE LYS ALA VAL GLU ALA TYR LEU LEU ALA HIS PRO SEQRES 13 A 160 ASP THR TYR CYS HELIX 1 AA1 PRO A 15 LEU A 24 1 10 HELIX 2 AA2 ALA A 26 ALA A 34 1 9 HELIX 3 AA3 GLU A 131 HIS A 155 1 25 SHEET 1 AA1 7 VAL A 2 SER A 11 0 SHEET 2 AA1 7 GLY A 112 THR A 123 -1 O LEU A 115 N ALA A 9 SHEET 3 AA1 7 GLU A 96 ALA A 106 -1 N GLU A 101 O THR A 118 SHEET 4 AA1 7 PHE A 79 GLU A 87 -1 N TYR A 83 O TYR A 100 SHEET 5 AA1 7 PHE A 64 ASP A 75 -1 O LYS A 70 N SER A 84 SHEET 6 AA1 7 GLY A 51 ALA A 59 -1 N LYS A 54 O HIS A 69 SHEET 7 AA1 7 THR A 39 GLU A 45 -1 N GLU A 42 O LYS A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1