HEADER TRANSCRIPTION 19-FEB-20 6Y42 TITLE CRYSTAL STRUCTURE OF RSRR COMPLEXED TO A 39 BASEPAIR DNA FRAGMENT OF TITLE 2 THE RSRR PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRF2 FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (39-MER); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (39-MER); COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE (STRAIN ATCC 10712 / SOURCE 3 CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745); SOURCE 4 ORGANISM_TAXID: 953739; SOURCE 5 ATCC: 10712; SOURCE 6 GENE: SVEN_6563; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGS-21A; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE ATCC 10712; SOURCE 15 ORGANISM_TAXID: 953739; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE ATCC 10712; SOURCE 19 ORGANISM_TAXID: 953739 KEYWDS REDOX SENSOR, IRON SULFUR CLUSTER, DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 3 24-JAN-24 6Y42 1 LINK REVDAT 2 25-MAR-20 6Y42 1 JRNL REVDAT 1 04-MAR-20 6Y42 0 JRNL AUTH J.C.CRACK,P.AMARA,A.VOLBEDA,J.M.MOUESCA,R.ROHAC, JRNL AUTH 2 M.T.PELLICER MARTINEZ,C.Y.HUANG,O.GIGAREL,C.RINALDI, JRNL AUTH 3 N.E.LE BRUN,J.C.FONTECILLA-CAMPS JRNL TITL ELECTRON AND PROTON TRANSFERS MODULATE DNA BINDING BY THE JRNL TITL 2 TRANSCRIPTION REGULATOR RSRR. JRNL REF J.AM.CHEM.SOC. V. 142 5104 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32078310 JRNL DOI 10.1021/JACS.9B12250 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VOLBEDA,M.T.P.MARTINEZ,J.C.CRACK,P.AMARA,O.GIGAREL, REMARK 1 AUTH 2 J.T.MUNNOCH,M.I.HUTCHINGS,C.DARNAULT,N.E.LE BRUN, REMARK 1 AUTH 3 J.C.FONTECILLA-CAMPS REMARK 1 TITL CRYSTAL STRUCTURE OF THE TRANSCRIPTION REGULATOR RSRR REMARK 1 TITL 2 REVEALS A [2FE-2S] CLUSTER COORDINATED BY CYS, GLU, AND HIS REMARK 1 TITL 3 RESIDUES. REMARK 1 REF J. AM. CHEM. SOC. V. 141 2367 2019 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 30657661 REMARK 1 DOI 10.1021/JACS.8B10823 REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 5671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 386 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.4540 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.4990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2282 REMARK 3 NUCLEIC ACID ATOMS : 1476 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 253.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.17000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -7.03000 REMARK 3 B12 (A**2) : 1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.358 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 132.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4179 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3080 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5740 ; 1.107 ; 1.438 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7162 ; 1.306 ; 1.957 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 4.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;28.832 ;20.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;14.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3482 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 797 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Y42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6038 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, MGCL2, CACL2, PEG1000, PEG3350, REMARK 280 MES, ANAEROBIC (IN GLOVE BOX), VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.39667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.79333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.59500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.99167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.19833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.39667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.79333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.99167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.59500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.19833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 MET B 1 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 DG E 1 REMARK 465 DG E 38 REMARK 465 DG E 39 REMARK 465 DC F 1 REMARK 465 DC F 2 REMARK 465 DC F 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CD NE CZ NH1 NH2 REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 37.50 -145.91 REMARK 500 ASP A 34 75.94 40.28 REMARK 500 SER A 36 103.56 -45.91 REMARK 500 THR A 60 42.71 -88.80 REMARK 500 VAL A 81 -69.37 -91.90 REMARK 500 LEU A 99 58.22 -98.70 REMARK 500 PRO A 103 6.04 -67.24 REMARK 500 CYS A 106 52.97 -101.00 REMARK 500 HIS B 33 31.69 -145.14 REMARK 500 ASP B 34 75.16 37.06 REMARK 500 SER B 36 104.34 -44.53 REMARK 500 THR B 60 32.61 -95.63 REMARK 500 VAL B 81 -70.91 -79.05 REMARK 500 GLU B 92 72.39 55.76 REMARK 500 LEU B 99 55.63 -96.59 REMARK 500 CYS B 106 52.22 -104.47 REMARK 500 CYS B 110 127.80 -35.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 FES A 202 S1 112.1 REMARK 620 3 FES A 202 S2 101.8 103.2 REMARK 620 4 CYS B 90 SG 125.8 102.0 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 FES A 202 S1 119.7 REMARK 620 3 FES A 202 S2 94.9 103.4 REMARK 620 4 CYS B 110 SG 109.7 101.5 129.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 FES A 201 S1 108.7 REMARK 620 3 FES A 201 S2 86.6 102.5 REMARK 620 4 GLU B 8 OE2 115.1 130.2 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 FES A 201 S1 119.7 REMARK 620 3 FES A 201 S2 128.9 103.1 REMARK 620 4 HIS B 12 NE2 99.6 109.5 90.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 202 DBREF 6Y42 A 1 160 UNP F2RGC9 F2RGC9_STRVP 1 160 DBREF 6Y42 B 1 160 UNP F2RGC9 F2RGC9_STRVP 1 160 DBREF 6Y42 E 1 39 PDB 6Y42 6Y42 1 39 DBREF 6Y42 F 1 39 PDB 6Y42 6Y42 1 39 SEQADV 6Y42 HIS A 161 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS A 162 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS A 163 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS A 164 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS A 165 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS A 166 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 161 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 162 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 163 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 164 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 165 UNP F2RGC9 EXPRESSION TAG SEQADV 6Y42 HIS B 166 UNP F2RGC9 EXPRESSION TAG SEQRES 1 A 166 MET LYS LEU SER GLY GLY VAL GLU TRP ALA LEU HIS CYS SEQRES 2 A 166 CYS VAL VAL LEU THR ALA ALA SER ARG PRO VAL PRO ALA SEQRES 3 A 166 ALA ARG LEU ALA GLU LEU HIS ASP VAL SER PRO SER TYR SEQRES 4 A 166 LEU ALA LYS GLN MET GLN ALA LEU SER ARG ALA GLY LEU SEQRES 5 A 166 VAL ARG SER VAL GLN GLY LYS THR GLY GLY TYR VAL LEU SEQRES 6 A 166 THR ARG PRO ALA VAL GLU ILE THR LEU LEU ASP VAL VAL SEQRES 7 A 166 GLN ALA VAL ASP GLY PRO ASP PRO ALA PHE VAL CYS THR SEQRES 8 A 166 GLU ILE ARG GLN ARG GLY PRO LEU ALA THR PRO PRO GLU SEQRES 9 A 166 LYS CYS THR LYS ALA CYS PRO ILE ALA ARG ALA MET GLY SEQRES 10 A 166 ALA ALA GLU ALA ALA TRP ARG ALA SER LEU ALA ALA THR SEQRES 11 A 166 THR ILE ALA ASP LEU VAL ALA THR VAL ASP ASP GLU SER SEQRES 12 A 166 GLY PRO ASP ALA LEU PRO GLY VAL GLY ALA TRP LEU ILE SEQRES 13 A 166 GLU GLY LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 166 MET LYS LEU SER GLY GLY VAL GLU TRP ALA LEU HIS CYS SEQRES 2 B 166 CYS VAL VAL LEU THR ALA ALA SER ARG PRO VAL PRO ALA SEQRES 3 B 166 ALA ARG LEU ALA GLU LEU HIS ASP VAL SER PRO SER TYR SEQRES 4 B 166 LEU ALA LYS GLN MET GLN ALA LEU SER ARG ALA GLY LEU SEQRES 5 B 166 VAL ARG SER VAL GLN GLY LYS THR GLY GLY TYR VAL LEU SEQRES 6 B 166 THR ARG PRO ALA VAL GLU ILE THR LEU LEU ASP VAL VAL SEQRES 7 B 166 GLN ALA VAL ASP GLY PRO ASP PRO ALA PHE VAL CYS THR SEQRES 8 B 166 GLU ILE ARG GLN ARG GLY PRO LEU ALA THR PRO PRO GLU SEQRES 9 B 166 LYS CYS THR LYS ALA CYS PRO ILE ALA ARG ALA MET GLY SEQRES 10 B 166 ALA ALA GLU ALA ALA TRP ARG ALA SER LEU ALA ALA THR SEQRES 11 B 166 THR ILE ALA ASP LEU VAL ALA THR VAL ASP ASP GLU SER SEQRES 12 B 166 GLY PRO ASP ALA LEU PRO GLY VAL GLY ALA TRP LEU ILE SEQRES 13 B 166 GLU GLY LEU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 E 39 DG DA DG DA DT DA DA DT DA DC DT DC DG SEQRES 2 E 39 DG DA DT DA DG DT DC DT DG DT DG DT DC SEQRES 3 E 39 DC DG DA DG DT DC DA DA DA DT DG DG DG SEQRES 1 F 39 DC DC DC DA DT DT DT DG DA DC DT DC DG SEQRES 2 F 39 DG DA DC DA DC DA DG DA DC DT DA DT DC SEQRES 3 F 39 DC DG DA DG DT DA DT DT DA DT DC DT DC HET FES A 201 4 HET FES A 202 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 5 FES 2(FE2 S2) HELIX 1 AA1 GLY A 5 THR A 18 1 14 HELIX 2 AA2 PRO A 25 HIS A 33 1 9 HELIX 3 AA3 SER A 36 ALA A 50 1 15 HELIX 4 AA4 THR A 73 ASP A 82 1 10 HELIX 5 AA5 CYS A 110 THR A 130 1 21 HELIX 6 AA6 THR A 131 SER A 143 1 13 HELIX 7 AA7 ASP A 146 ILE A 156 1 11 HELIX 8 AA8 GLY B 5 LEU B 17 1 13 HELIX 9 AA9 THR B 18 ALA B 20 5 3 HELIX 10 AB1 PRO B 25 HIS B 33 1 9 HELIX 11 AB2 SER B 36 ALA B 50 1 15 HELIX 12 AB3 PRO B 68 ILE B 72 5 5 HELIX 13 AB4 THR B 73 GLY B 83 1 11 HELIX 14 AB5 GLU B 92 ARG B 96 5 5 HELIX 15 AB6 CYS B 110 ALA B 129 1 20 HELIX 16 AB7 THR B 131 SER B 143 1 13 HELIX 17 AB8 ASP B 146 ILE B 156 1 11 SHEET 1 AA1 2 VAL A 53 VAL A 56 0 SHEET 2 AA1 2 GLY A 62 LEU A 65 -1 O VAL A 64 N ARG A 54 SHEET 1 AA2 2 VAL B 53 VAL B 56 0 SHEET 2 AA2 2 GLY B 62 LEU B 65 -1 O GLY B 62 N VAL B 56 LINK OE2 GLU A 8 FE1 FES A 202 1555 1555 2.01 LINK NE2 HIS A 12 FE2 FES A 202 1555 1555 2.09 LINK SG CYS A 90 FE1 FES A 201 1555 1555 2.30 LINK SG CYS A 110 FE2 FES A 201 1555 1555 2.31 LINK FE1 FES A 201 OE2 GLU B 8 1555 1555 2.02 LINK FE2 FES A 201 NE2 HIS B 12 1555 1555 2.09 LINK FE1 FES A 202 SG CYS B 90 1555 1555 2.30 LINK FE2 FES A 202 SG CYS B 110 1555 1555 2.33 SITE 1 AC1 5 CYS A 90 CYS A 110 ALA A 113 GLU B 8 SITE 2 AC1 5 HIS B 12 SITE 1 AC2 6 GLU A 8 HIS A 12 CYS B 90 ILE B 93 SITE 2 AC2 6 CYS B 110 ILE B 112 CRYST1 197.370 197.370 73.190 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005067 0.002925 0.000000 0.00000 SCALE2 0.000000 0.005850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013663 0.00000