HEADER HYDROLASE 23-FEB-20 6Y4S TITLE HUMAN KALLIKREIN-RELATED PEPTIDASE 7 (KLK7) IN THE UNLIGANDED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN-7; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HK7,SERINE PROTEASE 6,STRATUM CORNEUM CHYMOTRYPTIC ENZYME, COMPND 5 HSCCE; COMPND 6 EC: 3.4.21.117; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK7, PRSS6, SCCE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KALLIKREIN 7, HK7, SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HANKE,N.STRATER REVDAT 3 24-JAN-24 6Y4S 1 REMARK REVDAT 2 24-JUN-20 6Y4S 1 JRNL REVDAT 1 20-MAY-20 6Y4S 0 JRNL AUTH S.HANKE,C.A.TINDALL,J.PIPPEL,D.ULBRICHT,B.PIROTTE, JRNL AUTH 2 M.REBOUD-RAVAUX,J.T.HEIKER,N.STRATER JRNL TITL STRUCTURAL STUDIES ON THE INHIBITORY BINDING MODE OF JRNL TITL 2 AROMATIC COUMARINIC ESTERS TO HUMAN KALLIKREIN-RELATED JRNL TITL 3 PEPTIDASE 7. JRNL REF J.MED.CHEM. V. 63 5723 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32374603 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01806 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.86 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 796 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2368 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 755 REMARK 3 BIN R VALUE (WORKING SET) : 0.2353 REMARK 3 BIN FREE R VALUE : 0.2611 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 41 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.59860 REMARK 3 B22 (A**2) : -7.59860 REMARK 3 B33 (A**2) : 15.19730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.259 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.195 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5312 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7223 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1804 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 870 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5312 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 684 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5738 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -41.1665 16.0610 29.4718 REMARK 3 T TENSOR REMARK 3 T11: -0.0579 T22: -0.1133 REMARK 3 T33: -0.2018 T12: 0.0627 REMARK 3 T13: 0.0093 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.0464 L22: 2.4829 REMARK 3 L33: 2.6207 L12: -1.3879 REMARK 3 L13: 0.0865 L23: -0.1634 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.1756 S13: 0.0901 REMARK 3 S21: -0.1881 S22: -0.0637 S23: -0.1353 REMARK 3 S31: 0.1987 S32: -0.0327 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.5720 -7.5267 43.4621 REMARK 3 T TENSOR REMARK 3 T11: -0.0867 T22: -0.0322 REMARK 3 T33: -0.1618 T12: 0.0228 REMARK 3 T13: -0.0223 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.8452 L22: 1.6822 REMARK 3 L33: 3.3197 L12: 0.3456 REMARK 3 L13: -0.4834 L23: -0.0440 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.0207 S13: -0.0396 REMARK 3 S21: 0.0144 S22: 0.0163 S23: 0.0588 REMARK 3 S31: 0.3447 S32: -0.3560 S33: -0.0507 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -29.4240 -15.0855 6.8862 REMARK 3 T TENSOR REMARK 3 T11: -0.1043 T22: -0.1174 REMARK 3 T33: -0.3701 T12: 0.1320 REMARK 3 T13: 0.0427 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 3.0556 L22: 6.0895 REMARK 3 L33: 7.9348 L12: 0.2493 REMARK 3 L13: -0.1492 L23: -2.7118 REMARK 3 S TENSOR REMARK 3 S11: 0.1064 S12: 0.0234 S13: -0.1243 REMARK 3 S21: -0.4765 S22: -0.4912 S23: -0.3875 REMARK 3 S31: 0.5721 S32: 0.2871 S33: 0.3849 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.43600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 6.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3BSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.9 M AMMONIUM SULPHATE, 0.1 M HEPES, REMARK 280 PH 8.5 AND 0.5-2 % PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.66359 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 108.71333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.57500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.66359 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 108.71333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.57500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.66359 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.71333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.57500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.66359 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.71333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.57500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.66359 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.71333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.57500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.66359 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.71333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.32718 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 217.42667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.32718 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 217.42667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.32718 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 217.42667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.32718 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 217.42667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.32718 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 217.42667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.32718 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 217.42667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 171 -62.38 -98.70 REMARK 500 LYS A 173 -122.61 48.62 REMARK 500 VAL B 171 -62.03 -98.57 REMARK 500 LYS B 173 -121.57 48.59 REMARK 500 SER B 195 130.26 -39.99 REMARK 500 ASN C 38 18.72 -153.85 REMARK 500 VAL C 171 -62.86 -97.95 REMARK 500 LYS C 173 -123.26 49.47 REMARK 500 LYS C 188 108.61 -46.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BSQ RELATED DB: PDB REMARK 900 PREVIOUSLY DETERMINED STRUCTURE DBREF 6Y4S A 16 246 UNP P49862 KLK7_HUMAN 30 253 DBREF 6Y4S B 16 246 UNP P49862 KLK7_HUMAN 30 253 DBREF 6Y4S C 16 246 UNP P49862 KLK7_HUMAN 30 253 SEQRES 1 A 224 ILE ILE ASP GLY ALA PRO CYS ALA ARG GLY SER HIS PRO SEQRES 2 A 224 TRP GLN VAL ALA LEU LEU SER GLY ASN GLN LEU HIS CYS SEQRES 3 A 224 GLY GLY VAL LEU VAL ASN GLU ARG TRP VAL LEU THR ALA SEQRES 4 A 224 ALA HIS CYS LYS MET ASN GLU TYR THR VAL HIS LEU GLY SEQRES 5 A 224 SER ASP THR LEU GLY ASP ARG ARG ALA GLN ARG ILE LYS SEQRES 6 A 224 ALA SER LYS SER PHE ARG HIS PRO GLY TYR SER THR GLN SEQRES 7 A 224 THR HIS VAL ASN ASP LEU MET LEU VAL LYS LEU ASN SER SEQRES 8 A 224 GLN ALA ARG LEU SER SER MET VAL LYS LYS VAL ARG LEU SEQRES 9 A 224 PRO SER ARG CYS GLU PRO PRO GLY THR THR CYS THR VAL SEQRES 10 A 224 SER GLY TRP GLY THR THR THR SER PRO ASP VAL THR PHE SEQRES 11 A 224 PRO SER ASP LEU MET CYS VAL ASP VAL LYS LEU ILE SER SEQRES 12 A 224 PRO GLN ASP CYS THR LYS VAL TYR LYS ASP LEU LEU GLU SEQRES 13 A 224 ASN SER MET LEU CYS ALA GLY ILE PRO ASP SER LYS LYS SEQRES 14 A 224 ASN ALA CYS ASN GLY ASP SER GLY GLY PRO LEU VAL CYS SEQRES 15 A 224 ARG GLY THR LEU GLN GLY LEU VAL SER TRP GLY THR PHE SEQRES 16 A 224 PRO CYS GLY GLN PRO ASN ASP PRO GLY VAL TYR THR GLN SEQRES 17 A 224 VAL CYS LYS PHE THR LYS TRP ILE ASN ASP THR MET LYS SEQRES 18 A 224 LYS HIS ARG SEQRES 1 B 224 ILE ILE ASP GLY ALA PRO CYS ALA ARG GLY SER HIS PRO SEQRES 2 B 224 TRP GLN VAL ALA LEU LEU SER GLY ASN GLN LEU HIS CYS SEQRES 3 B 224 GLY GLY VAL LEU VAL ASN GLU ARG TRP VAL LEU THR ALA SEQRES 4 B 224 ALA HIS CYS LYS MET ASN GLU TYR THR VAL HIS LEU GLY SEQRES 5 B 224 SER ASP THR LEU GLY ASP ARG ARG ALA GLN ARG ILE LYS SEQRES 6 B 224 ALA SER LYS SER PHE ARG HIS PRO GLY TYR SER THR GLN SEQRES 7 B 224 THR HIS VAL ASN ASP LEU MET LEU VAL LYS LEU ASN SER SEQRES 8 B 224 GLN ALA ARG LEU SER SER MET VAL LYS LYS VAL ARG LEU SEQRES 9 B 224 PRO SER ARG CYS GLU PRO PRO GLY THR THR CYS THR VAL SEQRES 10 B 224 SER GLY TRP GLY THR THR THR SER PRO ASP VAL THR PHE SEQRES 11 B 224 PRO SER ASP LEU MET CYS VAL ASP VAL LYS LEU ILE SER SEQRES 12 B 224 PRO GLN ASP CYS THR LYS VAL TYR LYS ASP LEU LEU GLU SEQRES 13 B 224 ASN SER MET LEU CYS ALA GLY ILE PRO ASP SER LYS LYS SEQRES 14 B 224 ASN ALA CYS ASN GLY ASP SER GLY GLY PRO LEU VAL CYS SEQRES 15 B 224 ARG GLY THR LEU GLN GLY LEU VAL SER TRP GLY THR PHE SEQRES 16 B 224 PRO CYS GLY GLN PRO ASN ASP PRO GLY VAL TYR THR GLN SEQRES 17 B 224 VAL CYS LYS PHE THR LYS TRP ILE ASN ASP THR MET LYS SEQRES 18 B 224 LYS HIS ARG SEQRES 1 C 224 ILE ILE ASP GLY ALA PRO CYS ALA ARG GLY SER HIS PRO SEQRES 2 C 224 TRP GLN VAL ALA LEU LEU SER GLY ASN GLN LEU HIS CYS SEQRES 3 C 224 GLY GLY VAL LEU VAL ASN GLU ARG TRP VAL LEU THR ALA SEQRES 4 C 224 ALA HIS CYS LYS MET ASN GLU TYR THR VAL HIS LEU GLY SEQRES 5 C 224 SER ASP THR LEU GLY ASP ARG ARG ALA GLN ARG ILE LYS SEQRES 6 C 224 ALA SER LYS SER PHE ARG HIS PRO GLY TYR SER THR GLN SEQRES 7 C 224 THR HIS VAL ASN ASP LEU MET LEU VAL LYS LEU ASN SER SEQRES 8 C 224 GLN ALA ARG LEU SER SER MET VAL LYS LYS VAL ARG LEU SEQRES 9 C 224 PRO SER ARG CYS GLU PRO PRO GLY THR THR CYS THR VAL SEQRES 10 C 224 SER GLY TRP GLY THR THR THR SER PRO ASP VAL THR PHE SEQRES 11 C 224 PRO SER ASP LEU MET CYS VAL ASP VAL LYS LEU ILE SER SEQRES 12 C 224 PRO GLN ASP CYS THR LYS VAL TYR LYS ASP LEU LEU GLU SEQRES 13 C 224 ASN SER MET LEU CYS ALA GLY ILE PRO ASP SER LYS LYS SEQRES 14 C 224 ASN ALA CYS ASN GLY ASP SER GLY GLY PRO LEU VAL CYS SEQRES 15 C 224 ARG GLY THR LEU GLN GLY LEU VAL SER TRP GLY THR PHE SEQRES 16 C 224 PRO CYS GLY GLN PRO ASN ASP PRO GLY VAL TYR THR GLN SEQRES 17 C 224 VAL CYS LYS PHE THR LYS TRP ILE ASN ASP THR MET LYS SEQRES 18 C 224 LYS HIS ARG HET PGE A 301 10 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 C 305 5 HETNAM PGE TRIETHYLENE GLYCOL HETNAM SO4 SULFATE ION FORMUL 4 PGE C6 H14 O4 FORMUL 5 SO4 14(O4 S 2-) FORMUL 19 HOH *82(H2 O) HELIX 1 AA1 ALA A 55 LYS A 59 5 5 HELIX 2 AA2 SER A 164 LYS A 173 1 10 HELIX 3 AA3 ASP A 174 LEU A 176 5 3 HELIX 4 AA4 PHE A 234 HIS A 245 1 12 HELIX 5 AA5 ALA B 55 LYS B 59 5 5 HELIX 6 AA6 SER B 164 LYS B 173 1 10 HELIX 7 AA7 ASP B 174 LEU B 176 5 3 HELIX 8 AA8 PHE B 234 HIS B 245 1 12 HELIX 9 AA9 ALA C 55 LYS C 59 5 5 HELIX 10 AB1 SER C 164 LYS C 173 1 10 HELIX 11 AB2 ASP C 174 LEU C 176 5 3 HELIX 12 AB3 PHE C 234 HIS C 245 1 12 SHEET 1 AA1 8 ALA A 20 PRO A 21 0 SHEET 2 AA1 8 MET A 156 ILE A 163 -1 O CYS A 157 N ALA A 20 SHEET 3 AA1 8 MET A 180 GLY A 184 -1 O GLY A 184 N LYS A 161 SHEET 4 AA1 8 GLY A 226 GLN A 230 -1 O TYR A 228 N LEU A 181 SHEET 5 AA1 8 THR A 208 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 AA1 8 PRO A 198 CYS A 201 -1 N LEU A 199 O GLN A 210 SHEET 7 AA1 8 THR A 135 GLY A 140 -1 N THR A 137 O VAL A 200 SHEET 8 AA1 8 MET A 156 ILE A 163 -1 O VAL A 160 N CYS A 136 SHEET 1 AA2 7 GLN A 79 ALA A 83 0 SHEET 2 AA2 7 TYR A 63 LEU A 67 -1 N LEU A 67 O GLN A 79 SHEET 3 AA2 7 GLN A 30 SER A 35 -1 N ALA A 32 O HIS A 66 SHEET 4 AA2 7 GLN A 39 ASN A 48 -1 O CYS A 42 N LEU A 33 SHEET 5 AA2 7 TRP A 51 THR A 54 -1 O LEU A 53 N VAL A 45 SHEET 6 AA2 7 MET A 104 LYS A 107 -1 O VAL A 106 N VAL A 52 SHEET 7 AA2 7 LYS A 87 ARG A 90 -1 N PHE A 89 O LEU A 105 SHEET 1 AA3 8 ALA B 20 PRO B 21 0 SHEET 2 AA3 8 MET B 156 ILE B 163 -1 O CYS B 157 N ALA B 20 SHEET 3 AA3 8 MET B 180 GLY B 184 -1 O CYS B 182 N ILE B 163 SHEET 4 AA3 8 GLY B 226 GLN B 230 -1 O TYR B 228 N LEU B 181 SHEET 5 AA3 8 THR B 208 TRP B 215 -1 N TRP B 215 O VAL B 227 SHEET 6 AA3 8 PRO B 198 CYS B 201 -1 N LEU B 199 O GLN B 210 SHEET 7 AA3 8 THR B 135 GLY B 140 -1 N THR B 137 O VAL B 200 SHEET 8 AA3 8 MET B 156 ILE B 163 -1 O VAL B 160 N CYS B 136 SHEET 1 AA4 7 GLN B 79 ALA B 83 0 SHEET 2 AA4 7 TYR B 63 LEU B 67 -1 N LEU B 67 O GLN B 79 SHEET 3 AA4 7 GLN B 30 SER B 35 -1 N ALA B 32 O HIS B 66 SHEET 4 AA4 7 GLN B 39 ASN B 48 -1 O CYS B 42 N LEU B 33 SHEET 5 AA4 7 TRP B 51 THR B 54 -1 O LEU B 53 N VAL B 45 SHEET 6 AA4 7 MET B 104 LYS B 107 -1 O VAL B 106 N VAL B 52 SHEET 7 AA4 7 LYS B 87 ARG B 90 -1 N PHE B 89 O LEU B 105 SHEET 1 AA5 8 ALA C 20 PRO C 21 0 SHEET 2 AA5 8 MET C 156 ILE C 163 -1 O CYS C 157 N ALA C 20 SHEET 3 AA5 8 MET C 180 GLY C 184 -1 O GLY C 184 N LYS C 161 SHEET 4 AA5 8 GLY C 226 GLN C 230 -1 O TYR C 228 N LEU C 181 SHEET 5 AA5 8 THR C 208 TRP C 215 -1 N TRP C 215 O VAL C 227 SHEET 6 AA5 8 PRO C 198 CYS C 201 -1 N LEU C 199 O GLN C 210 SHEET 7 AA5 8 THR C 135 GLY C 140 -1 N THR C 137 O VAL C 200 SHEET 8 AA5 8 MET C 156 ILE C 163 -1 O VAL C 160 N CYS C 136 SHEET 1 AA6 7 GLN C 79 ALA C 83 0 SHEET 2 AA6 7 TYR C 63 LEU C 67 -1 N LEU C 67 O GLN C 79 SHEET 3 AA6 7 GLN C 30 SER C 35 -1 N LEU C 34 O THR C 64 SHEET 4 AA6 7 GLN C 39 ASN C 48 -1 O CYS C 42 N LEU C 33 SHEET 5 AA6 7 TRP C 51 THR C 54 -1 O LEU C 53 N VAL C 45 SHEET 6 AA6 7 MET C 104 LYS C 107 -1 O VAL C 106 N VAL C 52 SHEET 7 AA6 7 LYS C 87 ARG C 90 -1 N PHE C 89 O LEU C 105 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.04 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 3 CYS A 128 CYS A 232 1555 1555 2.04 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.04 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.04 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 7 CYS B 22 CYS B 157 1555 1555 2.05 SSBOND 8 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 9 CYS B 128 CYS B 232 1555 1555 2.04 SSBOND 10 CYS B 136 CYS B 201 1555 1555 2.03 SSBOND 11 CYS B 168 CYS B 182 1555 1555 2.02 SSBOND 12 CYS B 191 CYS B 220 1555 1555 2.04 SSBOND 13 CYS C 22 CYS C 157 1555 1555 2.03 SSBOND 14 CYS C 42 CYS C 58 1555 1555 2.03 SSBOND 15 CYS C 128 CYS C 232 1555 1555 2.04 SSBOND 16 CYS C 136 CYS C 201 1555 1555 2.04 SSBOND 17 CYS C 168 CYS C 182 1555 1555 2.04 SSBOND 18 CYS C 191 CYS C 220 1555 1555 2.03 CISPEP 1 SER A 146 PRO A 147 0 2.93 CISPEP 2 PHE A 218 PRO A 219 0 -0.48 CISPEP 3 SER B 146 PRO B 147 0 3.59 CISPEP 4 PHE B 218 PRO B 219 0 -0.89 CISPEP 5 SER C 146 PRO C 147 0 2.89 CISPEP 6 PHE C 218 PRO C 219 0 -0.71 SITE 1 AC1 2 TRP A 215 PHE B 218 SITE 1 AC2 5 LYS A 59 SER A 88 PHE A 89 ARG A 90 SITE 2 AC2 5 SO4 A 305 SITE 1 AC3 3 MET A 60 ASN A 61 GLU A 62 SITE 1 AC4 4 PRO A 165 ASN A 178 LYS A 233 HOH A 409 SITE 1 AC5 5 LYS A 59 SER A 84 LYS A 87 SER A 88 SITE 2 AC5 5 SO4 A 302 SITE 1 AC6 3 VAL A 158 ASP A 159 LYS A 188 SITE 1 AC7 3 SER A 125 ARG A 127 ARG C 80 SITE 1 AC8 4 ARG B 50 ASN B 109 SER B 110 GLN B 111 SITE 1 AC9 5 LYS B 59 SER B 84 LYS B 87 SER B 88 SITE 2 AC9 5 SO4 B 303 SITE 1 AD1 5 LYS B 59 SER B 88 PHE B 89 ARG B 90 SITE 2 AD1 5 SO4 B 302 SITE 1 AD2 5 LYS C 59 SER C 88 PHE C 89 ARG C 90 SITE 2 AD2 5 SO4 C 304 SITE 1 AD3 3 ARG C 50 SER C 110 GLN C 111 SITE 1 AD4 2 ARG C 50 GLN C 111 SITE 1 AD5 5 LYS C 59 ASN C 61 LYS C 87 SER C 88 SITE 2 AD5 5 SO4 C 301 SITE 1 AD6 3 MET C 60 ASN C 61 GLU C 62 CRYST1 113.150 113.150 326.140 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008838 0.005103 0.000000 0.00000 SCALE2 0.000000 0.010205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003066 0.00000