HEADER VIRAL PROTEIN 26-FEB-20 6Y68 TITLE STRUCTURE OF MAPORAL VIRUS ENVELOPE GLYCOPROTEIN GC IN POSTFUSION TITLE 2 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAPORAL VIRUS; SOURCE 3 ORGANISM_TAXID: 238817; SOURCE 4 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 6 EXPRESSION_SYSTEM_CELL: SCHNEIDER S2 CELLS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT350 KEYWDS CLASS-II FUSION PROTEIN HANTAVIRUS BUNYAVIRUS, VIRAL PROTEIN, KEYWDS 2 POSTFUSION CONFORMATION EXPDTA X-RAY DIFFRACTION AUTHOR A.SERRIS,F.A.REY,P.GUARDADO-CALVO REVDAT 3 24-JAN-24 6Y68 1 REMARK REVDAT 2 28-OCT-20 6Y68 1 JRNL REVDAT 1 14-OCT-20 6Y68 0 JRNL AUTH A.SERRIS,R.STASS,E.A.BIGNON,N.A.MUENA,J.C.MANUGUERRA, JRNL AUTH 2 R.K.JANGRA,S.LI,K.CHANDRAN,N.D.TISCHLER,J.T.HUISKONEN, JRNL AUTH 3 F.A.REY,P.GUARDADO-CALVO JRNL TITL THE HANTAVIRUS SURFACE GLYCOPROTEIN LATTICE AND ITS FUSION JRNL TITL 2 CONTROL MECHANISM. JRNL REF CELL V. 183 442 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32937107 JRNL DOI 10.1016/J.CELL.2020.08.023 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8280 - 6.6121 1.00 2775 110 0.2158 0.2739 REMARK 3 2 6.6121 - 5.2520 1.00 2754 129 0.1804 0.2225 REMARK 3 3 5.2520 - 4.5892 1.00 2716 149 0.1348 0.1469 REMARK 3 4 4.5892 - 4.1701 1.00 2788 114 0.1457 0.1934 REMARK 3 5 4.1701 - 3.8715 1.00 2707 147 0.1551 0.2158 REMARK 3 6 3.8715 - 3.6434 1.00 2724 133 0.1732 0.2278 REMARK 3 7 3.6434 - 3.4610 1.00 2724 128 0.1791 0.2017 REMARK 3 8 3.4610 - 3.3105 1.00 2735 162 0.1961 0.2366 REMARK 3 9 3.3105 - 3.1831 1.00 2729 146 0.2077 0.2589 REMARK 3 10 3.1831 - 3.0733 1.00 2687 173 0.2157 0.2337 REMARK 3 11 3.0733 - 2.9772 1.00 2745 128 0.2349 0.2522 REMARK 3 12 2.9772 - 2.8921 1.00 2726 126 0.2286 0.2895 REMARK 3 13 2.8921 - 2.8160 1.00 2767 116 0.2484 0.2809 REMARK 3 14 2.8160 - 2.7473 1.00 2695 155 0.2592 0.2879 REMARK 3 15 2.7473 - 2.6849 1.00 2723 151 0.2565 0.2735 REMARK 3 16 2.6849 - 2.6278 1.00 2680 183 0.2693 0.2927 REMARK 3 17 2.6278 - 2.5752 1.00 2723 155 0.2717 0.3358 REMARK 3 18 2.5752 - 2.5266 1.00 2736 115 0.2908 0.3167 REMARK 3 19 2.5266 - 2.4815 1.00 2718 160 0.3045 0.3294 REMARK 3 20 2.4815 - 2.4394 1.00 2742 106 0.3255 0.3720 REMARK 3 21 2.4394 - 2.4001 1.00 2798 128 0.3216 0.3363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 657:691) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0274 71.5750 161.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.4703 T22: 0.4370 REMARK 3 T33: 0.4667 T12: -0.0342 REMARK 3 T13: -0.0128 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.5709 L22: 2.0631 REMARK 3 L33: 1.7194 L12: 1.0120 REMARK 3 L13: -0.3796 L23: -0.4787 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.1934 S13: 0.0496 REMARK 3 S21: -0.2732 S22: -0.1064 S23: -0.1209 REMARK 3 S31: -0.0246 S32: 0.0188 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 692:704) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3710 72.9072 144.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.9915 T22: 1.0942 REMARK 3 T33: 0.8457 T12: 0.0837 REMARK 3 T13: 0.0945 T23: 0.1212 REMARK 3 L TENSOR REMARK 3 L11: 0.0271 L22: 0.0156 REMARK 3 L33: 0.0534 L12: 0.0185 REMARK 3 L13: -0.0315 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.9003 S13: -0.4112 REMARK 3 S21: -0.9536 S22: -0.0924 S23: -1.3913 REMARK 3 S31: -0.5598 S32: 1.4953 S33: 0.0012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 705:785) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0048 69.8084 220.7687 REMARK 3 T TENSOR REMARK 3 T11: 1.0505 T22: 0.9081 REMARK 3 T33: 0.5773 T12: -0.0639 REMARK 3 T13: 0.0582 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 0.7781 L22: 1.0768 REMARK 3 L33: 1.3198 L12: 0.3475 REMARK 3 L13: -0.3043 L23: 0.9099 REMARK 3 S TENSOR REMARK 3 S11: 0.1740 S12: -0.5964 S13: -0.1307 REMARK 3 S21: 0.8479 S22: -0.1093 S23: 0.0516 REMARK 3 S31: 0.5993 S32: -0.2580 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 786:868) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0561 71.9776 185.0734 REMARK 3 T TENSOR REMARK 3 T11: 0.4667 T22: 0.4513 REMARK 3 T33: 0.5686 T12: -0.0204 REMARK 3 T13: 0.0150 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9127 L22: 0.5490 REMARK 3 L33: 2.5387 L12: -0.1307 REMARK 3 L13: -0.0794 L23: -0.1755 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.2021 S13: -0.0351 REMARK 3 S21: 0.1028 S22: -0.0167 S23: 0.0835 REMARK 3 S31: 0.2152 S32: -0.1065 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 869:967) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2778 75.8243 200.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.6119 T22: 0.5871 REMARK 3 T33: 0.5805 T12: 0.0073 REMARK 3 T13: 0.0247 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9826 L22: 0.8031 REMARK 3 L33: 1.6532 L12: 0.1983 REMARK 3 L13: 0.0416 L23: 0.2203 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.4349 S13: 0.0426 REMARK 3 S21: 0.3695 S22: -0.0730 S23: 0.1051 REMARK 3 S31: 0.0954 S32: 0.1374 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 968:1069) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0770 51.5870 182.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.4632 T22: 0.4940 REMARK 3 T33: 0.6371 T12: -0.0160 REMARK 3 T13: 0.0089 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.9812 L22: 1.4942 REMARK 3 L33: 1.8359 L12: -0.3323 REMARK 3 L13: -0.9709 L23: 1.2134 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0340 S13: -0.1853 REMARK 3 S21: 0.0875 S22: -0.0395 S23: 0.1091 REMARK 3 S31: 0.1503 S32: -0.3397 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 2.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 5LJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 400, 0.1M CDCL2, 0.1M NA REMARK 280 -ACETATE 4.6, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.17400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.08122 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 168.79333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.17400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.08122 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 168.79333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.17400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.08122 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 168.79333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.17400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.08122 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 168.79333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.17400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.08122 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 168.79333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.17400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.08122 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.79333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.16244 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 337.58667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 52.16244 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 337.58667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 52.16244 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 337.58667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 52.16244 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 337.58667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 52.16244 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 337.58667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 52.16244 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 337.58667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 135.52200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 78.24366 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 156.48733 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1379 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 652 REMARK 465 THR A 653 REMARK 465 THR A 654 REMARK 465 GLN A 655 REMARK 465 VAL A 656 REMARK 465 GLY A 1070 REMARK 465 VAL A 1071 REMARK 465 ASN A 1072 REMARK 465 GLN A 1073 REMARK 465 ILE A 1074 REMARK 465 ASP A 1075 REMARK 465 SER A 1076 REMARK 465 ASP A 1077 REMARK 465 LYS A 1078 REMARK 465 VAL A 1079 REMARK 465 TYR A 1080 REMARK 465 ASP A 1081 REMARK 465 ASP A 1082 REMARK 465 GLY A 1083 REMARK 465 ALA A 1084 REMARK 465 PRO A 1085 REMARK 465 PRO A 1086 REMARK 465 CYS A 1087 REMARK 465 THR A 1088 REMARK 465 LEU A 1089 REMARK 465 LYS A 1090 REMARK 465 CYS A 1091 REMARK 465 TRP A 1092 REMARK 465 PHE A 1093 REMARK 465 THR A 1094 REMARK 465 LYS A 1095 REMARK 465 SER A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 TRP A 1099 REMARK 465 LEU A 1100 REMARK 465 TRP A 1101 REMARK 465 GLY A 1102 REMARK 465 ILE A 1103 REMARK 465 LEU A 1104 REMARK 465 ASN A 1105 REMARK 465 GLY A 1106 REMARK 465 ASN A 1107 REMARK 465 PRO A 1108 REMARK 465 PHE A 1109 REMARK 465 GLU A 1110 REMARK 465 ASP A 1111 REMARK 465 ASP A 1112 REMARK 465 ASP A 1113 REMARK 465 ASP A 1114 REMARK 465 LYS A 1115 REMARK 465 ALA A 1116 REMARK 465 GLY A 1117 REMARK 465 TRP A 1118 REMARK 465 SER A 1119 REMARK 465 HIS A 1120 REMARK 465 PRO A 1121 REMARK 465 GLN A 1122 REMARK 465 PHE A 1123 REMARK 465 GLU A 1124 REMARK 465 LYS A 1125 REMARK 465 GLY A 1126 REMARK 465 GLY A 1127 REMARK 465 GLY A 1128 REMARK 465 SER A 1129 REMARK 465 GLY A 1130 REMARK 465 GLY A 1131 REMARK 465 GLY A 1132 REMARK 465 SER A 1133 REMARK 465 GLY A 1134 REMARK 465 GLY A 1135 REMARK 465 GLY A 1136 REMARK 465 SER A 1137 REMARK 465 TRP A 1138 REMARK 465 SER A 1139 REMARK 465 HIS A 1140 REMARK 465 PRO A 1141 REMARK 465 GLN A 1142 REMARK 465 PHE A 1143 REMARK 465 GLU A 1144 REMARK 465 LYS A 1145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 701 O HOH A 1301 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 698 17.07 54.24 REMARK 500 LYS A 700 -55.03 70.46 REMARK 500 LYS A 744 4.54 -67.44 REMARK 500 GLU A 763 87.33 -156.84 REMARK 500 TRP A 766 -48.32 56.26 REMARK 500 ALA A 846 -1.11 79.25 REMARK 500 THR A 867 -59.17 -128.78 REMARK 500 ALA A 901 -0.11 63.50 REMARK 500 THR A 938 -109.40 48.72 REMARK 500 ASP A1013 -154.55 -118.33 REMARK 500 ASP A1050 -123.65 51.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 707 NE2 REMARK 620 2 ASP A 933 OD1 31.2 REMARK 620 3 ASP A 933 OD2 29.8 1.4 REMARK 620 4 HOH A1382 O 35.0 8.0 8.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 836 SD REMARK 620 2 THR A 839 OG1 173.1 REMARK 620 3 ASP A 952 OD2 83.6 90.1 REMARK 620 4 HOH A1371 O 94.5 91.2 122.6 REMARK 620 5 HOH A1375 O 88.9 90.8 110.9 126.5 REMARK 620 N 1 2 3 4 DBREF 6Y68 A 652 1107 UNP Q5MYC0 Q5MYC0_9VIRU 652 1107 SEQADV 6Y68 PRO A 1108 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 PHE A 1109 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLU A 1110 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 ASP A 1111 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 ASP A 1112 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 ASP A 1113 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 ASP A 1114 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 LYS A 1115 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 ALA A 1116 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1117 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 TRP A 1118 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 SER A 1119 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 HIS A 1120 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 PRO A 1121 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLN A 1122 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 PHE A 1123 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLU A 1124 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 LYS A 1125 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1126 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1127 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1128 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 SER A 1129 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1130 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1131 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1132 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 SER A 1133 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1134 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1135 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLY A 1136 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 SER A 1137 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 TRP A 1138 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 SER A 1139 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 HIS A 1140 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 PRO A 1141 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLN A 1142 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 PHE A 1143 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 GLU A 1144 UNP Q5MYC0 EXPRESSION TAG SEQADV 6Y68 LYS A 1145 UNP Q5MYC0 EXPRESSION TAG SEQRES 1 A 494 GLU THR THR GLN VAL GLU PRO GLY TRP SER ASP THR ALA SEQRES 2 A 494 HIS GLY VAL GLY GLU VAL PRO LEU LYS THR ASP LEU GLU SEQRES 3 A 494 LEU ASP PHE SER LEU PRO SER SER SER SER TYR SER TYR SEQRES 4 A 494 ARG ARG LYS LEU THR ASN PRO ALA ASN LYS GLU GLU SER SEQRES 5 A 494 ILE PRO PHE HIS PHE GLN MET ASP LYS GLN VAL ILE HIS SEQRES 6 A 494 ALA GLU VAL GLN VAL LEU GLY HIS TRP MET ASP ALA THR SEQRES 7 A 494 PHE ASN ILE LYS THR ALA PHE HIS CYS TYR GLY ALA CYS SEQRES 8 A 494 GLN LYS TYR SER TYR PRO TRP GLN THR ALA LYS CYS PHE SEQRES 9 A 494 PHE GLU LYS ASP TYR GLN TYR GLU ASN GLY TRP GLY CYS SEQRES 10 A 494 ASN PRO GLY ASP CYS PRO GLY VAL GLY THR GLY CYS THR SEQRES 11 A 494 ALA CYS GLY ILE TYR LEU ASP LYS LEU LYS SER VAL GLY SEQRES 12 A 494 LYS ALA TYR LYS ILE ILE SER LEU LYS TYR SER ARG LYS SEQRES 13 A 494 VAL CYS ILE GLN LEU GLY THR GLU GLN THR CYS LYS HIS SEQRES 14 A 494 ILE ASP ALA ASN ASP CYS LEU VAL THR PRO SER VAL LYS SEQRES 15 A 494 VAL CYS MET VAL GLY THR VAL SER LYS LEU GLN PRO ALA SEQRES 16 A 494 ASP THR ILE LEU PHE LEU GLY PRO LEU GLU GLN GLY GLY SEQRES 17 A 494 ILE ILE LEU LYS GLN TRP CYS THR THR SER CYS THR PHE SEQRES 18 A 494 GLY ASP PRO GLY ASP ILE MET SER THR THR ALA GLY MET SEQRES 19 A 494 ARG CYS PRO GLU HIS THR GLY SER PHE ARG LYS ILE CYS SEQRES 20 A 494 ALA PHE ALA THR THR PRO VAL CYS GLU TYR GLN GLY ASN SEQRES 21 A 494 THR ILE SER GLY TYR LYS ARG MET MET ALA THR LYS ASP SEQRES 22 A 494 SER PHE GLN SER PHE ASN LEU THR ASP PRO HIS LEU THR SEQRES 23 A 494 THR ASN LYS LEU GLU TRP ILE ASP PRO ASP GLY ASN THR SEQRES 24 A 494 ARG ASP HIS VAL ASN LEU VAL LEU ASN ARG ASP VAL SER SEQRES 25 A 494 PHE GLN ASP LEU SER ASP ASN PRO CYS LYS VAL ASP LEU SEQRES 26 A 494 HIS THR GLN SER ILE GLU GLY ALA TRP GLY SER GLY VAL SEQRES 27 A 494 GLY PHE THR LEU THR CYS THR VAL SER LEU THR GLU CYS SEQRES 28 A 494 PRO SER PHE MET THR SER ILE LYS ALA CYS ASP MET ALA SEQRES 29 A 494 MET CYS TYR GLY SER THR VAL THR ASN LEU ALA ARG GLY SEQRES 30 A 494 SER ASN THR VAL LYS VAL VAL GLY LYS GLY GLY HIS SER SEQRES 31 A 494 GLY SER ALA PHE LYS CYS CYS HIS ASP THR ASP CYS SER SEQRES 32 A 494 THR GLU GLY LEU ALA ALA SER ALA PRO HIS LEU GLU ARG SEQRES 33 A 494 VAL THR GLY VAL ASN GLN ILE ASP SER ASP LYS VAL TYR SEQRES 34 A 494 ASP ASP GLY ALA PRO PRO CYS THR LEU LYS CYS TRP PHE SEQRES 35 A 494 THR LYS SER GLY GLU TRP LEU TRP GLY ILE LEU ASN GLY SEQRES 36 A 494 ASN PRO PHE GLU ASP ASP ASP ASP LYS ALA GLY TRP SER SEQRES 37 A 494 HIS PRO GLN PHE GLU LYS GLY GLY GLY SER GLY GLY GLY SEQRES 38 A 494 SER GLY GLY GLY SER TRP SER HIS PRO GLN PHE GLU LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET CD A1205 1 HET CD A1206 1 HET CD A1207 1 HET CD A1208 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CD CADMIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 CD 4(CD 2+) FORMUL 7 HOH *83(H2 O) HELIX 1 AA1 VAL A 670 LEU A 672 5 3 HELIX 2 AA2 ALA A 741 TYR A 745 5 5 HELIX 3 AA3 TYR A 747 ALA A 752 5 6 HELIX 4 AA4 PRO A 854 GLY A 858 5 5 HELIX 5 AA5 SER A 914 ALA A 921 1 8 HELIX 6 AA6 THR A 922 PHE A 926 5 5 SHEET 1 A 4 TYR A 688 LEU A 694 0 SHEET 2 A 4 ILE A 704 MET A 710 -1 SHEET 3 A 4 SER A 805 LEU A 812 -1 SHEET 4 A 4 GLU A 815 ASP A 822 -1 SHEET 1 B 7 HIS A 935 THR A 937 0 SHEET 2 B 7 LYS A 940 TRP A 943 -1 SHEET 3 B 7 VAL A 714 VAL A 721 -1 SHEET 4 B 7 LYS A 795 SER A 805 -1 SHEET 5 B 7 THR A 848 PHE A 851 -1 SHEET 6 B 7 GLY A 859 LEU A 862 -1 SHEET 7 B 7 GLN A 927 PHE A 929 -1 SHEET 1 C 3 THR A 729 HIS A 737 0 SHEET 2 C 3 CYS A 780 ASP A 788 -1 SHEET 3 C 3 CYS A 754 GLN A 761 -1 SHEET 1 D 4 CYS A 826 VAL A 828 0 SHEET 2 D 4 VAL A 832 VAL A 837 -1 SHEET 3 D 4 ARG A 951 ASN A 959 -1 SHEET 4 D 4 THR A 674 PRO A 683 -1 SHEET 1 E 2 MET A 879 THR A 881 0 SHEET 2 E 2 GLY A 884 ARG A 886 -1 SHEET 1 F 2 SER A 893 ILE A 897 0 SHEET 2 F 2 VAL A 905 GLN A 909 -1 SHEET 1 G 3 GLY A1028 GLY A1036 0 SHEET 2 G 3 PHE A 991 THR A1000 -1 SHEET 3 G 3 LYS A 973 GLY A 983 -1 SHEET 1 H 3 SER A1020 ALA A1026 0 SHEET 2 H 3 SER A1004 CYS A1012 -1 SHEET 3 H 3 LYS A1046 CYS A1048 -1 SHEET 1 I 2 GLY A 723 ASP A 727 0 SHEET 2 I 2 LYS A 791 ALA A 796 -1 SSBOND 1 CYS A 738 CYS A 773 1555 1555 2.03 SSBOND 2 CYS A 742 CYS A 780 1555 1555 2.03 SSBOND 3 CYS A 754 CYS A 887 1555 1555 2.05 SSBOND 4 CYS A 768 CYS A 898 1555 1555 2.03 SSBOND 5 CYS A 783 CYS A 906 1555 1555 2.03 SSBOND 6 CYS A 809 CYS A 818 1555 1555 2.04 SSBOND 7 CYS A 826 CYS A 835 1555 1555 2.05 SSBOND 8 CYS A 866 CYS A 870 1555 1555 2.05 SSBOND 9 CYS A 972 CYS A 1002 1555 1555 2.04 SSBOND 10 CYS A 995 CYS A 1047 1555 1555 2.03 SSBOND 11 CYS A 1012 CYS A 1017 1555 1555 2.05 SSBOND 12 CYS A 1048 CYS A 1053 1555 1555 2.05 LINK ND2 ASN A 930 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK NE2 HIS A 707 CD CD A1205 1555 18655 2.55 LINK O THR A 814 CD CD A1206 1555 1555 2.58 LINK SD MET A 836 CD CD A1207 1555 1555 2.91 LINK OG1 THR A 839 CD CD A1207 1555 1555 2.62 LINK OD1 ASP A 933 CD CD A1205 1555 1555 2.60 LINK OD2 ASP A 933 CD CD A1205 1555 1555 2.63 LINK OD2 ASP A 952 CD CD A1207 1555 1555 2.57 LINK CD CD A1205 O HOH A1382 1555 18655 2.52 LINK CD CD A1207 O HOH A1371 1555 1555 2.56 LINK CD CD A1207 O HOH A1375 1555 1555 2.51 CISPEP 1 ASN A 696 PRO A 697 0 6.36 CRYST1 90.348 90.348 506.380 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011068 0.006390 0.000000 0.00000 SCALE2 0.000000 0.012781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001975 0.00000