HEADER RNA BINDING PROTEIN 26-FEB-20 6Y6M TITLE SOLUTION STRUCTURE OF COLD-SHOCK DOMAIN 1 AND 2 OF DROSOPHILA UPSTREAM TITLE 2 OF N-RAS (UNR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM OF N-RAS, ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GADDEE: RESIDUES FROM CLEAVAGE SITE/CLONING OVERHANG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: UNR, BCDNA:LD13080, CR32028, DMEL\CG7015, DUNR, MRE30, UNR, SOURCE 6 UNR, CG7015, DMEL_CG7015; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CSD, NCCSD, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.SIMON,N.M.HOLLMANN,J.HENNIG REVDAT 3 15-MAY-24 6Y6M 1 REMARK REVDAT 2 10-FEB-21 6Y6M 1 JRNL REVDAT 1 29-JUL-20 6Y6M 0 JRNL AUTH N.M.HOLLMANN,P.K.A.JAGTAP,P.MASIEWICZ,T.GUITART,B.SIMON, JRNL AUTH 2 J.PROVAZNIK,F.STEIN,P.HABERKANT,L.J.SWEETAPPLE,L.VILLACORTA, JRNL AUTH 3 D.MOOIJMAN,V.BENES,M.M.SAVITSKI,F.GEBAUER,J.HENNIG JRNL TITL PSEUDO-RNA-BINDING DOMAINS MEDIATE RNA STRUCTURE SPECIFICITY JRNL TITL 2 IN UPSTREAM OF N-RAS. JRNL REF CELL REP V. 32 07930 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32697992 JRNL DOI 10.1016/J.CELREP.2020.107930 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106988. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM CHLORIDE, 20 MM REMARK 210 SODIUM PHOSPHATE, 10 MM DTT, 0.3 REMARK 210 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 0.36 MM RNA, 95% H2O/5% REMARK 210 D2O; 50 MM SODIUM CHLORIDE, 20 REMARK 210 MM SODIUM PHOSPHATE, 10 MM DTT, REMARK 210 0.3 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 0.36 MM RNA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 2D REMARK 210 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW, CARA, NMRPIPE, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 28 49.81 -73.03 REMARK 500 1 SER A 67 -150.90 -79.45 REMARK 500 1 VAL A 69 99.79 55.88 REMARK 500 1 ALA A 73 72.26 60.12 REMARK 500 1 SER A 79 -2.30 66.53 REMARK 500 1 THR A 93 -154.07 -140.75 REMARK 500 1 SER A 95 -163.91 -73.26 REMARK 500 1 ASN A 97 -45.29 -155.15 REMARK 500 1 LEU A 100 2.16 59.65 REMARK 500 2 ALA A 2 -75.33 -120.10 REMARK 500 2 SER A 18 -23.07 74.62 REMARK 500 2 GLN A 28 20.06 -77.62 REMARK 500 2 SER A 67 -150.04 -73.75 REMARK 500 2 VAL A 69 89.38 50.95 REMARK 500 2 GLU A 80 116.04 -177.55 REMARK 500 2 GLU A 81 64.36 66.34 REMARK 500 2 ASN A 97 -20.45 74.44 REMARK 500 2 LEU A 100 -75.47 -158.11 REMARK 500 3 ARG A 27 -159.37 -151.20 REMARK 500 3 VAL A 69 96.20 30.02 REMARK 500 3 ILE A 72 -70.30 -55.92 REMARK 500 3 ALA A 73 99.41 -165.06 REMARK 500 3 SER A 79 52.49 -95.50 REMARK 500 3 GLU A 80 -68.20 -120.47 REMARK 500 3 ASN A 97 0.90 56.45 REMARK 500 3 SER A 102 97.08 -65.80 REMARK 500 4 SER A 18 -35.86 78.39 REMARK 500 4 SER A 67 -150.16 -69.69 REMARK 500 4 VAL A 69 96.20 55.13 REMARK 500 4 VAL A 76 103.41 -58.33 REMARK 500 4 GLU A 80 -49.39 -159.39 REMARK 500 4 ARG A 82 71.41 -166.83 REMARK 500 4 ASN A 97 -34.01 75.23 REMARK 500 4 SER A 102 91.60 -52.83 REMARK 500 4 GLN A 147 13.91 -69.19 REMARK 500 5 ARG A 27 -158.97 -164.59 REMARK 500 5 SER A 67 -157.13 -70.00 REMARK 500 5 GLN A 68 27.86 -75.68 REMARK 500 5 VAL A 69 101.97 21.31 REMARK 500 5 SER A 79 60.53 -114.06 REMARK 500 5 ASP A 94 -82.97 -80.49 REMARK 500 5 ALA A 96 40.58 -76.85 REMARK 500 5 ASN A 97 -25.10 -145.39 REMARK 500 5 GLN A 163 81.27 61.35 REMARK 500 6 GLU A 5 -71.57 -90.96 REMARK 500 6 SER A 18 -22.68 76.24 REMARK 500 6 ARG A 27 -160.82 -163.16 REMARK 500 6 GLN A 37 40.10 -106.88 REMARK 500 6 SER A 67 -166.30 -65.30 REMARK 500 6 VAL A 69 92.67 32.87 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34493 RELATED DB: BMRB REMARK 900 DROSOPHILA UNR CSD78 DBREF 6Y6M A 7 165 UNP Q9VSK3 Q9VSK3_DROME 186 344 SEQADV 6Y6M GLY A 1 UNP Q9VSK3 EXPRESSION TAG SEQADV 6Y6M ALA A 2 UNP Q9VSK3 EXPRESSION TAG SEQADV 6Y6M ASP A 3 UNP Q9VSK3 EXPRESSION TAG SEQADV 6Y6M ASP A 4 UNP Q9VSK3 EXPRESSION TAG SEQADV 6Y6M GLU A 5 UNP Q9VSK3 EXPRESSION TAG SEQADV 6Y6M GLU A 6 UNP Q9VSK3 EXPRESSION TAG SEQRES 1 A 165 GLY ALA ASP ASP GLU GLU ARG GLU THR GLY ILE ILE GLU SEQRES 2 A 165 LYS LEU LEU HIS SER TYR GLY PHE ILE GLN CYS CYS GLU SEQRES 3 A 165 ARG GLN ALA ARG LEU PHE PHE HIS PHE SER GLN PHE SER SEQRES 4 A 165 GLY ASN ILE ASP HIS LEU LYS ILE GLY ASP PRO VAL GLU SEQRES 5 A 165 PHE GLU MET THR TYR ASP ARG ARG THR GLY LYS PRO ILE SEQRES 6 A 165 ALA SER GLN VAL SER LYS ILE ALA PRO GLU VAL VAL LEU SEQRES 7 A 165 SER GLU GLU ARG VAL THR GLY THR VAL THR THR GLU LEU SEQRES 8 A 165 ARG THR ASP SER ALA ASN ASN VAL LEU ASN SER SER GLU SEQRES 9 A 165 THR THR GLY ARG ILE SER TYR GLU ASN ARG GLY GLU CYS SEQRES 10 A 165 PHE PHE LEU PRO TYR THR LYS ASP ASP VAL GLU GLY ASN SEQRES 11 A 165 VAL ASN LEU ARG ALA GLY ASP LYS VAL SER PHE GLN ILE SEQRES 12 A 165 ALA THR ASN GLN ARG GLY ASN LEU GLY ALA CYS HIS ILE SEQRES 13 A 165 ARG LEU GLU ASN PRO ALA GLN PRO VAL HELIX 1 AA1 HIS A 34 PHE A 38 5 5 HELIX 2 AA2 ASN A 41 LEU A 45 5 5 HELIX 3 AA3 THR A 123 VAL A 127 5 5 SHEET 1 AA1 5 LEU A 31 PHE A 33 0 SHEET 2 AA1 5 TYR A 19 GLN A 23 -1 N ILE A 22 O LEU A 31 SHEET 3 AA1 5 ARG A 7 LEU A 16 -1 N ILE A 11 O GLN A 23 SHEET 4 AA1 5 ASP A 49 ASP A 58 -1 O PHE A 53 N GLU A 8 SHEET 5 AA1 5 LYS A 63 ALA A 66 -1 O ILE A 65 N THR A 56 SHEET 1 AA2 5 LEU A 31 PHE A 33 0 SHEET 2 AA2 5 TYR A 19 GLN A 23 -1 N ILE A 22 O LEU A 31 SHEET 3 AA2 5 ARG A 7 LEU A 16 -1 N ILE A 11 O GLN A 23 SHEET 4 AA2 5 ASP A 49 ASP A 58 -1 O PHE A 53 N GLU A 8 SHEET 5 AA2 5 SER A 70 LYS A 71 -1 O SER A 70 N GLU A 52 SHEET 1 AA3 5 GLU A 116 TYR A 122 0 SHEET 2 AA3 5 GLY A 107 ASN A 113 -1 N GLY A 107 O TYR A 122 SHEET 3 AA3 5 ARG A 82 THR A 89 -1 N THR A 86 O SER A 110 SHEET 4 AA3 5 LYS A 138 GLN A 142 -1 O VAL A 139 N GLY A 85 SHEET 5 AA3 5 CYS A 154 ASN A 160 -1 O CYS A 154 N GLN A 142 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1