HEADER HYDROLASE 27-FEB-20 6Y6S TITLE MOUSE GALACTOCEREBROSIDASE COMPLEXED WITH GALACTO-NOEUROSTEGINE GNS AT TITLE 2 PH 6.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOCEREBROSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GALCERASE,GALACTOCEREBROSIDE BETA-GALACTOSIDASE, COMPND 5 GALACTOSYLCERAMIDASE,GALACTOSYLCERAMIDE BETA-GALACTOSIDASE; COMPND 6 EC: 3.2.1.46; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GLYCOSYLATED PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GALC; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEANE,J.MCLOUGHLIN REVDAT 3 24-JAN-24 6Y6S 1 REMARK REVDAT 2 03-FEB-21 6Y6S 1 JRNL REVDAT 1 13-JAN-21 6Y6S 0 JRNL AUTH A.VIUFF,S.SALAMONE,J.MCLOUGHLIN,J.E.DEANE,H.H.JENSEN JRNL TITL THE BICYCLIC FORM OF GALACTO -NOEUROSTEGINE IS A POTENT JRNL TITL 2 INHIBITOR OF BETA-GALACTOCEREBROSIDASE. JRNL REF ACS MED.CHEM.LETT. V. 12 56 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33488964 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00377 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0700 - 5.6000 1.00 2737 144 0.1561 0.1796 REMARK 3 2 5.6000 - 4.4500 1.00 2695 134 0.1195 0.1442 REMARK 3 3 4.4500 - 3.8800 1.00 2668 142 0.1231 0.1339 REMARK 3 4 3.8800 - 3.5300 1.00 2654 145 0.1440 0.1788 REMARK 3 5 3.5300 - 3.2800 1.00 2669 133 0.1678 0.2128 REMARK 3 6 3.2800 - 3.0800 1.00 2644 148 0.1865 0.2227 REMARK 3 7 3.0800 - 2.9300 1.00 2664 124 0.1792 0.2292 REMARK 3 8 2.9300 - 2.8000 1.00 2648 134 0.1789 0.2274 REMARK 3 9 2.8000 - 2.6900 1.00 2641 151 0.1740 0.2438 REMARK 3 10 2.6900 - 2.6000 1.00 2624 159 0.1745 0.2412 REMARK 3 11 2.6000 - 2.5200 1.00 2646 132 0.1843 0.2290 REMARK 3 12 2.5200 - 2.4500 1.00 2632 150 0.1797 0.2528 REMARK 3 13 2.4500 - 2.3800 1.00 2593 169 0.1929 0.2364 REMARK 3 14 2.3800 - 2.3200 1.00 2629 147 0.2076 0.2523 REMARK 3 15 2.3200 - 2.2700 1.00 2637 140 0.2196 0.2716 REMARK 3 16 2.2700 - 2.2200 1.00 2634 155 0.2280 0.2889 REMARK 3 17 2.2200 - 2.1800 1.00 2632 136 0.2333 0.2660 REMARK 3 18 2.1800 - 2.1400 1.00 2659 119 0.2565 0.2828 REMARK 3 19 2.1400 - 2.1000 0.99 2628 125 0.2855 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5403 REMARK 3 ANGLE : 0.842 7377 REMARK 3 CHIRALITY : 0.051 796 REMARK 3 PLANARITY : 0.005 929 REMARK 3 DIHEDRAL : 10.492 3042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 25:40 OR RESSEQ 338:452) REMARK 3 ORIGIN FOR THE GROUP (A): 89.8926 109.6725 1.4888 REMARK 3 T TENSOR REMARK 3 T11: 0.7909 T22: 0.9475 REMARK 3 T33: 0.5788 T12: -0.4350 REMARK 3 T13: 0.1590 T23: 0.1489 REMARK 3 L TENSOR REMARK 3 L11: 1.9602 L22: 1.6560 REMARK 3 L33: 0.1388 L12: 0.7245 REMARK 3 L13: -0.4118 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: 0.4724 S13: 0.3989 REMARK 3 S21: -0.5122 S22: -0.0498 S23: -0.5292 REMARK 3 S31: -0.4199 S32: 0.6914 S33: 0.0075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 41:337 REMARK 3 ORIGIN FOR THE GROUP (A): 74.4837 99.0214 22.2927 REMARK 3 T TENSOR REMARK 3 T11: 0.2896 T22: 0.4028 REMARK 3 T33: 0.3427 T12: -0.1772 REMARK 3 T13: -0.0045 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.7619 L22: 0.9418 REMARK 3 L33: 1.6052 L12: -0.2450 REMARK 3 L13: 0.0271 L23: 0.0700 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0582 S13: 0.1235 REMARK 3 S21: -0.0506 S22: 0.0077 S23: -0.1667 REMARK 3 S31: -0.2997 S32: 0.4562 S33: -0.0260 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 453:471 REMARK 3 ORIGIN FOR THE GROUP (A): 98.0288 104.6609 27.0837 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.9073 REMARK 3 T33: 0.6792 T12: -0.4429 REMARK 3 T13: -0.0328 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.1154 L22: 0.0982 REMARK 3 L33: 0.0178 L12: 0.0940 REMARK 3 L13: 0.0202 L23: 0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0383 S13: 0.1982 REMARK 3 S21: -0.0910 S22: 0.0580 S23: -0.3483 REMARK 3 S31: -0.1961 S32: 0.3109 S33: 0.1501 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 472:668 REMARK 3 ORIGIN FOR THE GROUP (A): 82.5993 77.4257 43.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.5133 REMARK 3 T33: 0.3343 T12: -0.0295 REMARK 3 T13: -0.1004 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.3556 L22: 2.1627 REMARK 3 L33: 1.8266 L12: -0.1870 REMARK 3 L13: 0.4663 L23: -0.5969 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.1194 S13: -0.0606 REMARK 3 S21: 0.2497 S22: 0.0174 S23: -0.2161 REMARK 3 S31: 0.1756 S32: 0.4941 S33: -0.0942 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292107004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 124.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3ZR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6.8), AND 34% WT/VOL POLYETHYLENE GLYCOL 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 124.36050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.79957 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.77533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 124.36050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 71.79957 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.77533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 124.36050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 71.79957 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.77533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 124.36050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 71.79957 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.77533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 124.36050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 71.79957 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.77533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 124.36050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 71.79957 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.77533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 143.59914 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.55067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 143.59914 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.55067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 143.59914 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 51.55067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 143.59914 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.55067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 143.59914 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 51.55067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 143.59914 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 51.55067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 ILE A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 THR A 416 REMARK 465 PRO A 417 REMARK 465 GLN A 418 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 GLU A 505 CG CD OE1 OE2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 665 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG B 1 O5 NAG B 2 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 75 -71.45 -145.95 REMARK 500 ASP A 89 -4.19 79.14 REMARK 500 THR A 93 -42.78 156.45 REMARK 500 ILE A 179 -87.21 -107.69 REMARK 500 LEU A 202 42.60 -106.87 REMARK 500 ASN A 212 -121.31 -145.39 REMARK 500 THR A 241 -2.04 75.99 REMARK 500 THR A 243 -161.91 -117.13 REMARK 500 PHE A 260 -103.68 75.63 REMARK 500 ASN A 264 34.82 -82.93 REMARK 500 SER A 265 -169.18 -71.88 REMARK 500 SER A 296 53.28 -110.57 REMARK 500 SER A 306 41.76 -108.23 REMARK 500 SER A 376 20.66 -150.06 REMARK 500 GLU A 443 -153.22 -106.01 REMARK 500 PRO A 465 154.39 -49.34 REMARK 500 ASN A 490 -13.53 75.82 REMARK 500 GLU A 505 37.93 -78.51 REMARK 500 ARG A 555 -52.81 70.10 REMARK 500 THR A 653 -161.11 -123.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 709 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 477 O REMARK 620 2 ASN A 479 OD1 77.2 REMARK 620 3 PHE A 511 O 94.9 93.6 REMARK 620 4 ASP A 660 OD1 85.4 161.4 94.3 REMARK 620 5 ASP A 660 OD2 130.6 151.8 88.5 45.3 REMARK 620 6 HOH A 929 O 101.1 83.6 162.7 93.6 86.1 REMARK 620 7 HOH A 934 O 168.3 91.9 90.0 104.9 60.0 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 710 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 538 NE2 REMARK 620 2 HIS A 644 NE2 92.8 REMARK 620 N 1 DBREF 6Y6S A 25 668 UNP P54818 GALC_MOUSE 41 684 SEQADV 6Y6S HIS A 15 UNP P54818 EXPRESSION TAG SEQADV 6Y6S HIS A 16 UNP P54818 EXPRESSION TAG SEQADV 6Y6S HIS A 17 UNP P54818 EXPRESSION TAG SEQADV 6Y6S HIS A 18 UNP P54818 EXPRESSION TAG SEQADV 6Y6S HIS A 19 UNP P54818 EXPRESSION TAG SEQADV 6Y6S HIS A 20 UNP P54818 EXPRESSION TAG SEQADV 6Y6S ILE A 21 UNP P54818 EXPRESSION TAG SEQADV 6Y6S GLU A 22 UNP P54818 EXPRESSION TAG SEQADV 6Y6S GLY A 23 UNP P54818 EXPRESSION TAG SEQADV 6Y6S ARG A 24 UNP P54818 EXPRESSION TAG SEQRES 1 A 654 HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG GLY ALA TYR SEQRES 2 A 654 VAL LEU ASP ASP SER ASP GLY LEU GLY ARG GLU PHE ASP SEQRES 3 A 654 GLY ILE GLY ALA VAL SER GLY GLY GLY ALA THR SER ARG SEQRES 4 A 654 LEU LEU VAL ASN TYR PRO GLU PRO TYR ARG SER GLU ILE SEQRES 5 A 654 LEU ASP TYR LEU PHE LYS PRO ASN PHE GLY ALA SER LEU SEQRES 6 A 654 HIS ILE LEU LYS VAL GLU ILE GLY GLY ASP GLY GLN THR SEQRES 7 A 654 THR ASP GLY THR GLU PRO SER HIS MET HIS TYR GLU LEU SEQRES 8 A 654 ASP GLU ASN TYR PHE ARG GLY TYR GLU TRP TRP LEU MET SEQRES 9 A 654 LYS GLU ALA LYS LYS ARG ASN PRO ASP ILE ILE LEU MET SEQRES 10 A 654 GLY LEU PRO TRP SER PHE PRO GLY TRP LEU GLY LYS GLY SEQRES 11 A 654 PHE SER TRP PRO TYR VAL ASN LEU GLN LEU THR ALA TYR SEQRES 12 A 654 TYR VAL VAL ARG TRP ILE LEU GLY ALA LYS HIS TYR HIS SEQRES 13 A 654 ASP LEU ASP ILE ASP TYR ILE GLY ILE TRP ASN GLU ARG SEQRES 14 A 654 PRO PHE ASP ALA ASN TYR ILE LYS GLU LEU ARG LYS MET SEQRES 15 A 654 LEU ASP TYR GLN GLY LEU GLN ARG VAL ARG ILE ILE ALA SEQRES 16 A 654 SER ASP ASN LEU TRP GLU PRO ILE SER SER SER LEU LEU SEQRES 17 A 654 LEU ASP GLN GLU LEU TRP LYS VAL VAL ASP VAL ILE GLY SEQRES 18 A 654 ALA HIS TYR PRO GLY THR TYR THR VAL TRP ASN ALA LYS SEQRES 19 A 654 MET SER GLY LYS LYS LEU TRP SER SER GLU ASP PHE SER SEQRES 20 A 654 THR ILE ASN SER ASN VAL GLY ALA GLY CYS TRP SER ARG SEQRES 21 A 654 ILE LEU ASN GLN ASN TYR ILE ASN GLY ASN MET THR SER SEQRES 22 A 654 THR ILE ALA TRP ASN LEU VAL ALA SER TYR TYR GLU GLU SEQRES 23 A 654 LEU PRO TYR GLY ARG SER GLY LEU MET THR ALA GLN GLU SEQRES 24 A 654 PRO TRP SER GLY HIS TYR VAL VAL ALA SER PRO ILE TRP SEQRES 25 A 654 VAL SER ALA HIS THR THR GLN PHE THR GLN PRO GLY TRP SEQRES 26 A 654 TYR TYR LEU LYS THR VAL GLY HIS LEU GLU LYS GLY GLY SEQRES 27 A 654 SER TYR VAL ALA LEU THR ASP GLY LEU GLY ASN LEU THR SEQRES 28 A 654 ILE ILE ILE GLU THR MET SER HIS GLN HIS SER MET CYS SEQRES 29 A 654 ILE ARG PRO TYR LEU PRO TYR TYR ASN VAL SER HIS GLN SEQRES 30 A 654 LEU ALA THR PHE THR LEU LYS GLY SER LEU ARG GLU ILE SEQRES 31 A 654 GLN GLU LEU GLN VAL TRP TYR THR LYS LEU GLY THR PRO SEQRES 32 A 654 GLN GLN ARG LEU HIS PHE LYS GLN LEU ASP THR LEU TRP SEQRES 33 A 654 LEU LEU ASP GLY SER GLY SER PHE THR LEU GLU LEU GLU SEQRES 34 A 654 GLU ASP GLU ILE PHE THR LEU THR THR LEU THR THR GLY SEQRES 35 A 654 ARG LYS GLY SER TYR PRO PRO PRO PRO SER SER LYS PRO SEQRES 36 A 654 PHE PRO THR ASN TYR LYS ASP ASP PHE ASN VAL GLU TYR SEQRES 37 A 654 PRO LEU PHE SER GLU ALA PRO ASN PHE ALA ASP GLN THR SEQRES 38 A 654 GLY VAL PHE GLU TYR TYR MET ASN ASN GLU ASP ARG GLU SEQRES 39 A 654 HIS ARG PHE THR LEU ARG GLN VAL LEU ASN GLN ARG PRO SEQRES 40 A 654 ILE THR TRP ALA ALA ASP ALA SER SER THR ILE SER VAL SEQRES 41 A 654 ILE GLY ASP HIS HIS TRP THR ASN MET THR VAL GLN CYS SEQRES 42 A 654 ASP VAL TYR ILE GLU THR PRO ARG SER GLY GLY VAL PHE SEQRES 43 A 654 ILE ALA GLY ARG VAL ASN LYS GLY GLY ILE LEU ILE ARG SEQRES 44 A 654 SER ALA THR GLY VAL PHE PHE TRP ILE PHE ALA ASN GLY SEQRES 45 A 654 SER TYR ARG VAL THR ALA ASP LEU GLY GLY TRP ILE THR SEQRES 46 A 654 TYR ALA SER GLY HIS ALA ASP VAL THR ALA LYS ARG TRP SEQRES 47 A 654 TYR THR LEU THR LEU GLY ILE LYS GLY TYR PHE ALA PHE SEQRES 48 A 654 GLY MET LEU ASN GLY THR ILE LEU TRP LYS ASN VAL ARG SEQRES 49 A 654 VAL LYS TYR PRO GLY HIS GLY TRP ALA ALA ILE GLY THR SEQRES 50 A 654 HIS THR PHE GLU PHE ALA GLN PHE ASP ASN PHE ARG VAL SEQRES 51 A 654 GLU ALA ALA ARG HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET ODW A 701 13 HET NAG A 708 14 HET CA A 709 1 HET NI A 710 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ODW (1~{R},2~{S},3~{S},4~{R},5~{R})-4-(HYDROXYMETHYL)-8- HETNAM 2 ODW AZABICYCLO[3.2.1]OCTANE-1,2,3-TRIOL HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN ODW GALACTO-NOEUROSTEGINE; GNS FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 5 ODW C8 H15 N O4 FORMUL 7 CA CA 2+ FORMUL 8 NI NI 2+ FORMUL 9 HOH *267(H2 O) HELIX 1 AA1 PRO A 61 LYS A 72 1 12 HELIX 2 AA2 TYR A 113 ASN A 125 1 13 HELIX 3 AA3 PRO A 138 LYS A 143 5 6 HELIX 4 AA4 ASN A 151 ASP A 171 1 21 HELIX 5 AA5 ASP A 186 GLN A 200 1 15 HELIX 6 AA6 PRO A 216 ASP A 224 1 9 HELIX 7 AA7 ASP A 224 VAL A 231 1 8 HELIX 8 AA8 VAL A 244 GLY A 251 1 8 HELIX 9 AA9 SER A 265 ASN A 284 1 20 HELIX 10 AB1 ALA A 322 GLN A 333 1 12 HELIX 11 AB2 SER A 372 SER A 376 5 5 HELIX 12 AB3 GLY A 399 ILE A 404 5 6 HELIX 13 AB4 GLY A 568 SER A 574 5 7 SHEET 1 AA1 3 ALA A 26 LEU A 29 0 SHEET 2 AA1 3 GLN A 391 LEU A 397 1 O THR A 396 N LEU A 29 SHEET 3 AA1 3 SER A 437 LEU A 442 -1 O PHE A 438 N PHE A 395 SHEET 1 AA2 4 LEU A 35 GLU A 38 0 SHEET 2 AA2 4 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36 SHEET 3 AA2 4 SER A 353 THR A 358 -1 O ALA A 356 N LEU A 342 SHEET 4 AA2 4 GLY A 346 HIS A 347 -1 N GLY A 346 O TYR A 354 SHEET 1 AA3 7 LEU A 35 GLU A 38 0 SHEET 2 AA3 7 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36 SHEET 3 AA3 7 SER A 353 THR A 358 -1 O ALA A 356 N LEU A 342 SHEET 4 AA3 7 LEU A 364 GLU A 369 -1 O THR A 365 N LEU A 357 SHEET 5 AA3 7 GLU A 446 THR A 451 -1 O LEU A 450 N ILE A 366 SHEET 6 AA3 7 GLU A 406 LYS A 413 -1 N GLN A 408 O THR A 451 SHEET 7 AA3 7 LEU A 421 TRP A 430 -1 O LYS A 424 N TYR A 411 SHEET 1 AA4 9 GLY A 41 SER A 46 0 SHEET 2 AA4 9 ILE A 81 ILE A 86 1 O LYS A 83 N SER A 46 SHEET 3 AA4 9 ILE A 129 PRO A 134 1 O ILE A 129 N LEU A 82 SHEET 4 AA4 9 TYR A 176 ILE A 177 1 O TYR A 176 N GLY A 132 SHEET 5 AA4 9 ARG A 206 ASN A 212 1 O ARG A 206 N ILE A 177 SHEET 6 AA4 9 VAL A 233 HIS A 237 1 O HIS A 237 N ASN A 212 SHEET 7 AA4 9 LYS A 253 PHE A 260 1 O LYS A 253 N ILE A 234 SHEET 8 AA4 9 MET A 285 TRP A 291 1 O SER A 287 N SER A 256 SHEET 9 AA4 9 GLY A 41 SER A 46 1 N VAL A 45 O ALA A 290 SHEET 1 AA5 4 ASN A 473 ASP A 476 0 SHEET 2 AA5 4 ALA A 657 ALA A 667 -1 O VAL A 664 N TYR A 474 SHEET 3 AA5 4 PHE A 511 GLN A 515 -1 N LEU A 513 O PHE A 659 SHEET 4 AA5 4 PHE A 498 MET A 502 -1 N GLU A 499 O ARG A 514 SHEET 1 AA6 6 ASN A 473 ASP A 476 0 SHEET 2 AA6 6 ALA A 657 ALA A 667 -1 O VAL A 664 N TYR A 474 SHEET 3 AA6 6 ASN A 542 ILE A 551 -1 N ASN A 542 O ALA A 667 SHEET 4 AA6 6 TRP A 612 LYS A 620 -1 O LEU A 615 N CYS A 547 SHEET 5 AA6 6 PHE A 623 LEU A 628 -1 O PHE A 625 N GLY A 618 SHEET 6 AA6 6 THR A 631 ARG A 638 -1 O TRP A 634 N GLY A 626 SHEET 1 AA7 7 ALA A 492 THR A 495 0 SHEET 2 AA7 7 THR A 531 ILE A 535 -1 O ILE A 532 N GLN A 494 SHEET 3 AA7 7 TRP A 646 THR A 651 -1 O ALA A 647 N ILE A 535 SHEET 4 AA7 7 GLY A 558 VAL A 565 -1 N VAL A 565 O TRP A 646 SHEET 5 AA7 7 THR A 576 PHE A 583 -1 O PHE A 580 N ILE A 561 SHEET 6 AA7 7 SER A 587 ASP A 593 -1 O ARG A 589 N TRP A 581 SHEET 7 AA7 7 THR A 599 HIS A 604 -1 O TYR A 600 N VAL A 590 SSBOND 1 CYS A 271 CYS A 378 1555 1555 2.05 LINK ND2 ASN A 284 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 363 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 387 C1 NAG A 708 1555 1555 1.45 LINK ND2 ASN A 542 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O ASP A 477 CA CA A 709 1555 1555 2.35 LINK OD1 ASN A 479 CA CA A 709 1555 1555 2.49 LINK O PHE A 511 CA CA A 709 1555 1555 2.47 LINK NE2 HIS A 538 NI NI A 710 1555 1555 2.30 LINK NE2 HIS A 644 NI NI A 710 1555 1555 2.34 LINK OD1 ASP A 660 CA CA A 709 1555 1555 2.36 LINK OD2 ASP A 660 CA CA A 709 1555 1555 3.06 LINK CA CA A 709 O HOH A 929 1555 1555 2.76 LINK CA CA A 709 O HOH A 934 1555 1555 2.36 CISPEP 1 GLY A 48 GLY A 49 0 5.84 CISPEP 2 GLU A 60 PRO A 61 0 1.59 CISPEP 3 ALA A 209 SER A 210 0 -2.90 CISPEP 4 GLU A 215 PRO A 216 0 7.19 CISPEP 5 TRP A 291 ASN A 292 0 0.18 CISPEP 6 ARG A 380 PRO A 381 0 -7.18 CISPEP 7 TYR A 641 PRO A 642 0 -0.18 CRYST1 248.721 248.721 77.326 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004021 0.002321 0.000000 0.00000 SCALE2 0.000000 0.004643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012932 0.00000