HEADER HYDROLASE 27-FEB-20 6Y6T TITLE MOUSE GALACTOCEREBROSIDASE COMPLEXED WITH GALACTO-NOEUROSTEGINE GNS AT TITLE 2 PH 4.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOCEREBROSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GALCERASE,GALACTOCEREBROSIDE BETA-GALACTOSIDASE, COMPND 5 GALACTOSYLCERAMIDASE,GALACTOSYLCERAMIDE BETA-GALACTOSIDASE; COMPND 6 EC: 3.2.1.46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GALC; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEANE,J.MCLOUGHLIN REVDAT 3 24-JAN-24 6Y6T 1 REMARK REVDAT 2 03-FEB-21 6Y6T 1 JRNL REVDAT 1 13-JAN-21 6Y6T 0 JRNL AUTH A.VIUFF,S.SALAMONE,J.MCLOUGHLIN,J.E.DEANE,H.H.JENSEN JRNL TITL THE BICYCLIC FORM OF GALACTO -NOEUROSTEGINE IS A POTENT JRNL TITL 2 INHIBITOR OF BETA-GALACTOCEREBROSIDASE. JRNL REF ACS MED.CHEM.LETT. V. 12 56 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33488964 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00377 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9800 - 5.6600 1.00 2703 140 0.1444 0.1696 REMARK 3 2 5.6600 - 4.5000 1.00 2668 137 0.1140 0.1337 REMARK 3 3 4.5000 - 3.9300 1.00 2634 137 0.1160 0.1437 REMARK 3 4 3.9300 - 3.5700 1.00 2614 148 0.1399 0.1928 REMARK 3 5 3.5700 - 3.3100 1.00 2660 128 0.1669 0.2014 REMARK 3 6 3.3100 - 3.1200 1.00 2600 146 0.1841 0.2310 REMARK 3 7 3.1200 - 2.9600 1.00 2645 129 0.1805 0.2085 REMARK 3 8 2.9600 - 2.8300 1.00 2633 121 0.1764 0.2519 REMARK 3 9 2.8300 - 2.7300 1.00 2596 157 0.1888 0.2442 REMARK 3 10 2.7300 - 2.6300 1.00 2590 158 0.1857 0.2444 REMARK 3 11 2.6300 - 2.5500 1.00 2624 130 0.1974 0.2415 REMARK 3 12 2.5500 - 2.4800 1.00 2593 147 0.2106 0.2681 REMARK 3 13 2.4800 - 2.4100 1.00 2569 162 0.2260 0.2733 REMARK 3 14 2.4100 - 2.3500 1.00 2618 148 0.2489 0.3267 REMARK 3 15 2.3500 - 2.3000 1.00 2586 143 0.2777 0.2716 REMARK 3 16 2.3000 - 2.2500 1.00 2614 147 0.2979 0.3435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.303 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.733 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5376 REMARK 3 ANGLE : 0.893 7341 REMARK 3 CHIRALITY : 0.053 793 REMARK 3 PLANARITY : 0.006 924 REMARK 3 DIHEDRAL : 11.051 3020 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 25:40 OR RESSEQ 338:452) REMARK 3 ORIGIN FOR THE GROUP (A): 90.3934 110.5990 1.7315 REMARK 3 T TENSOR REMARK 3 T11: 0.8447 T22: 0.9597 REMARK 3 T33: 0.6261 T12: -0.3068 REMARK 3 T13: 0.1678 T23: 0.1617 REMARK 3 L TENSOR REMARK 3 L11: 2.3186 L22: 1.6534 REMARK 3 L33: 0.8112 L12: 0.4711 REMARK 3 L13: -0.4210 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: 0.6615 S13: 0.5044 REMARK 3 S21: -0.5043 S22: -0.0647 S23: -0.4320 REMARK 3 S31: -0.5490 S32: 0.5466 S33: -0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 41:337 REMARK 3 ORIGIN FOR THE GROUP (A): 75.1519 99.9695 22.3811 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.3731 REMARK 3 T33: 0.3371 T12: -0.1224 REMARK 3 T13: 0.0268 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6671 L22: 1.0790 REMARK 3 L33: 1.9578 L12: -0.2159 REMARK 3 L13: 0.1534 L23: 0.0435 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.1113 S13: 0.1116 REMARK 3 S21: -0.0808 S22: -0.0432 S23: -0.1561 REMARK 3 S31: -0.3224 S32: 0.3930 S33: -0.0168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 453:471 REMARK 3 ORIGIN FOR THE GROUP (A): 98.6598 105.5765 27.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.4674 T22: 0.9637 REMARK 3 T33: 0.6867 T12: -0.2814 REMARK 3 T13: 0.0511 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.4707 L22: 0.4038 REMARK 3 L33: 1.0412 L12: 0.4594 REMARK 3 L13: -0.2005 L23: 0.4504 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: 0.1540 S13: 0.2564 REMARK 3 S21: -0.0802 S22: -0.0180 S23: -0.7153 REMARK 3 S31: -0.4725 S32: 0.8844 S33: -0.0361 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 472:668 REMARK 3 ORIGIN FOR THE GROUP (A): 83.0912 78.2279 43.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.6021 REMARK 3 T33: 0.4329 T12: -0.0380 REMARK 3 T13: -0.0658 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.2587 L22: 2.8625 REMARK 3 L33: 2.2819 L12: -0.4406 REMARK 3 L13: 0.2687 L23: -0.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.3091 S13: -0.1378 REMARK 3 S21: 0.3222 S22: 0.0591 S23: -0.2628 REMARK 3 S31: 0.1606 S32: 0.4448 S33: -0.0999 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292107005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 41.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3ZR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6.8), AND 34% WT/VOL POLYETHYLENE GLYCOL 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 125.41500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.40838 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.96567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 125.41500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 72.40838 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.96567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 125.41500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 72.40838 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.96567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 125.41500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 72.40838 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.96567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 125.41500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 72.40838 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.96567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 125.41500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 72.40838 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.96567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 144.81677 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.93133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 144.81677 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.93133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 144.81677 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 51.93133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 144.81677 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.93133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 144.81677 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 51.93133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 144.81677 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 51.93133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 945 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 ILE A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 THR A 416 REMARK 465 PRO A 417 REMARK 465 GLN A 418 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 GLU A 403 CG CD OE1 OE2 REMARK 470 GLN A 405 CG CD OE1 NE2 REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 LEU A 431 CG CD1 CD2 REMARK 470 LEU A 432 CG CD1 CD2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 GLU A 505 CG CD OE1 OE2 REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG B 1 O5 NAG B 2 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 75 -71.05 -145.56 REMARK 500 ASP A 89 -5.08 73.84 REMARK 500 THR A 93 -44.24 157.45 REMARK 500 LEU A 105 -4.40 77.79 REMARK 500 ILE A 179 -83.25 -107.12 REMARK 500 ASN A 212 -121.51 -144.47 REMARK 500 THR A 241 -6.03 73.11 REMARK 500 THR A 243 -161.55 -113.34 REMARK 500 PHE A 260 -106.05 79.56 REMARK 500 ASN A 264 34.10 -86.35 REMARK 500 SER A 296 56.31 -114.61 REMARK 500 SER A 306 44.94 -109.27 REMARK 500 ALA A 311 76.60 -150.77 REMARK 500 GLU A 403 -114.43 -66.76 REMARK 500 ILE A 404 84.11 47.92 REMARK 500 ARG A 420 166.37 102.40 REMARK 500 LEU A 432 2.78 -65.21 REMARK 500 GLU A 443 -160.71 -121.07 REMARK 500 ASN A 490 -13.63 67.21 REMARK 500 ARG A 555 -49.74 69.63 REMARK 500 THR A 653 -166.24 -125.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 709 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 477 O REMARK 620 2 ASN A 479 OD1 77.5 REMARK 620 3 PHE A 511 O 95.6 95.9 REMARK 620 4 ASP A 660 OD1 77.0 153.5 93.5 REMARK 620 5 ASP A 660 OD2 124.5 157.1 88.7 47.5 REMARK 620 6 HOH A 808 O 92.3 92.1 169.8 82.1 81.6 REMARK 620 7 HOH A1005 O 162.4 86.7 93.5 117.5 70.6 80.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 710 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 538 NE2 REMARK 620 2 HIS A 644 NE2 81.4 REMARK 620 N 1 DBREF 6Y6T A 25 668 UNP P54818 GALC_MOUSE 41 684 SEQADV 6Y6T HIS A 15 UNP P54818 EXPRESSION TAG SEQADV 6Y6T HIS A 16 UNP P54818 EXPRESSION TAG SEQADV 6Y6T HIS A 17 UNP P54818 EXPRESSION TAG SEQADV 6Y6T HIS A 18 UNP P54818 EXPRESSION TAG SEQADV 6Y6T HIS A 19 UNP P54818 EXPRESSION TAG SEQADV 6Y6T HIS A 20 UNP P54818 EXPRESSION TAG SEQADV 6Y6T ILE A 21 UNP P54818 EXPRESSION TAG SEQADV 6Y6T GLU A 22 UNP P54818 EXPRESSION TAG SEQADV 6Y6T GLY A 23 UNP P54818 EXPRESSION TAG SEQADV 6Y6T ARG A 24 UNP P54818 EXPRESSION TAG SEQRES 1 A 654 HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG GLY ALA TYR SEQRES 2 A 654 VAL LEU ASP ASP SER ASP GLY LEU GLY ARG GLU PHE ASP SEQRES 3 A 654 GLY ILE GLY ALA VAL SER GLY GLY GLY ALA THR SER ARG SEQRES 4 A 654 LEU LEU VAL ASN TYR PRO GLU PRO TYR ARG SER GLU ILE SEQRES 5 A 654 LEU ASP TYR LEU PHE LYS PRO ASN PHE GLY ALA SER LEU SEQRES 6 A 654 HIS ILE LEU LYS VAL GLU ILE GLY GLY ASP GLY GLN THR SEQRES 7 A 654 THR ASP GLY THR GLU PRO SER HIS MET HIS TYR GLU LEU SEQRES 8 A 654 ASP GLU ASN TYR PHE ARG GLY TYR GLU TRP TRP LEU MET SEQRES 9 A 654 LYS GLU ALA LYS LYS ARG ASN PRO ASP ILE ILE LEU MET SEQRES 10 A 654 GLY LEU PRO TRP SER PHE PRO GLY TRP LEU GLY LYS GLY SEQRES 11 A 654 PHE SER TRP PRO TYR VAL ASN LEU GLN LEU THR ALA TYR SEQRES 12 A 654 TYR VAL VAL ARG TRP ILE LEU GLY ALA LYS HIS TYR HIS SEQRES 13 A 654 ASP LEU ASP ILE ASP TYR ILE GLY ILE TRP ASN GLU ARG SEQRES 14 A 654 PRO PHE ASP ALA ASN TYR ILE LYS GLU LEU ARG LYS MET SEQRES 15 A 654 LEU ASP TYR GLN GLY LEU GLN ARG VAL ARG ILE ILE ALA SEQRES 16 A 654 SER ASP ASN LEU TRP GLU PRO ILE SER SER SER LEU LEU SEQRES 17 A 654 LEU ASP GLN GLU LEU TRP LYS VAL VAL ASP VAL ILE GLY SEQRES 18 A 654 ALA HIS TYR PRO GLY THR TYR THR VAL TRP ASN ALA LYS SEQRES 19 A 654 MET SER GLY LYS LYS LEU TRP SER SER GLU ASP PHE SER SEQRES 20 A 654 THR ILE ASN SER ASN VAL GLY ALA GLY CYS TRP SER ARG SEQRES 21 A 654 ILE LEU ASN GLN ASN TYR ILE ASN GLY ASN MET THR SER SEQRES 22 A 654 THR ILE ALA TRP ASN LEU VAL ALA SER TYR TYR GLU GLU SEQRES 23 A 654 LEU PRO TYR GLY ARG SER GLY LEU MET THR ALA GLN GLU SEQRES 24 A 654 PRO TRP SER GLY HIS TYR VAL VAL ALA SER PRO ILE TRP SEQRES 25 A 654 VAL SER ALA HIS THR THR GLN PHE THR GLN PRO GLY TRP SEQRES 26 A 654 TYR TYR LEU LYS THR VAL GLY HIS LEU GLU LYS GLY GLY SEQRES 27 A 654 SER TYR VAL ALA LEU THR ASP GLY LEU GLY ASN LEU THR SEQRES 28 A 654 ILE ILE ILE GLU THR MET SER HIS GLN HIS SER MET CYS SEQRES 29 A 654 ILE ARG PRO TYR LEU PRO TYR TYR ASN VAL SER HIS GLN SEQRES 30 A 654 LEU ALA THR PHE THR LEU LYS GLY SER LEU ARG GLU ILE SEQRES 31 A 654 GLN GLU LEU GLN VAL TRP TYR THR LYS LEU GLY THR PRO SEQRES 32 A 654 GLN GLN ARG LEU HIS PHE LYS GLN LEU ASP THR LEU TRP SEQRES 33 A 654 LEU LEU ASP GLY SER GLY SER PHE THR LEU GLU LEU GLU SEQRES 34 A 654 GLU ASP GLU ILE PHE THR LEU THR THR LEU THR THR GLY SEQRES 35 A 654 ARG LYS GLY SER TYR PRO PRO PRO PRO SER SER LYS PRO SEQRES 36 A 654 PHE PRO THR ASN TYR LYS ASP ASP PHE ASN VAL GLU TYR SEQRES 37 A 654 PRO LEU PHE SER GLU ALA PRO ASN PHE ALA ASP GLN THR SEQRES 38 A 654 GLY VAL PHE GLU TYR TYR MET ASN ASN GLU ASP ARG GLU SEQRES 39 A 654 HIS ARG PHE THR LEU ARG GLN VAL LEU ASN GLN ARG PRO SEQRES 40 A 654 ILE THR TRP ALA ALA ASP ALA SER SER THR ILE SER VAL SEQRES 41 A 654 ILE GLY ASP HIS HIS TRP THR ASN MET THR VAL GLN CYS SEQRES 42 A 654 ASP VAL TYR ILE GLU THR PRO ARG SER GLY GLY VAL PHE SEQRES 43 A 654 ILE ALA GLY ARG VAL ASN LYS GLY GLY ILE LEU ILE ARG SEQRES 44 A 654 SER ALA THR GLY VAL PHE PHE TRP ILE PHE ALA ASN GLY SEQRES 45 A 654 SER TYR ARG VAL THR ALA ASP LEU GLY GLY TRP ILE THR SEQRES 46 A 654 TYR ALA SER GLY HIS ALA ASP VAL THR ALA LYS ARG TRP SEQRES 47 A 654 TYR THR LEU THR LEU GLY ILE LYS GLY TYR PHE ALA PHE SEQRES 48 A 654 GLY MET LEU ASN GLY THR ILE LEU TRP LYS ASN VAL ARG SEQRES 49 A 654 VAL LYS TYR PRO GLY HIS GLY TRP ALA ALA ILE GLY THR SEQRES 50 A 654 HIS THR PHE GLU PHE ALA GLN PHE ASP ASN PHE ARG VAL SEQRES 51 A 654 GLU ALA ALA ARG HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET ODW A 701 13 HET NAG A 706 14 HET CA A 709 1 HET NI A 710 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ODW (1~{R},2~{S},3~{S},4~{R},5~{R})-4-(HYDROXYMETHYL)-8- HETNAM 2 ODW AZABICYCLO[3.2.1]OCTANE-1,2,3-TRIOL HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN ODW GALACTO-NOEUROSTEGINE; GNS FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 5 ODW C8 H15 N O4 FORMUL 7 CA CA 2+ FORMUL 8 NI NI 2+ FORMUL 9 HOH *247(H2 O) HELIX 1 AA1 PRO A 61 LYS A 72 1 12 HELIX 2 AA2 TYR A 113 ASN A 125 1 13 HELIX 3 AA3 PRO A 138 LYS A 143 5 6 HELIX 4 AA4 ASN A 151 ASP A 171 1 21 HELIX 5 AA5 ASP A 186 GLN A 200 1 15 HELIX 6 AA6 PRO A 216 ASP A 224 1 9 HELIX 7 AA7 ASP A 224 VAL A 231 1 8 HELIX 8 AA8 VAL A 244 SER A 250 1 7 HELIX 9 AA9 SER A 265 ASN A 284 1 20 HELIX 10 AB1 ALA A 322 GLN A 333 1 12 HELIX 11 AB2 SER A 372 SER A 376 5 5 HELIX 12 AB3 GLY A 399 GLU A 403 5 5 HELIX 13 AB4 GLY A 568 SER A 574 5 7 SHEET 1 AA1 3 ALA A 26 LEU A 29 0 SHEET 2 AA1 3 GLN A 391 LEU A 397 1 O THR A 394 N TYR A 27 SHEET 3 AA1 3 SER A 437 LEU A 442 -1 O PHE A 438 N PHE A 395 SHEET 1 AA2 4 LEU A 35 GLU A 38 0 SHEET 2 AA2 4 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36 SHEET 3 AA2 4 SER A 353 THR A 358 -1 O THR A 358 N TYR A 340 SHEET 4 AA2 4 GLY A 346 HIS A 347 -1 N GLY A 346 O TYR A 354 SHEET 1 AA3 7 LEU A 35 GLU A 38 0 SHEET 2 AA3 7 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36 SHEET 3 AA3 7 SER A 353 THR A 358 -1 O THR A 358 N TYR A 340 SHEET 4 AA3 7 LEU A 364 GLU A 369 -1 O ILE A 367 N VAL A 355 SHEET 5 AA3 7 GLU A 446 THR A 451 -1 O LEU A 450 N ILE A 366 SHEET 6 AA3 7 GLU A 406 LYS A 413 -1 N GLN A 408 O THR A 451 SHEET 7 AA3 7 LEU A 421 TRP A 430 -1 O LYS A 424 N TYR A 411 SHEET 1 AA4 9 GLY A 41 SER A 46 0 SHEET 2 AA4 9 ILE A 81 ILE A 86 1 O LYS A 83 N SER A 46 SHEET 3 AA4 9 ILE A 129 PRO A 134 1 O ILE A 129 N LEU A 82 SHEET 4 AA4 9 TYR A 176 ILE A 177 1 O TYR A 176 N GLY A 132 SHEET 5 AA4 9 ARG A 206 ASN A 212 1 O ARG A 206 N ILE A 177 SHEET 6 AA4 9 VAL A 233 HIS A 237 1 O HIS A 237 N ASN A 212 SHEET 7 AA4 9 LYS A 253 PHE A 260 1 O LYS A 253 N ILE A 234 SHEET 8 AA4 9 SER A 287 TRP A 291 1 O TRP A 291 N ASP A 259 SHEET 9 AA4 9 GLY A 41 SER A 46 1 N GLY A 43 O ALA A 290 SHEET 1 AA5 2 VAL A 294 ALA A 295 0 SHEET 2 AA5 2 MET A 309 THR A 310 1 O MET A 309 N ALA A 295 SHEET 1 AA6 4 ASN A 473 ASP A 476 0 SHEET 2 AA6 4 ALA A 657 ALA A 667 -1 O PHE A 662 N ASP A 476 SHEET 3 AA6 4 PHE A 511 GLN A 515 -1 N LEU A 513 O PHE A 659 SHEET 4 AA6 4 PHE A 498 MET A 502 -1 N GLU A 499 O ARG A 514 SHEET 1 AA7 6 ASN A 473 ASP A 476 0 SHEET 2 AA7 6 ALA A 657 ALA A 667 -1 O PHE A 662 N ASP A 476 SHEET 3 AA7 6 ASN A 542 ILE A 551 -1 N ASP A 548 O ASP A 660 SHEET 4 AA7 6 TRP A 612 LYS A 620 -1 O ILE A 619 N MET A 543 SHEET 5 AA7 6 PHE A 623 LEU A 628 -1 O PHE A 625 N GLY A 618 SHEET 6 AA7 6 THR A 631 ARG A 638 -1 O LEU A 633 N GLY A 626 SHEET 1 AA8 7 ALA A 492 THR A 495 0 SHEET 2 AA8 7 THR A 531 ILE A 535 -1 O ILE A 532 N GLN A 494 SHEET 3 AA8 7 TRP A 646 THR A 651 -1 O ILE A 649 N SER A 533 SHEET 4 AA8 7 GLY A 558 VAL A 565 -1 N VAL A 565 O TRP A 646 SHEET 5 AA8 7 THR A 576 PHE A 583 -1 O PHE A 580 N ILE A 561 SHEET 6 AA8 7 SER A 587 ASP A 593 -1 O ARG A 589 N TRP A 581 SHEET 7 AA8 7 THR A 599 HIS A 604 -1 O TYR A 600 N VAL A 590 SSBOND 1 CYS A 271 CYS A 378 1555 1555 2.05 LINK ND2 ASN A 284 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 363 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 387 C1 NAG A 706 1555 1555 1.45 LINK ND2 ASN A 542 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O ASP A 477 CA CA A 709 1555 1555 2.41 LINK OD1 ASN A 479 CA CA A 709 1555 1555 2.37 LINK O PHE A 511 CA CA A 709 1555 1555 2.29 LINK NE2 HIS A 538 NI NI A 710 1555 1555 2.54 LINK NE2 HIS A 644 NI NI A 710 1555 1555 2.59 LINK OD1 ASP A 660 CA CA A 709 1555 1555 2.38 LINK OD2 ASP A 660 CA CA A 709 1555 1555 2.93 LINK CA CA A 709 O HOH A 808 1555 1555 2.56 LINK CA CA A 709 O HOH A1005 1555 1555 2.44 CISPEP 1 GLY A 48 GLY A 49 0 6.23 CISPEP 2 GLU A 60 PRO A 61 0 1.20 CISPEP 3 ALA A 209 SER A 210 0 0.69 CISPEP 4 GLU A 215 PRO A 216 0 5.85 CISPEP 5 TRP A 291 ASN A 292 0 -2.29 CISPEP 6 ARG A 380 PRO A 381 0 -5.45 CISPEP 7 TYR A 641 PRO A 642 0 -3.51 CRYST1 250.830 250.830 77.897 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003987 0.002302 0.000000 0.00000 SCALE2 0.000000 0.004604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012837 0.00000