HEADER DNA BINDING PROTEIN 05-MAR-20 6Y8N TITLE MYCOBACTERIUM THERMORESISTIBILE GYRB21 IN COMPLEX WITH REDX03863 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.6.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: ATCC19527; SOURCE 5 GENE: GYRB, RMCT_1109; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING SITES, DNA GYRASE, INHIBITORS, , REDX03863 IV, ISOMERASE, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.R.HENDERSON,C.E.M.STEVENSON,B.MALONE,Y.ZHOLNEROVYCH,L.A.MITCHENALL, AUTHOR 2 M.PICHOWICZ,D.H.MCGARRY,I.R.COOPER,C.CHARRIER,A.SALISBURY, AUTHOR 3 D.M.LAWSON,A.MAXWELL REVDAT 3 24-JAN-24 6Y8N 1 REMARK REVDAT 2 30-SEP-20 6Y8N 1 JRNL REVDAT 1 12-AUG-20 6Y8N 0 JRNL AUTH S.R.HENDERSON,C.E.M.STEVENSON,B.MALONE,Y.ZHOLNEROVYCH, JRNL AUTH 2 L.A.MITCHENALL,M.PICHOWICZ,D.H.MCGARRY,I.R.COOPER, JRNL AUTH 3 C.CHARRIER,A.M.SALISBURY,D.M.LAWSON,A.MAXWELL JRNL TITL STRUCTURAL AND MECHANISTIC ANALYSIS OF ATPASE INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL DNA GYRASE. JRNL REF J.ANTIMICROB.CHEMOTHER. V. 75 2835 2020 JRNL REFN ESSN 1460-2091 JRNL PMID 32728686 JRNL DOI 10.1093/JAC/DKAA286 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4079 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2982 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2692 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4066 ; 1.659 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6197 ; 1.466 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.098 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;31.160 ;21.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;12.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.233 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3420 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5674 ; 2.817 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 22 253 B 22 253 5498 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Y8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B6C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM ZINC CHLORIDE, 100 MM AMMONIUM REMARK 280 ACETATE, 3.5-5% (W/V) PEG6000, 3.5-5% (W/V) PEG8000, 3.5-5% (W/V) REMARK 280 PEG1000 AND 100 MM BIS-TRIS PH 7.0-7.3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.83300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 MET A 19 REMARK 465 GLY A 254 REMARK 465 GLY B 18 REMARK 465 MET B 19 REMARK 465 LEU B 20 REMARK 465 GLU B 21 REMARK 465 MET B 88 REMARK 465 HIS B 89 REMARK 465 GLU B 90 REMARK 465 SER B 91 REMARK 465 GLY B 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 20 CG CD1 CD2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 ARG A 29 NE CZ NH1 NH2 REMARK 470 LYS A 64 CE NZ REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CD CE NZ REMARK 470 LYS A 246 CD CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 470 ARG B 29 NE CZ NH1 NH2 REMARK 470 VAL B 93 CG1 CG2 REMARK 470 LYS B 152 CE NZ REMARK 470 LYS B 159 CD CE NZ REMARK 470 LYS B 163 NZ REMARK 470 LYS B 166 CD CE NZ REMARK 470 ARG B 192 CD NE CZ NH1 NH2 REMARK 470 LYS B 246 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 39 CG GLU B 39 CD 0.149 REMARK 500 GLU B 39 CD GLU B 39 OE1 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 GLU B 39 OE1 - CD - OE2 ANGL. DEV. = 27.4 DEGREES REMARK 500 GLU B 39 CG - CD - OE1 ANGL. DEV. = -21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 102 -33.14 -132.74 REMARK 500 SER A 153 -9.63 81.14 REMARK 500 ASP B 80 42.81 -109.26 REMARK 500 SER B 153 -9.87 83.02 REMARK 500 ASP B 213 -0.15 -145.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 NE2 REMARK 620 2 ASP B 51 OD2 116.0 REMARK 620 3 ASP B 55 OD2 124.7 110.7 REMARK 620 4 HOH B 600 O 101.5 99.7 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 ASP A 55 OD2 112.6 REMARK 620 3 HOH A 585 O 98.3 98.7 REMARK 620 4 HIS B 44 NE2 112.8 126.4 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 GLU A 138 OE2 47.0 REMARK 620 3 HOH A 502 O 58.0 21.0 REMARK 620 4 HOH A 608 O 97.5 101.2 81.9 REMARK 620 5 HOH A 618 O 137.1 98.7 100.3 116.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HOH A 550 O 107.8 REMARK 620 3 HOH A 605 O 99.8 95.4 REMARK 620 4 HOH A 611 O 94.3 88.3 163.6 REMARK 620 5 HOH A 619 O 108.6 141.5 90.4 77.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 NE2 REMARK 620 2 GLU B 76 OE1 51.6 REMARK 620 3 HOH B 501 O 65.0 88.3 REMARK 620 4 HOH B 627 O 92.0 139.3 56.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 ND1 REMARK 620 2 HOH B 629 O 94.6 REMARK 620 3 HOH B 653 O 161.5 76.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Y8L RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED WITH NOVOBIOCIN DBREF1 6Y8N A 20 254 UNP A0A117ILT2_MYCTH DBREF2 6Y8N A A0A117ILT2 20 254 DBREF1 6Y8N B 20 254 UNP A0A117ILT2_MYCTH DBREF2 6Y8N B A0A117ILT2 20 254 SEQADV 6Y8N GLY A 18 UNP A0A117ILT EXPRESSION TAG SEQADV 6Y8N MET A 19 UNP A0A117ILT EXPRESSION TAG SEQADV 6Y8N A UNP A0A117ILT LEU 103 DELETION SEQADV 6Y8N A UNP A0A117ILT HIS 104 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 105 DELETION SEQADV 6Y8N A UNP A0A117ILT GLY 106 DELETION SEQADV 6Y8N A UNP A0A117ILT GLY 107 DELETION SEQADV 6Y8N A UNP A0A117ILT LYS 108 DELETION SEQADV 6Y8N A UNP A0A117ILT PHE 109 DELETION SEQADV 6Y8N A UNP A0A117ILT ASP 110 DELETION SEQADV 6Y8N A UNP A0A117ILT SER 111 DELETION SEQADV 6Y8N A UNP A0A117ILT ASP 112 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 113 DELETION SEQADV 6Y8N A UNP A0A117ILT TYR 114 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 115 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 116 DELETION SEQADV 6Y8N A UNP A0A117ILT SER 117 DELETION SEQADV 6Y8N A UNP A0A117ILT GLY 118 DELETION SEQADV 6Y8N A UNP A0A117ILT GLY 119 DELETION SEQADV 6Y8N A UNP A0A117ILT LEU 120 DELETION SEQADV 6Y8N A UNP A0A117ILT HIS 121 DELETION SEQADV 6Y8N A UNP A0A117ILT GLY 122 DELETION SEQADV 6Y8N ASP A 213 UNP A0A117ILT VAL 213 ENGINEERED MUTATION SEQADV 6Y8N A UNP A0A117ILT THR 214 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 215 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 216 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 217 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 218 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 219 DELETION SEQADV 6Y8N A UNP A0A117ILT ASP 220 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 221 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 222 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 223 DELETION SEQADV 6Y8N A UNP A0A117ILT SER 224 DELETION SEQADV 6Y8N A UNP A0A117ILT ASP 225 DELETION SEQADV 6Y8N A UNP A0A117ILT VAL 226 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 227 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 228 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 229 DELETION SEQADV 6Y8N A UNP A0A117ILT PRO 230 DELETION SEQADV 6Y8N A UNP A0A117ILT LYS 231 DELETION SEQADV 6Y8N A UNP A0A117ILT SER 232 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 233 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 234 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 235 DELETION SEQADV 6Y8N A UNP A0A117ILT GLU 236 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 237 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 238 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 239 DELETION SEQADV 6Y8N A UNP A0A117ILT ALA 240 DELETION SEQADV 6Y8N A UNP A0A117ILT ASN 241 DELETION SEQADV 6Y8N A UNP A0A117ILT THR 242 DELETION SEQADV 6Y8N A UNP A0A117ILT GLN 243 DELETION SEQADV 6Y8N A UNP A0A117ILT LYS 244 DELETION SEQADV 6Y8N GLY A 245 UNP A0A117ILT VAL 245 ENGINEERED MUTATION SEQADV 6Y8N GLY B 18 UNP A0A117ILT EXPRESSION TAG SEQADV 6Y8N MET B 19 UNP A0A117ILT EXPRESSION TAG SEQADV 6Y8N B UNP A0A117ILT LEU 103 DELETION SEQADV 6Y8N B UNP A0A117ILT HIS 104 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 105 DELETION SEQADV 6Y8N B UNP A0A117ILT GLY 106 DELETION SEQADV 6Y8N B UNP A0A117ILT GLY 107 DELETION SEQADV 6Y8N B UNP A0A117ILT LYS 108 DELETION SEQADV 6Y8N B UNP A0A117ILT PHE 109 DELETION SEQADV 6Y8N B UNP A0A117ILT ASP 110 DELETION SEQADV 6Y8N B UNP A0A117ILT SER 111 DELETION SEQADV 6Y8N B UNP A0A117ILT ASP 112 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 113 DELETION SEQADV 6Y8N B UNP A0A117ILT TYR 114 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 115 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 116 DELETION SEQADV 6Y8N B UNP A0A117ILT SER 117 DELETION SEQADV 6Y8N B UNP A0A117ILT GLY 118 DELETION SEQADV 6Y8N B UNP A0A117ILT GLY 119 DELETION SEQADV 6Y8N B UNP A0A117ILT LEU 120 DELETION SEQADV 6Y8N B UNP A0A117ILT HIS 121 DELETION SEQADV 6Y8N B UNP A0A117ILT GLY 122 DELETION SEQADV 6Y8N ASP B 213 UNP A0A117ILT VAL 213 ENGINEERED MUTATION SEQADV 6Y8N B UNP A0A117ILT THR 214 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 215 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 216 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 217 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 218 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 219 DELETION SEQADV 6Y8N B UNP A0A117ILT ASP 220 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 221 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 222 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 223 DELETION SEQADV 6Y8N B UNP A0A117ILT SER 224 DELETION SEQADV 6Y8N B UNP A0A117ILT ASP 225 DELETION SEQADV 6Y8N B UNP A0A117ILT VAL 226 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 227 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 228 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 229 DELETION SEQADV 6Y8N B UNP A0A117ILT PRO 230 DELETION SEQADV 6Y8N B UNP A0A117ILT LYS 231 DELETION SEQADV 6Y8N B UNP A0A117ILT SER 232 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 233 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 234 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 235 DELETION SEQADV 6Y8N B UNP A0A117ILT GLU 236 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 237 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 238 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 239 DELETION SEQADV 6Y8N B UNP A0A117ILT ALA 240 DELETION SEQADV 6Y8N B UNP A0A117ILT ASN 241 DELETION SEQADV 6Y8N B UNP A0A117ILT THR 242 DELETION SEQADV 6Y8N B UNP A0A117ILT GLN 243 DELETION SEQADV 6Y8N B UNP A0A117ILT LYS 244 DELETION SEQADV 6Y8N GLY B 245 UNP A0A117ILT VAL 245 ENGINEERED MUTATION SEQRES 1 A 186 GLY MET LEU GLU GLY LEU GLU ALA VAL ARG LYS ARG PRO SEQRES 2 A 186 GLY MET TYR ILE GLY SER THR GLY GLU ARG GLY LEU HIS SEQRES 3 A 186 HIS LEU ILE TRP GLU VAL VAL ASP ASN ALA VAL ASP GLU SEQRES 4 A 186 ALA MET ALA GLY HIS ALA THR LYS VAL ARG VAL ARG LEU SEQRES 5 A 186 LEU ALA ASP GLY GLY VAL GLU VAL SER ASP ASP GLY ARG SEQRES 6 A 186 GLY ILE PRO VAL GLU MET HIS GLU SER GLY VAL PRO THR SEQRES 7 A 186 VAL ASP VAL VAL MET THR GLN VAL GLY VAL SER VAL VAL SEQRES 8 A 186 ASN ALA LEU SER THR ARG MET GLU VAL GLU ILE CYS ARG SEQRES 9 A 186 ASP GLY TYR GLN TRP PHE GLN THR TYR ASP LYS SER VAL SEQRES 10 A 186 PRO GLY THR LEU LYS GLN GLY GLU LYS THR ARG LYS THR SEQRES 11 A 186 GLY THR VAL VAL ARG PHE TRP PRO ASP PRO ASP VAL PHE SEQRES 12 A 186 GLU THR THR THR PHE ASP PHE GLU THR VAL ALA ARG ARG SEQRES 13 A 186 LEU GLN GLU GLN ALA PHE LEU ASN LYS GLY LEU THR ILE SEQRES 14 A 186 GLU LEU ILE ASP GLU ARG ASP GLY LYS HIS ARG THR PHE SEQRES 15 A 186 TYR TYR PRO GLY SEQRES 1 B 186 GLY MET LEU GLU GLY LEU GLU ALA VAL ARG LYS ARG PRO SEQRES 2 B 186 GLY MET TYR ILE GLY SER THR GLY GLU ARG GLY LEU HIS SEQRES 3 B 186 HIS LEU ILE TRP GLU VAL VAL ASP ASN ALA VAL ASP GLU SEQRES 4 B 186 ALA MET ALA GLY HIS ALA THR LYS VAL ARG VAL ARG LEU SEQRES 5 B 186 LEU ALA ASP GLY GLY VAL GLU VAL SER ASP ASP GLY ARG SEQRES 6 B 186 GLY ILE PRO VAL GLU MET HIS GLU SER GLY VAL PRO THR SEQRES 7 B 186 VAL ASP VAL VAL MET THR GLN VAL GLY VAL SER VAL VAL SEQRES 8 B 186 ASN ALA LEU SER THR ARG MET GLU VAL GLU ILE CYS ARG SEQRES 9 B 186 ASP GLY TYR GLN TRP PHE GLN THR TYR ASP LYS SER VAL SEQRES 10 B 186 PRO GLY THR LEU LYS GLN GLY GLU LYS THR ARG LYS THR SEQRES 11 B 186 GLY THR VAL VAL ARG PHE TRP PRO ASP PRO ASP VAL PHE SEQRES 12 B 186 GLU THR THR THR PHE ASP PHE GLU THR VAL ALA ARG ARG SEQRES 13 B 186 LEU GLN GLU GLN ALA PHE LEU ASN LYS GLY LEU THR ILE SEQRES 14 B 186 GLU LEU ILE ASP GLU ARG ASP GLY LYS HIS ARG THR PHE SEQRES 15 B 186 TYR TYR PRO GLY HET OGH A 401 31 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET EDO A 405 4 HET EDO A 406 4 HET OGH B 401 31 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HETNAM OGH 4-[(1~{S},5~{R})-6-AZANYL-3-AZABICYCLO[3.1.0]HEXAN-3- HETNAM 2 OGH YL]-6-FLUORANYL-~{N}-METHYL-2-(2-METHYLPYRIMIDIN-5- HETNAM 3 OGH YL)OXY-9~{H}-PYRIMIDO[4,5-B]INDOL-8-AMINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 OGH 2(C21 H21 F N8 O) FORMUL 4 ZN 6(ZN 2+) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 13 HOH *289(H2 O) HELIX 1 AA1 LEU A 20 ARG A 29 1 10 HELIX 2 AA2 ARG A 29 GLY A 35 1 7 HELIX 3 AA3 GLY A 38 HIS A 61 1 24 HELIX 4 AA4 PRO A 94 VAL A 123 1 10 HELIX 5 AA5 VAL A 125 LEU A 131 1 7 HELIX 6 AA6 ASP A 186 LEU A 200 1 15 HELIX 7 AA7 LEU B 23 ARG B 29 1 7 HELIX 8 AA8 ARG B 29 GLY B 35 1 7 HELIX 9 AA9 GLY B 38 HIS B 61 1 24 HELIX 10 AB1 PRO B 94 VAL B 123 1 10 HELIX 11 AB2 VAL B 125 LEU B 131 1 7 HELIX 12 AB3 ASP B 186 LEU B 200 1 15 SHEET 1 AA1 3 VAL A 154 PRO A 155 0 SHEET 2 AA1 3 TYR A 144 ASP A 151 -1 N ASP A 151 O VAL A 154 SHEET 3 AA1 3 LYS A 159 LYS A 163 -1 O GLY A 161 N GLN A 145 SHEET 1 AA2 8 VAL A 154 PRO A 155 0 SHEET 2 AA2 8 TYR A 144 ASP A 151 -1 N ASP A 151 O VAL A 154 SHEET 3 AA2 8 SER A 132 ARG A 141 -1 N VAL A 137 O GLN A 148 SHEET 4 AA2 8 GLY A 168 PRO A 175 -1 O VAL A 170 N GLU A 138 SHEET 5 AA2 8 VAL A 75 ASP A 79 -1 N VAL A 77 O VAL A 171 SHEET 6 AA2 8 LYS A 64 LEU A 69 -1 N ARG A 68 O GLU A 76 SHEET 7 AA2 8 THR A 205 ASP A 210 1 O GLU A 207 N VAL A 67 SHEET 8 AA2 8 HIS A 247 PHE A 250 -1 O PHE A 250 N ILE A 206 SHEET 1 AA3 3 VAL B 154 PRO B 155 0 SHEET 2 AA3 3 TYR B 144 ASP B 151 -1 N ASP B 151 O VAL B 154 SHEET 3 AA3 3 LYS B 159 LYS B 163 -1 O GLY B 161 N GLN B 145 SHEET 1 AA4 8 VAL B 154 PRO B 155 0 SHEET 2 AA4 8 TYR B 144 ASP B 151 -1 N ASP B 151 O VAL B 154 SHEET 3 AA4 8 SER B 132 ARG B 141 -1 N VAL B 137 O GLN B 148 SHEET 4 AA4 8 GLY B 168 PRO B 175 -1 O VAL B 170 N GLU B 138 SHEET 5 AA4 8 VAL B 75 ASP B 79 -1 N VAL B 77 O VAL B 171 SHEET 6 AA4 8 LYS B 64 LEU B 69 -1 N ARG B 68 O GLU B 76 SHEET 7 AA4 8 THR B 205 ASP B 210 1 O GLU B 207 N VAL B 67 SHEET 8 AA4 8 HIS B 247 PHE B 250 -1 O ARG B 248 N LEU B 208 LINK NE2 HIS A 44 ZN ZN B 402 1555 1555 1.97 LINK OD2 ASP A 51 ZN ZN A 402 1555 1555 1.93 LINK OD2 ASP A 55 ZN ZN A 402 1555 1555 1.92 LINK NE2AHIS A 61 ZN ZN A 403 1555 1555 2.14 LINK ND1BHIS A 61 ZN ZN A 404 1555 1555 2.18 LINK OE2 GLU A 138 ZN ZN A 403 1555 2545 2.43 LINK ZN ZN A 402 O HOH A 585 1555 1555 1.97 LINK ZN ZN A 402 NE2 HIS B 44 1555 1555 1.96 LINK ZN ZN A 403 O HOH A 502 1555 1555 2.11 LINK ZN ZN A 403 O HOH A 608 1555 1555 2.11 LINK ZN ZN A 403 O HOH A 618 1555 1555 1.73 LINK ZN ZN A 404 O HOH A 550 1555 1555 2.23 LINK ZN ZN A 404 O HOH A 605 1555 1555 1.95 LINK ZN ZN A 404 O HOH A 611 1555 1555 2.25 LINK ZN ZN A 404 O HOH A 619 1555 1555 2.29 LINK OD2 ASP B 51 ZN ZN B 402 1555 1555 1.89 LINK OD2 ASP B 55 ZN ZN B 402 1555 1555 2.00 LINK NE2 HIS B 61 ZN ZN B 403 1555 1555 2.24 LINK ND1 HIS B 61 ZN ZN B 404 1555 1555 2.67 LINK OE1 GLU B 76 ZN ZN B 403 1555 2556 2.16 LINK ZN ZN B 402 O HOH B 600 1555 1555 1.99 LINK ZN ZN B 403 O HOH B 501 1555 1555 1.74 LINK ZN ZN B 403 O HOH B 627 1555 1555 2.44 LINK ZN ZN B 404 O HOH B 629 1555 1555 1.91 LINK ZN ZN B 404 O HOH B 653 1555 1555 2.50 CRYST1 43.769 51.666 82.911 90.00 100.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022847 0.000000 0.004129 0.00000 SCALE2 0.000000 0.019355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012257 0.00000