HEADER METAL BINDING PROTEIN 06-MAR-20 6Y95
TITLE CA2+-FREE CALMODULIN MUTANT N53I
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CALMODULIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: CALM1, CALM, CAM, CAM1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2
KEYWDS MUTANT, METAL-BINDING, SIGNALING PROTEIN, CPVT, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.HOLT,L.N.HAMBORG,K.LAU,M.BROHUS,A.B.SORENSEN,K.T.LARSEN,C.SOMMER,
AUTHOR 2 F.V.PETEGEM,M.T.OVERGAARD,R.WIMMER
REVDAT 5 19-JUN-24 6Y95 1 REMARK
REVDAT 4 14-JUN-23 6Y95 1 REMARK
REVDAT 3 10-JUN-20 6Y95 1 JRNL
REVDAT 2 06-MAY-20 6Y95 1 JRNL
REVDAT 1 29-APR-20 6Y95 0
JRNL AUTH C.HOLT,L.HAMBORG,K.LAU,M.BROHUS,A.B.SORENSEN,K.T.LARSEN,
JRNL AUTH 2 C.SOMMER,F.VAN PETEGEM,M.T.OVERGAARD,R.WIMMER
JRNL TITL THE ARRHYTHMOGENIC N53I VARIANT SUBTLY CHANGES THE STRUCTURE
JRNL TITL 2 AND DYNAMICS IN THE CALMODULIN N-TERMINAL DOMAIN, ALTERING
JRNL TITL 3 ITS INTERACTION WITH THE CARDIAC RYANODINE RECEPTOR.
JRNL REF J.BIOL.CHEM. V. 295 7620 2020
JRNL REFN ESSN 1083-351X
JRNL PMID 32317284
JRNL DOI 10.1074/JBC.RA120.013430
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : YASARA 14.12.2
REMARK 3 AUTHORS : YASARA BIOSCIENCES GMBH DR. ELMAR KRIEGER WAGRAMER
REMARK 3 STRASSE 25/3/45 1220 VIENNA AUSTRIA / EUROPE
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6Y95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1292106901.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.1; 298.1; 298.1
REMARK 210 PH : 6.3; 6.56; 6.53
REMARK 210 IONIC STRENGTH : 105; 42; 42
REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM
REMARK 210 SAMPLE CONTENTS : 1.9 MM [U-99% 13C; U-99% 15N]
REMARK 210 CALMODULIN N53I, 20 MM HEPES,
REMARK 210 100 MM POTASSIUM CHLORIDE, 1 MM
REMARK 210 EDTA, 2 MM SODIUM AZIDE, 0.05 MM
REMARK 210 TSP, 95% H2O/5% D2O; 1.2 MM [U-
REMARK 210 99% 15N] CALMODULIN N53I, 2 MM
REMARK 210 HEPES, 10 MM POTASSIUM CHLORIDE,
REMARK 210 10 MM EDTA, 2 MM SODIUM AZIDE,
REMARK 210 0.05 MM TSP, 95% H2O/5% D2O; 1.2
REMARK 210 MM [U-99% 13C; U-99% 15N]
REMARK 210 CALMODULIN, 2 MM HEPES, 10 MM
REMARK 210 POTASSIUM CHLORIDE, 10 MM EDTA,
REMARK 210 2 MM SODIUM AZIDE, 0.05 MM TSP,
REMARK 210 95% H2O/5% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC
REMARK 210 ALIPHATIC; 2D 1H-13C HSQC
REMARK 210 AROMATIC; 3D HNCA; 3D CBCA(CO)NH;
REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY;
REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY
REMARK 210 ALIPHATIC; 3D 1H-13C NOESY
REMARK 210 AROMATIC; 15N-T1; 15N-T2; {1H}-
REMARK 210 15N-NOE; T2-RELAXATION DISPERSION
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE III
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : CYANA 2.1, TALOS TALOS+, CARA
REMARK 210 1.8.4.2, TOPSPIN 3.0
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 30
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 2 LYS A 77 -158.11 72.87
REMARK 500 2 ALA A 147 -165.56 -77.22
REMARK 500 3 ILE A 130 96.69 -69.70
REMARK 500 3 ALA A 147 -169.23 -75.13
REMARK 500 4 LYS A 77 114.23 68.31
REMARK 500 4 GLU A 114 -32.04 -130.92
REMARK 500 4 LEU A 116 -162.62 67.43
REMARK 500 5 GLU A 114 47.55 -92.09
REMARK 500 6 SER A 81 -66.90 -95.00
REMARK 500 7 THR A 79 47.90 -86.05
REMARK 500 8 ASP A 93 49.72 -85.80
REMARK 500 9 ASP A 56 43.14 -89.55
REMARK 500 9 GLU A 82 -60.82 -100.03
REMARK 500 10 GLN A 3 13.80 58.93
REMARK 500 10 SER A 81 -66.81 -95.08
REMARK 500 10 ILE A 130 -52.32 -123.27
REMARK 500 11 SER A 81 -66.85 -98.29
REMARK 500 12 LEU A 112 51.99 -142.84
REMARK 500 12 LYS A 115 -27.08 63.94
REMARK 500 12 THR A 146 14.40 -145.77
REMARK 500 13 SER A 81 -66.80 -95.01
REMARK 500 13 GLU A 82 -66.70 -94.70
REMARK 500 13 LYS A 115 41.87 -140.72
REMARK 500 14 ASP A 2 33.20 -69.47
REMARK 500 14 ALA A 147 150.45 -48.69
REMARK 500 15 THR A 79 98.86 -160.54
REMARK 500 15 LEU A 116 -147.76 52.62
REMARK 500 16 ASP A 78 -148.98 -117.03
REMARK 500 18 ASP A 129 47.61 -79.52
REMARK 500 19 ASP A 131 99.74 -61.14
REMARK 500 20 LYS A 77 78.22 -167.49
REMARK 500 20 ASP A 80 -66.69 -95.37
REMARK 500 20 SER A 81 -72.88 -103.57
REMARK 500 20 GLU A 82 -70.91 -100.25
REMARK 500 20 LEU A 112 31.77 -90.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 34497 RELATED DB: BMRB
REMARK 900 CA2+-FREE CALMODULIN MUTANT N53I
DBREF 6Y95 A 1 148 UNP P0DP23 CALM1_HUMAN 2 149
SEQADV 6Y95 ILE A 53 UNP P0DP23 ASN 54 ENGINEERED MUTATION
SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS
SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR
SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU
SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE
SEQRES 5 A 148 ILE GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE
SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP
SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL
SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU
SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR
SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE
SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN
SEQRES 12 A 148 MET MET THR ALA LYS
HELIX 1 AA1 THR A 5 LEU A 18 1 14
HELIX 2 AA2 LYS A 30 LEU A 39 1 10
HELIX 3 AA3 THR A 44 GLU A 54 1 11
HELIX 4 AA4 PHE A 65 MET A 76 1 12
HELIX 5 AA5 THR A 79 ARG A 90 1 12
HELIX 6 AA6 ALA A 102 GLY A 113 1 12
HELIX 7 AA7 THR A 117 ALA A 128 1 12
HELIX 8 AA8 TYR A 138 MET A 145 1 8
SHEET 1 AA1 2 THR A 26 THR A 28 0
SHEET 2 AA1 2 THR A 62 ASP A 64 -1 O ILE A 63 N ILE A 27
SHEET 1 AA2 3 TYR A 99 SER A 101 0
SHEET 2 AA2 3 GLN A 135 ASN A 137 -1 O VAL A 136 N ILE A 100
SHEET 3 AA2 3 ASP A 129 ILE A 130 -1 N ILE A 130 O GLN A 135
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1