HEADER RNA BINDING PROTEIN 06-MAR-20 6Y96 TITLE SOLUTION STRUCTURE OF COLD-SHOCK DOMAIN 9 OF DROSOPHILA UPSTREAM OF N- TITLE 2 RAS (UNR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM OF N-RAS, ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FIRST TWO RESIDUES (GA) ARE LEFTOVERS FROM THE COMPND 6 CLEAVAGE/CLONING SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: UNR, BCDNA:LD13080, CR32028, DMEL\CG7015, DUNR, MRE30, UNR, SOURCE 6 UNR, CG7015, DMEL_CG7015; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CSD, RBP, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.J.SWEETAPPLE,N.M.HOLLMANN,B.SIMON,J.HENNIG REVDAT 3 14-JUN-23 6Y96 1 REMARK REVDAT 2 10-FEB-21 6Y96 1 JRNL REVDAT 1 29-JUL-20 6Y96 0 JRNL AUTH N.M.HOLLMANN,P.K.A.JAGTAP,P.MASIEWICZ,T.GUITART,B.SIMON, JRNL AUTH 2 J.PROVAZNIK,F.STEIN,P.HABERKANT,L.J.SWEETAPPLE,L.VILLACORTA, JRNL AUTH 3 D.MOOIJMAN,V.BENES,M.M.SAVITSKI,F.GEBAUER,J.HENNIG JRNL TITL PSEUDO-RNA-BINDING DOMAINS MEDIATE RNA STRUCTURE SPECIFICITY JRNL TITL 2 IN UPSTREAM OF N-RAS. JRNL REF CELL REP V. 32 07930 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32697992 JRNL DOI 10.1016/J.CELREP.2020.107930 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107157. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.24 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.24 MM [U-99% REMARK 210 13C; U-99% 15N] PROTEIN, 50 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 2D 1H- REMARK 210 1H NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 26 OE1 GLU A 72 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 32.88 -78.55 REMARK 500 1 VAL A 23 93.90 -61.28 REMARK 500 1 ARG A 24 25.82 42.90 REMARK 500 1 GLN A 25 52.46 -103.75 REMARK 500 1 GLN A 59 98.33 -64.78 REMARK 500 1 ASN A 88 69.01 63.68 REMARK 500 2 ASP A 5 -2.14 72.90 REMARK 500 2 SER A 8 36.35 -79.63 REMARK 500 2 GLN A 25 74.87 -107.48 REMARK 500 2 GLU A 46 110.82 -161.31 REMARK 500 3 VAL A 23 71.09 62.21 REMARK 500 3 GLN A 59 88.96 -64.63 REMARK 500 3 ASN A 88 73.11 57.71 REMARK 500 4 ASN A 21 44.89 -95.16 REMARK 500 4 MET A 55 3.18 -65.03 REMARK 500 4 GLN A 59 88.35 -58.23 REMARK 500 5 ALA A 2 76.76 -116.34 REMARK 500 5 PHE A 9 -66.39 -151.66 REMARK 500 5 MET A 55 2.13 -64.66 REMARK 500 5 GLN A 59 95.15 -66.62 REMARK 500 5 ASN A 88 71.33 62.13 REMARK 500 6 PHE A 9 -47.17 -161.21 REMARK 500 6 ARG A 24 26.39 44.29 REMARK 500 6 GLN A 59 93.50 -63.42 REMARK 500 6 ASN A 88 72.33 63.39 REMARK 500 7 PHE A 9 9.03 -177.86 REMARK 500 7 ARG A 10 -70.65 -142.33 REMARK 500 7 ARG A 24 25.93 44.17 REMARK 500 7 GLN A 25 75.72 -115.82 REMARK 500 7 GLN A 59 95.79 -62.77 REMARK 500 8 LYS A 3 41.42 -89.29 REMARK 500 8 ARG A 16 99.03 -67.59 REMARK 500 8 ARG A 24 23.60 45.90 REMARK 500 8 VAL A 45 -77.45 -77.66 REMARK 500 8 ASN A 88 70.43 57.45 REMARK 500 9 ARG A 10 120.55 -171.82 REMARK 500 9 VAL A 23 72.56 59.89 REMARK 500 9 ARG A 24 25.61 47.57 REMARK 500 9 GLN A 25 74.12 -107.66 REMARK 500 9 GLN A 59 92.01 -63.31 REMARK 500 10 ARG A 24 24.84 -72.11 REMARK 500 10 MET A 55 3.69 -66.76 REMARK 500 10 GLN A 59 99.02 -59.41 REMARK 500 10 ASN A 88 69.24 64.55 REMARK 500 11 VAL A 23 76.38 60.43 REMARK 500 11 ARG A 24 26.83 46.00 REMARK 500 11 GLN A 25 70.04 -106.40 REMARK 500 11 GLN A 59 158.60 -45.07 REMARK 500 11 ASN A 88 70.51 62.52 REMARK 500 12 ARG A 16 99.48 -60.89 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34498 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF COLD-SHOCK DOMAIN 9 OF DROSOPHILA UPSTREAM OF REMARK 900 N-RAS (UNR) DBREF 6Y96 A 3 94 UNP Q9VSK3 Q9VSK3_DROME 899 990 SEQADV 6Y96 GLY A 1 UNP Q9VSK3 CLONING ARTIFACT SEQADV 6Y96 ALA A 2 UNP Q9VSK3 CLONING ARTIFACT SEQRES 1 A 94 GLY ALA LYS GLY ASP LEU VAL SER PHE ARG ILE ASP GLU SEQRES 2 A 94 SER GLY ARG ALA ALA CYS VAL ASN ALA VAL ARG GLN LYS SEQRES 3 A 94 LYS ARG ALA THR VAL ASP SER ILE LYS GLY GLN PHE GLY SEQRES 4 A 94 PHE LEU ASN PHE GLU VAL GLU ASP GLY LYS LYS LEU PHE SEQRES 5 A 94 PHE HIS MET SER GLU VAL GLN GLY ASN THR VAL ALA LEU SEQRES 6 A 94 HIS PRO GLY ASP THR VAL GLU PHE SER VAL VAL THR ASN SEQRES 7 A 94 GLN ARG ASN GLY LYS SER SER ALA CYS ASN VAL LEU LYS SEQRES 8 A 94 ILE ASN ASP HELIX 1 AA1 ILE A 11 GLY A 15 5 5 SHEET 1 AA1 6 LYS A 26 LYS A 35 0 SHEET 2 AA1 6 PHE A 38 GLU A 44 -1 O PHE A 38 N LYS A 35 SHEET 3 AA1 6 LYS A 50 HIS A 54 -1 O PHE A 53 N GLY A 39 SHEET 4 AA1 6 SER A 84 ILE A 92 1 O ALA A 86 N PHE A 52 SHEET 5 AA1 6 THR A 70 THR A 77 -1 N GLU A 72 O LEU A 90 SHEET 6 AA1 6 LYS A 26 LYS A 35 -1 N LYS A 27 O PHE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1