HEADER METAL BINDING PROTEIN 11-MAR-20 6YA1 TITLE ZINC METALLOPROTEASE PROA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC METALLOPROTEINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEP1,PRO A; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS PROA, M4 PROTEASE, TLP-LIKE, METALLOPROTEASE, ZINC, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHMELZ,W.BLANKENFELDT REVDAT 3 24-JAN-24 6YA1 1 REMARK REVDAT 2 21-APR-21 6YA1 1 JRNL REVDAT 1 03-FEB-21 6YA1 0 JRNL AUTH L.SCHEITHAUER,S.THIEM,S.SCHMELZ,A.DELLMANN,K.BUSSOW, JRNL AUTH 2 R.M.H.J.BROUWER,C.M.UNAL,W.BLANKENFELDT,M.STEINERT JRNL TITL ZINC METALLOPROTEASE PROA OF LEGIONELLA PNEUMOPHILA JRNL TITL 2 INCREASES ALVEOLAR SEPTAL THICKNESS IN HUMAN LUNG TISSUE JRNL TITL 3 EXPLANTS BY COLLAGEN IV DEGRADATION. JRNL REF CELL.MICROBIOL. V. 23 13313 2021 JRNL REFN ESSN 1462-5822 JRNL PMID 33491325 JRNL DOI 10.1111/CMI.13313 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 58867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3900 - 4.0800 1.00 2903 142 0.1628 0.1904 REMARK 3 2 4.0800 - 3.2400 0.99 2742 153 0.1442 0.1711 REMARK 3 3 3.2400 - 2.8300 1.00 2726 141 0.1634 0.1462 REMARK 3 4 2.8300 - 2.5700 1.00 2690 153 0.1515 0.1889 REMARK 3 5 2.5700 - 2.3900 1.00 2690 134 0.1523 0.1569 REMARK 3 6 2.3900 - 2.2500 1.00 2684 133 0.1486 0.1645 REMARK 3 7 2.2500 - 2.1300 0.99 2686 133 0.1526 0.1736 REMARK 3 8 2.1300 - 2.0400 1.00 2667 136 0.1589 0.1869 REMARK 3 9 2.0400 - 1.9600 0.99 2657 142 0.1766 0.1916 REMARK 3 10 1.9600 - 1.9000 0.99 2619 136 0.1758 0.1976 REMARK 3 11 1.9000 - 1.8400 1.00 2685 141 0.1808 0.1979 REMARK 3 12 1.8400 - 1.7800 0.99 2612 170 0.1849 0.2021 REMARK 3 13 1.7800 - 1.7400 0.99 2637 134 0.1905 0.1990 REMARK 3 14 1.7400 - 1.6900 0.99 2624 128 0.1824 0.2179 REMARK 3 15 1.6900 - 1.6600 0.99 2655 144 0.2086 0.2180 REMARK 3 16 1.6600 - 1.6200 0.99 2614 117 0.2127 0.2604 REMARK 3 17 1.6200 - 1.5900 0.99 2619 134 0.2136 0.2690 REMARK 3 18 1.5900 - 1.5600 0.99 2631 147 0.2210 0.2287 REMARK 3 19 1.5600 - 1.5300 0.99 2587 141 0.2328 0.2576 REMARK 3 20 1.5300 - 1.5000 0.99 2625 128 0.2387 0.2735 REMARK 3 21 1.5000 - 1.4800 0.98 2573 154 0.2531 0.2519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 47.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (W/V) ZINC ACETATE AND 10 % REMARK 280 (V/V) 2 PROPANOL IN 0.1 M (W/V) SODIUM CACODYLATE PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.13100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.13100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 405 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 68 REMARK 465 THR A 69 REMARK 465 PRO A 70 REMARK 465 ASP A 71 REMARK 465 THR A 72 REMARK 465 GLN A 73 REMARK 465 SER A 74 REMARK 465 THR A 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 567 O HOH A 762 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -64.83 -137.37 REMARK 500 ASP A 88 65.94 -153.19 REMARK 500 ASP A 88 64.90 -153.19 REMARK 500 SER A 95 86.12 -169.56 REMARK 500 GLU A 141 66.56 -101.93 REMARK 500 LYS A 148 -13.29 -146.08 REMARK 500 ASP A 156 -110.82 -148.61 REMARK 500 LEU A 162 44.98 -79.20 REMARK 500 HIS A 180 -102.41 -120.36 REMARK 500 LEU A 183 121.39 -39.28 REMARK 500 TYR A 185 43.53 -86.76 REMARK 500 TYR A 185 42.85 -86.76 REMARK 500 MET A 241 -32.79 -135.56 REMARK 500 TYR A 291 -43.66 -130.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE2 REMARK 620 2 HOH A 539 O 89.0 REMARK 620 3 HOH A 577 O 87.3 94.0 REMARK 620 4 HOH A 658 O 84.7 93.9 168.6 REMARK 620 5 HOH A 726 O 87.0 174.7 89.3 82.2 REMARK 620 6 HOH A 820 O 177.9 89.1 93.8 94.5 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 NE2 REMARK 620 2 ASP A 90 OD2 111.7 REMARK 620 3 HIS A 135 ND1 119.4 102.6 REMARK 620 4 ASP A 154 OD2 98.7 108.2 116.1 REMARK 620 5 HOH A 504 O 77.6 66.7 162.9 58.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 112 NE2 0.0 REMARK 620 3 GLU A 118 OE1 110.2 110.2 REMARK 620 4 GLU A 118 OE1 110.2 110.2 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD1 REMARK 620 2 HOH A 549 O 99.7 REMARK 620 3 HOH A 618 O 91.7 166.9 REMARK 620 4 HOH A 757 O 98.7 80.4 91.6 REMARK 620 5 HOH A 765 O 164.2 73.8 96.7 94.4 REMARK 620 6 HOH A 770 O 106.5 88.6 94.3 153.9 59.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 174 NE2 101.8 REMARK 620 3 GLU A 194 OE1 120.7 90.1 REMARK 620 4 ACT A 406 O 95.9 96.9 140.5 REMARK 620 5 ACT A 406 OXT 114.6 135.7 92.1 56.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 224 OD2 REMARK 620 2 HOH A 522 O 87.9 REMARK 620 3 HOH A 536 O 89.4 176.0 REMARK 620 4 HOH A 583 O 93.7 91.4 85.8 REMARK 620 5 HOH A 747 O 90.0 96.3 86.6 171.6 REMARK 620 6 HOH A 806 O 173.8 88.2 94.8 91.2 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 254 OD2 REMARK 620 2 HIS A 256 ND1 98.2 REMARK 620 3 ASP A 336 OXT 40.1 58.3 REMARK 620 4 HOH A 513 O 79.2 87.3 76.2 REMARK 620 5 HOH A 629 O 99.8 95.9 105.1 176.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 264 NE2 REMARK 620 2 ACT A 407 OXT 89.8 REMARK 620 3 ACT A 407 O 122.2 62.5 REMARK 620 4 HOH A 564 O 95.7 160.3 98.9 REMARK 620 5 HOH A 768 O 112.5 92.2 117.9 103.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 411 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 524 O 89.5 REMARK 620 3 HOH A 592 O 69.3 94.0 REMARK 620 4 HOH A 687 O 103.7 85.6 173.0 REMARK 620 5 HOH A 773 O 174.9 86.4 107.9 79.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 411 DBREF 6YA1 A 1 336 UNP P21347 PROA_LEGPN 208 543 SEQRES 1 A 336 GLU LYS VAL GLN ALA LYS GLY MET GLY PHE GLY GLY ASN SEQRES 2 A 336 ARG LYS ILE GLY GLU TYR GLN PHE GLY LYS ASP LEU PRO SEQRES 3 A 336 LEU LEU GLU ILE THR ARG ASP SER SER VAL GLU MET CYS SEQRES 4 A 336 PHE MET GLU ASN THR ASP VAL LYS VAL VAL ASP MET GLY SEQRES 5 A 336 HIS LYS TYR TYR SER ASN ASN LYS PRO MET GLN PHE THR SEQRES 6 A 336 CYS LYS GLU THR PRO ASP THR GLN SER THR LYS THR TYR SEQRES 7 A 336 TYR THR GLY TYR SER ALA ASP GLY TYR ASP ARG ASP ASN SEQRES 8 A 336 GLY ALA ALA SER PRO THR ASN ASP ALA LEU TYR ALA GLY SEQRES 9 A 336 TYR VAL ILE LYS HIS MET TYR HIS ASP TRP TYR GLY VAL SEQRES 10 A 336 GLU ALA LEU THR LYS SER ASP GLY SER PRO MET GLN LEU SEQRES 11 A 336 VAL MET ARG VAL HIS TYR GLY GLN GLY TYR GLU ASN ALA SEQRES 12 A 336 TYR TRP ASP GLY LYS GLN MET THR PHE GLY ASP GLY ASP SEQRES 13 A 336 THR MET MET TYR PRO LEU VAL SER LEU GLY VAL GLY GLY SEQRES 14 A 336 HIS GLU VAL SER HIS GLY PHE THR GLU GLN HIS SER GLY SEQRES 15 A 336 LEU GLU TYR PHE GLY GLN SER GLY GLY MET ASN GLU SER SEQRES 16 A 336 PHE SER ASP MET ALA ALA GLN ALA ALA GLU TYR TYR SER SEQRES 17 A 336 VAL GLY LYS ASN SER TRP GLN ILE GLY PRO GLU ILE MET SEQRES 18 A 336 LYS GLU ASP SER GLY TYR ASP ALA LEU ARG TYR MET ASP SEQRES 19 A 336 LYS PRO SER ARG ASP GLY MET SER ILE ASP VAL ALA ASP SEQRES 20 A 336 ASP TYR TYR GLY GLY LEU ASP VAL HIS TYR SER SER GLY SEQRES 21 A 336 VAL TYR ASN HIS LEU PHE TYR ILE LEU ALA ASN GLN PRO SEQRES 22 A 336 ASN TRP ASN LEU ARG MET ALA PHE ASP VAL MET VAL LYS SEQRES 23 A 336 ALA ASN MET ASP TYR TRP THR PRO TYR SER THR PHE ASP SEQRES 24 A 336 GLU GLY GLY CYS GLY MET LEU SER ALA ALA LYS ASP LEU SEQRES 25 A 336 GLY TYR ASN LEU ASP ASP ILE LYS LYS SER LEU SER GLU SEQRES 26 A 336 VAL THR ILE ASN TYR GLN SER CYS TYR VAL ASP HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ACT A 406 7 HET ACT A 407 7 HET CA A 408 1 HET CA A 409 1 HET CA A 410 1 HET CA A 411 1 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 CA 4(CA 2+) FORMUL 13 HOH *334(H2 O) HELIX 1 AA1 SER A 95 GLY A 116 1 22 HELIX 2 AA2 SER A 164 GLN A 179 1 16 HELIX 3 AA3 PHE A 186 GLY A 210 1 25 HELIX 4 AA4 LYS A 222 GLY A 226 5 5 HELIX 5 AA5 LYS A 235 GLY A 240 5 6 HELIX 6 AA6 VAL A 245 TYR A 249 5 5 HELIX 7 AA7 ASP A 254 SER A 259 1 6 HELIX 8 AA8 SER A 259 ASN A 271 1 13 HELIX 9 AA9 ASN A 276 TYR A 291 1 16 HELIX 10 AB1 THR A 297 GLY A 313 1 17 HELIX 11 AB2 ASN A 315 VAL A 326 1 12 HELIX 12 AB3 ASN A 329 CYS A 333 5 5 SHEET 1 AA1 5 GLY A 17 PHE A 21 0 SHEET 2 AA1 5 LYS A 2 ASN A 13 -1 N GLY A 9 O PHE A 21 SHEET 3 AA1 5 LEU A 28 ASP A 33 -1 O LEU A 28 N GLY A 7 SHEET 4 AA1 5 MET A 38 PHE A 40 -1 O PHE A 40 N THR A 31 SHEET 5 AA1 5 GLN A 63 THR A 65 -1 O PHE A 64 N CYS A 39 SHEET 1 AA2 3 GLY A 17 PHE A 21 0 SHEET 2 AA2 3 LYS A 2 ASN A 13 -1 N GLY A 9 O PHE A 21 SHEET 3 AA2 3 TYR A 78 TYR A 79 1 O TYR A 78 N MET A 8 SHEET 1 AA3 4 VAL A 46 ASP A 50 0 SHEET 2 AA3 4 LEU A 130 TYR A 136 1 O VAL A 134 N VAL A 49 SHEET 3 AA3 4 MET A 150 GLY A 153 1 O MET A 150 N ARG A 133 SHEET 4 AA3 4 ALA A 143 TRP A 145 -1 N TYR A 144 O THR A 151 SHEET 1 AA4 2 GLN A 215 ILE A 216 0 SHEET 2 AA4 2 ARG A 231 TYR A 232 -1 O ARG A 231 N ILE A 216 SSBOND 1 CYS A 39 CYS A 66 1555 1555 2.05 SSBOND 2 CYS A 303 CYS A 333 1555 1555 2.05 LINK OE2 GLU A 42 CA CA A 410 1555 1555 2.08 LINK NE2 HIS A 53 ZN ZN A 402 1555 1555 2.12 LINK OD2 ASP A 90 ZN ZN A 402 1555 1555 1.92 LINK NE2 HIS A 112 ZN ZN A 405 1555 1555 2.11 LINK NE2 HIS A 112 ZN ZN A 405 1555 2555 2.11 LINK OE1 GLU A 118 ZN ZN A 405 1555 1555 1.97 LINK OE1 GLU A 118 ZN ZN A 405 1555 2555 1.97 LINK ND1 HIS A 135 ZN ZN A 402 1555 1555 2.15 LINK OD2 ASP A 154 ZN ZN A 402 1555 1555 1.94 LINK OD1 ASP A 156 CA CA A 408 1555 1555 2.15 LINK NE2 HIS A 170 ZN ZN A 403 1555 1555 2.07 LINK NE2 HIS A 174 ZN ZN A 403 1555 1555 2.14 LINK OE1 GLU A 194 ZN ZN A 403 1555 1555 1.96 LINK OD2 ASP A 224 CA CA A 409 1555 1555 2.10 LINK OD2 ASP A 254 ZN ZN A 401 1555 1555 2.16 LINK ND1 HIS A 256 ZN ZN A 401 1555 1555 2.16 LINK NE2 HIS A 264 ZN ZN A 404 1555 1555 2.07 LINK OXT ASP A 336 ZN ZN A 401 1555 4555 1.91 LINK ZN ZN A 401 O HOH A 513 1555 1555 2.02 LINK ZN ZN A 401 O HOH A 629 1555 4455 1.92 LINK ZN ZN A 402 O HOH A 504 1555 1555 2.66 LINK ZN ZN A 403 O ACT A 406 1555 1555 2.64 LINK ZN ZN A 403 OXT ACT A 406 1555 1555 1.93 LINK ZN ZN A 404 OXT ACT A 407 1555 1555 2.43 LINK ZN ZN A 404 O ACT A 407 1555 1555 1.95 LINK ZN ZN A 404 O HOH A 564 1555 1555 1.98 LINK ZN ZN A 404 O HOH A 768 1555 1555 2.03 LINK CA CA A 408 O HOH A 549 1555 4454 2.20 LINK CA CA A 408 O HOH A 618 1555 1555 2.21 LINK CA CA A 408 O HOH A 757 1555 4454 2.09 LINK CA CA A 408 O HOH A 765 1555 4454 2.27 LINK CA CA A 408 O HOH A 770 1555 4454 2.26 LINK CA CA A 409 O HOH A 522 1555 1555 2.17 LINK CA CA A 409 O HOH A 536 1555 4454 2.12 LINK CA CA A 409 O HOH A 583 1555 4454 2.20 LINK CA CA A 409 O HOH A 747 1555 1555 2.17 LINK CA CA A 409 O HOH A 806 1555 1555 2.06 LINK CA CA A 410 O HOH A 539 1555 1555 2.18 LINK CA CA A 410 O HOH A 577 1555 1555 2.16 LINK CA CA A 410 O HOH A 658 1555 1555 2.10 LINK CA CA A 410 O HOH A 726 1555 1555 2.20 LINK CA CA A 410 O HOH A 820 1555 1555 2.14 LINK CA CA A 411 O HOH A 503 1555 1555 2.28 LINK CA CA A 411 O HOH A 524 1555 4455 2.30 LINK CA CA A 411 O HOH A 592 1555 4455 2.14 LINK CA CA A 411 O HOH A 687 1555 1555 2.22 LINK CA CA A 411 O HOH A 773 1555 4455 2.37 SITE 1 AC1 5 ASP A 254 HIS A 256 ASP A 336 HOH A 513 SITE 2 AC1 5 HOH A 629 SITE 1 AC2 5 HIS A 53 ASP A 90 HIS A 135 ASP A 154 SITE 2 AC2 5 HOH A 504 SITE 1 AC3 5 HIS A 170 HIS A 174 TYR A 185 GLU A 194 SITE 2 AC3 5 ACT A 406 SITE 1 AC4 4 HIS A 264 ACT A 407 HOH A 564 HOH A 768 SITE 1 AC5 2 HIS A 112 GLU A 118 SITE 1 AC6 9 ALA A 143 HIS A 170 GLU A 171 HIS A 174 SITE 2 AC6 9 TYR A 185 GLU A 194 HIS A 256 ZN A 403 SITE 3 AC6 9 HOH A 727 SITE 1 AC7 6 ARG A 89 HIS A 264 GLU A 325 ZN A 404 SITE 2 AC7 6 HOH A 509 HOH A 564 SITE 1 AC8 6 ASP A 156 HOH A 549 HOH A 618 HOH A 757 SITE 2 AC8 6 HOH A 765 HOH A 770 SITE 1 AC9 6 ASP A 224 HOH A 522 HOH A 536 HOH A 583 SITE 2 AC9 6 HOH A 747 HOH A 806 SITE 1 AD1 6 GLU A 42 HOH A 539 HOH A 577 HOH A 658 SITE 2 AD1 6 HOH A 726 HOH A 820 SITE 1 AD2 7 LYS A 148 ASP A 247 HOH A 503 HOH A 524 SITE 2 AD2 7 HOH A 592 HOH A 687 HOH A 773 CRYST1 68.262 108.213 47.390 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014649 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021101 0.00000