HEADER TRANSFERASE 13-MAR-20 6YAT TITLE CRYSTAL STRUCTURE OF STK4 (MST1) IN COMPLEX WITH COMPOUND 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAMMALIAN STE20-LIKE PROTEIN KINASE 1,MST-1,STE20-LIKE COMPND 5 KINASE MST1,SERINE/THREONINE-PROTEIN KINASE KRS-2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STK4, KRS2, MST1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, MST1, STK4, HIPPO PATHWAY, CHEMICAL PROBE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,N.BATA,A.S.LIMPERT,L.J.LAMBERT,N.A.BAKAS,N.D.P.COSFORD, AUTHOR 2 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6YAT 1 REMARK REVDAT 3 09-FEB-22 6YAT 1 JRNL REVDAT 2 08-DEC-21 6YAT 1 JRNL REVDAT 1 29-APR-20 6YAT 0 JRNL AUTH N.BATA,A.CHAIKUAD,N.A.BAKAS,A.S.LIMPERT,L.J.LAMBERT, JRNL AUTH 2 D.J.SHEFFLER,L.M.BERGER,G.LIU,C.YUAN,L.WANG,Y.PENG,J.DONG, JRNL AUTH 3 M.CELERIDAD,F.LAYNG,S.KNAPP,N.D.P.COSFORD JRNL TITL INHIBITORS OF THE HIPPO PATHWAY KINASES STK3/MST2 AND JRNL TITL 2 STK4/MST1 HAVE UTILITY FOR THE TREATMENT OF ACUTE MYELOID JRNL TITL 3 LEUKEMIA. JRNL REF J.MED.CHEM. V. 65 1352 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34807584 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00804 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1727 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4555 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4235 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6178 ; 1.094 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9831 ; 1.069 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 7.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;32.027 ;23.300 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;16.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5149 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 871 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 29 306 B 29 306 8092 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5751 4.2141 22.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.4650 T22: 0.3663 REMARK 3 T33: 0.0526 T12: 0.0567 REMARK 3 T13: 0.0821 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 1.4594 L22: 1.5726 REMARK 3 L33: 0.6764 L12: 0.1289 REMARK 3 L13: 0.1702 L23: -0.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.2360 S12: 0.0243 S13: -0.0333 REMARK 3 S21: -0.0608 S22: -0.1972 S23: -0.2429 REMARK 3 S31: -0.1505 S32: -0.3375 S33: -0.0388 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4420 35.2439 39.1589 REMARK 3 T TENSOR REMARK 3 T11: 0.9801 T22: 0.2585 REMARK 3 T33: 0.8150 T12: -0.2956 REMARK 3 T13: 0.5979 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.4763 L22: 2.2471 REMARK 3 L33: 8.7641 L12: -0.2269 REMARK 3 L13: -1.5352 L23: 0.5120 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: -0.1869 S13: 0.2465 REMARK 3 S21: 0.9091 S22: 0.0218 S23: 0.3563 REMARK 3 S31: 0.4683 S32: -0.0218 S33: -0.2424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 307 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5102 37.1565 18.3739 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.0827 REMARK 3 T33: 0.8724 T12: 0.0079 REMARK 3 T13: -0.0006 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.3406 L22: 2.9470 REMARK 3 L33: 1.2747 L12: 1.7469 REMARK 3 L13: -0.7143 L23: -0.3182 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -0.0101 S13: 0.3997 REMARK 3 S21: 0.1916 S22: -0.1135 S23: 1.0786 REMARK 3 S31: 0.1085 S32: -0.1233 S33: -0.0041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 11 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.93500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3COM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M AMMONIUM SULFATE, 0.1 M LITHIUM REMARK 280 SULFATE AND 0.1 M CAPS, PH 11.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.74300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.84000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.87150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.84000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.61450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.87150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.61450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.74300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ARG A 12 REMARK 465 GLN A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 LYS A 16 REMARK 465 LEU A 17 REMARK 465 GLN A 309 REMARK 465 ARG A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 GLY A 313 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 GLN B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 ASN B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 ARG B 11 REMARK 465 ARG B 12 REMARK 465 GLN B 13 REMARK 465 LEU B 14 REMARK 465 LYS B 15 REMARK 465 LYS B 16 REMARK 465 LEU B 17 REMARK 465 ASP B 18 REMARK 465 GLU B 19 REMARK 465 ASP B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 465 THR B 23 REMARK 465 LYS B 24 REMARK 465 GLN B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 SER B 65 REMARK 465 ASP B 66 REMARK 465 LEU B 67 REMARK 465 GLN B 308 REMARK 465 GLN B 309 REMARK 465 ARG B 310 REMARK 465 GLU B 311 REMARK 465 GLU B 312 REMARK 465 GLY B 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 18 CG OD1 OD2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 VAL B 29 CG1 CG2 REMARK 470 PHE B 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 TYR B 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 49 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 GLN B 60 CG CD OE1 NE2 REMARK 470 VAL B 61 CG1 CG2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ILE B 74 CG1 CG2 CD1 REMARK 470 TYR B 92 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ASN B 95 CG OD1 ND2 REMARK 470 THR B 96 OG1 CG2 REMARK 470 ASP B 97 CG OD1 OD2 REMARK 470 LEU B 98 CG CD1 CD2 REMARK 470 TRP B 99 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 99 CZ3 CH2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 LEU B 302 CG CD1 CD2 REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 ARG B 304 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 305 CG CD OE1 NE2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 SER B 307 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 33 -136.24 -111.76 REMARK 500 HIS A 49 99.69 -65.06 REMARK 500 ASN A 95 -115.45 64.65 REMARK 500 ARG A 148 -4.12 83.05 REMARK 500 ASP A 167 79.28 79.45 REMARK 500 ASN A 202 -155.78 -138.39 REMARK 500 LEU A 262 49.72 -94.80 REMARK 500 SER A 307 75.79 -115.85 REMARK 500 LEU B 33 -138.55 -111.67 REMARK 500 ASN B 95 -117.30 63.84 REMARK 500 ARG B 148 -0.91 82.91 REMARK 500 ASP B 167 80.56 77.71 REMARK 500 ASN B 202 -155.97 -139.55 REMARK 500 LEU B 262 49.73 -94.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3FX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OJ5 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OJ5 B 401 DBREF 6YAT A 1 311 UNP Q13043 STK4_HUMAN 1 311 DBREF 6YAT B 1 311 UNP Q13043 STK4_HUMAN 1 311 SEQADV 6YAT SER A 0 UNP Q13043 EXPRESSION TAG SEQADV 6YAT GLU A 312 UNP Q13043 EXPRESSION TAG SEQADV 6YAT GLY A 313 UNP Q13043 EXPRESSION TAG SEQADV 6YAT SER B 0 UNP Q13043 EXPRESSION TAG SEQADV 6YAT GLU B 312 UNP Q13043 EXPRESSION TAG SEQADV 6YAT GLY B 313 UNP Q13043 EXPRESSION TAG SEQRES 1 A 314 SER MET GLU THR VAL GLN LEU ARG ASN PRO PRO ARG ARG SEQRES 2 A 314 GLN LEU LYS LYS LEU ASP GLU ASP SER LEU THR LYS GLN SEQRES 3 A 314 PRO GLU GLU VAL PHE ASP VAL LEU GLU LYS LEU GLY GLU SEQRES 4 A 314 GLY SER TYR GLY SER VAL TYR LYS ALA ILE HIS LYS GLU SEQRES 5 A 314 THR GLY GLN ILE VAL ALA ILE LYS GLN VAL PRO VAL GLU SEQRES 6 A 314 SER ASP LEU GLN GLU ILE ILE LYS GLU ILE SER ILE MET SEQRES 7 A 314 GLN GLN CYS ASP SER PRO HIS VAL VAL LYS TYR TYR GLY SEQRES 8 A 314 SER TYR PHE LYS ASN THR ASP LEU TRP ILE VAL MET GLU SEQRES 9 A 314 TYR CYS GLY ALA GLY SER VAL SER ASP ILE ILE ARG LEU SEQRES 10 A 314 ARG ASN LYS THR LEU THR GLU ASP GLU ILE ALA THR ILE SEQRES 11 A 314 LEU GLN SER THR LEU LYS GLY LEU GLU TYR LEU HIS PHE SEQRES 12 A 314 MET ARG LYS ILE HIS ARG ASP ILE LYS ALA GLY ASN ILE SEQRES 13 A 314 LEU LEU ASN THR GLU GLY HIS ALA LYS LEU ALA ASP PHE SEQRES 14 A 314 GLY VAL ALA GLY GLN LEU THR ASP TPO MET ALA LYS ARG SEQRES 15 A 314 ASN TPO VAL ILE GLY THR PRO PHE TRP MET ALA PRO GLU SEQRES 16 A 314 VAL ILE GLN GLU ILE GLY TYR ASN CYS VAL ALA ASP ILE SEQRES 17 A 314 TRP SER LEU GLY ILE THR ALA ILE GLU MET ALA GLU GLY SEQRES 18 A 314 LYS PRO PRO TYR ALA ASP ILE HIS PRO MET ARG ALA ILE SEQRES 19 A 314 PHE MET ILE PRO THR ASN PRO PRO PRO THR PHE ARG LYS SEQRES 20 A 314 PRO GLU LEU TRP SER ASP ASN PHE THR ASP PHE VAL LYS SEQRES 21 A 314 GLN CYS LEU VAL LYS SER PRO GLU GLN ARG ALA THR ALA SEQRES 22 A 314 THR GLN LEU LEU GLN HIS PRO PHE VAL ARG SER ALA LYS SEQRES 23 A 314 GLY VAL SER ILE LEU ARG ASP LEU ILE ASN GLU ALA MET SEQRES 24 A 314 ASP VAL LYS LEU LYS ARG GLN GLU SER GLN GLN ARG GLU SEQRES 25 A 314 GLU GLY SEQRES 1 B 314 SER MET GLU THR VAL GLN LEU ARG ASN PRO PRO ARG ARG SEQRES 2 B 314 GLN LEU LYS LYS LEU ASP GLU ASP SER LEU THR LYS GLN SEQRES 3 B 314 PRO GLU GLU VAL PHE ASP VAL LEU GLU LYS LEU GLY GLU SEQRES 4 B 314 GLY SER TYR GLY SER VAL TYR LYS ALA ILE HIS LYS GLU SEQRES 5 B 314 THR GLY GLN ILE VAL ALA ILE LYS GLN VAL PRO VAL GLU SEQRES 6 B 314 SER ASP LEU GLN GLU ILE ILE LYS GLU ILE SER ILE MET SEQRES 7 B 314 GLN GLN CYS ASP SER PRO HIS VAL VAL LYS TYR TYR GLY SEQRES 8 B 314 SER TYR PHE LYS ASN THR ASP LEU TRP ILE VAL MET GLU SEQRES 9 B 314 TYR CYS GLY ALA GLY SER VAL SER ASP ILE ILE ARG LEU SEQRES 10 B 314 ARG ASN LYS THR LEU THR GLU ASP GLU ILE ALA THR ILE SEQRES 11 B 314 LEU GLN SER THR LEU LYS GLY LEU GLU TYR LEU HIS PHE SEQRES 12 B 314 MET ARG LYS ILE HIS ARG ASP ILE LYS ALA GLY ASN ILE SEQRES 13 B 314 LEU LEU ASN THR GLU GLY HIS ALA LYS LEU ALA ASP PHE SEQRES 14 B 314 GLY VAL ALA GLY GLN LEU THR ASP TPO MET ALA LYS ARG SEQRES 15 B 314 ASN TPO VAL ILE GLY THR PRO PHE TRP MET ALA PRO GLU SEQRES 16 B 314 VAL ILE GLN GLU ILE GLY TYR ASN CYS VAL ALA ASP ILE SEQRES 17 B 314 TRP SER LEU GLY ILE THR ALA ILE GLU MET ALA GLU GLY SEQRES 18 B 314 LYS PRO PRO TYR ALA ASP ILE HIS PRO MET ARG ALA ILE SEQRES 19 B 314 PHE MET ILE PRO THR ASN PRO PRO PRO THR PHE ARG LYS SEQRES 20 B 314 PRO GLU LEU TRP SER ASP ASN PHE THR ASP PHE VAL LYS SEQRES 21 B 314 GLN CYS LEU VAL LYS SER PRO GLU GLN ARG ALA THR ALA SEQRES 22 B 314 THR GLN LEU LEU GLN HIS PRO PHE VAL ARG SER ALA LYS SEQRES 23 B 314 GLY VAL SER ILE LEU ARG ASP LEU ILE ASN GLU ALA MET SEQRES 24 B 314 ASP VAL LYS LEU LYS ARG GLN GLU SER GLN GLN ARG GLU SEQRES 25 B 314 GLU GLY MODRES 6YAT TPO A 177 THR MODIFIED RESIDUE MODRES 6YAT TPO A 183 THR MODIFIED RESIDUE MODRES 6YAT TPO B 177 THR MODIFIED RESIDUE MODRES 6YAT TPO B 183 THR MODIFIED RESIDUE HET TPO A 177 11 HET TPO A 183 11 HET TPO B 177 11 HET TPO B 183 11 HET 3FX A 401 15 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET OJ5 A 409 22 HET OJ5 B 401 22 HETNAM TPO PHOSPHOTHREONINE HETNAM 3FX (2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC HETNAM 2 3FX ACID HETNAM GOL GLYCEROL HETNAM OJ5 4-[5-(3-CHLOROPHENYL)-7~{H}-PYRROLO[2,3-D]PYRIMIDIN-4- HETNAM 2 OJ5 YL]MORPHOLINE HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 4(C4 H10 N O6 P) FORMUL 3 3FX C9 H19 N O4 S FORMUL 4 GOL 7(C3 H8 O3) FORMUL 11 OJ5 2(C16 H15 CL N4 O) FORMUL 13 HOH *44(H2 O) HELIX 1 AA1 GLN A 25 VAL A 29 1 5 HELIX 2 AA2 ASP A 66 CYS A 80 1 15 HELIX 3 AA3 VAL A 110 ASN A 118 1 9 HELIX 4 AA4 THR A 122 MET A 143 1 22 HELIX 5 AA5 LYS A 151 GLY A 153 5 3 HELIX 6 AA6 THR A 187 MET A 191 5 5 HELIX 7 AA7 ALA A 192 GLN A 197 1 6 HELIX 8 AA8 VAL A 204 GLY A 220 1 17 HELIX 9 AA9 HIS A 228 ILE A 236 1 9 HELIX 10 AB1 LYS A 246 TRP A 250 5 5 HELIX 11 AB2 SER A 251 LEU A 262 1 12 HELIX 12 AB3 THR A 271 LEU A 276 1 6 HELIX 13 AB4 HIS A 278 SER A 283 1 6 HELIX 14 AB5 GLY A 286 ILE A 289 5 4 HELIX 15 AB6 LEU A 290 GLN A 305 1 16 HELIX 16 AB7 GLU B 69 CYS B 80 1 12 HELIX 17 AB8 VAL B 110 ASN B 118 1 9 HELIX 18 AB9 THR B 122 MET B 143 1 22 HELIX 19 AC1 LYS B 151 GLY B 153 5 3 HELIX 20 AC2 THR B 187 MET B 191 5 5 HELIX 21 AC3 ALA B 192 GLN B 197 1 6 HELIX 22 AC4 VAL B 204 GLY B 220 1 17 HELIX 23 AC5 HIS B 228 ILE B 236 1 9 HELIX 24 AC6 LYS B 246 TRP B 250 5 5 HELIX 25 AC7 SER B 251 LEU B 262 1 12 HELIX 26 AC8 THR B 271 LEU B 276 1 6 HELIX 27 AC9 HIS B 278 SER B 283 1 6 HELIX 28 AD1 GLY B 286 ILE B 289 5 4 HELIX 29 AD2 LEU B 290 GLN B 305 1 16 SHEET 1 AA1 5 PHE A 30 GLY A 39 0 SHEET 2 AA1 5 GLY A 42 HIS A 49 -1 O VAL A 44 N LEU A 36 SHEET 3 AA1 5 ILE A 55 VAL A 61 -1 O GLN A 60 N SER A 43 SHEET 4 AA1 5 ASP A 97 MET A 102 -1 O MET A 102 N ALA A 57 SHEET 5 AA1 5 TYR A 88 LYS A 94 -1 N TYR A 92 O TRP A 99 SHEET 1 AA2 3 GLY A 108 SER A 109 0 SHEET 2 AA2 3 ILE A 155 LEU A 157 -1 O LEU A 157 N GLY A 108 SHEET 3 AA2 3 ALA A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA3 2 LYS A 145 ILE A 146 0 SHEET 2 AA3 2 GLY A 172 GLN A 173 -1 O GLY A 172 N ILE A 146 SHEET 1 AA4 5 ASP B 31 GLY B 39 0 SHEET 2 AA4 5 GLY B 42 ILE B 48 -1 O VAL B 44 N LEU B 36 SHEET 3 AA4 5 ILE B 55 PRO B 62 -1 O GLN B 60 N SER B 43 SHEET 4 AA4 5 ASP B 97 GLU B 103 -1 O MET B 102 N ALA B 57 SHEET 5 AA4 5 TYR B 88 LYS B 94 -1 N LYS B 94 O ASP B 97 SHEET 1 AA5 3 GLY B 108 SER B 109 0 SHEET 2 AA5 3 ILE B 155 LEU B 157 -1 O LEU B 157 N GLY B 108 SHEET 3 AA5 3 ALA B 163 LEU B 165 -1 O LYS B 164 N LEU B 156 SHEET 1 AA6 2 LYS B 145 ILE B 146 0 SHEET 2 AA6 2 GLY B 172 GLN B 173 -1 O GLY B 172 N ILE B 146 LINK C ASP A 176 N TPO A 177 1555 1555 1.34 LINK C TPO A 177 N MET A 178 1555 1555 1.35 LINK C ASN A 182 N TPO A 183 1555 1555 1.34 LINK C TPO A 183 N VAL A 184 1555 1555 1.34 LINK C ASP B 176 N TPO B 177 1555 1555 1.34 LINK C TPO B 177 N MET B 178 1555 1555 1.34 LINK C ASN B 182 N TPO B 183 1555 1555 1.34 LINK C TPO B 183 N VAL B 184 1555 1555 1.34 SITE 1 AC1 5 VAL A 29 PHE A 30 HIS A 49 TYR A 92 SITE 2 AC1 5 GOL A 403 SITE 1 AC2 3 SER A 111 LYS A 151 HOH A 502 SITE 1 AC3 5 TYR A 89 GLY A 90 SER A 91 TYR A 92 SITE 2 AC3 5 3FX A 401 SITE 1 AC4 3 VAL A 32 TYR A 45 GLN A 60 SITE 1 AC5 2 HIS A 84 LYS A 135 SITE 1 AC6 5 TYR A 104 GLY A 106 ASN A 158 THR A 159 SITE 2 AC6 5 HOH A 507 SITE 1 AC7 3 SER A 251 ASP A 252 LYS A 285 SITE 1 AC8 6 THR A 122 GLU A 123 LEU A 249 TRP A 250 SITE 2 AC8 6 SER A 288 ILE A 289 SITE 1 AC9 10 GLY A 37 GLU A 38 ALA A 57 GLU A 73 SITE 2 AC9 10 GLU A 103 CYS A 105 ASP A 112 LEU A 156 SITE 3 AC9 10 ASP A 167 HOH A 532 SITE 1 AD1 10 LEU B 36 GLY B 37 VAL B 44 ALA B 57 SITE 2 AD1 10 GLU B 103 TYR B 104 CYS B 105 ASP B 112 SITE 3 AD1 10 LEU B 156 ASP B 167 CRYST1 111.680 111.680 171.486 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005831 0.00000