data_6YB1 # _entry.id 6YB1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.345 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6YB1 WWPDB D_1292107197 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YB1 _pdbx_database_status.recvd_initial_deposition_date 2020-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kratochvil, H.T.' 1 0000-0001-8039-6823 'Liu, L.' 2 0000-0003-0514-281X 'Scott, A.J.' 3 0000-0003-0198-0701 'Woolfson, D.N.' 4 0000-0002-0394-3202 'DeGrado, W.F.' 5 0000-0003-4745-263X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1755-4349 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 643 _citation.page_last 650 _citation.title 'Constructing ion channels from water-soluble alpha-helical barrels.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41557-021-00688-0 _citation.pdbx_database_id_PubMed 33972753 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scott, A.J.' 1 ? primary 'Niitsu, A.' 2 ? primary 'Kratochvil, H.T.' 3 ? primary 'Lang, E.J.M.' 4 ? primary 'Sengel, J.T.' 5 ? primary 'Dawson, W.M.' 6 ? primary 'Mahendran, K.R.' 7 ? primary 'Mravic, M.' 8 ? primary 'Thomson, A.R.' 9 ? primary 'Brady, R.L.' 10 ? primary 'Liu, L.' 11 ? primary 'Mulholland, A.J.' 12 ? primary 'Bayley, H.' 13 ? primary 'DeGrado, W.F.' 14 ? primary 'Wallace, M.I.' 15 ? primary 'Woolfson, D.N.' 16 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6YB1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.864 _cell.length_a_esd ? _cell.length_b 47.864 _cell.length_b_esd ? _cell.length_c 103.153 _cell.length_c_esd ? _cell.volume 204658.810 _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall 'P 31 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn K2-CCTM-VbIc 3070.605 4 ? ? ? ? 2 non-polymer syn GLYCINE 75.067 2 ? ? ? ? 3 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 2 ? ? ? ? 4 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GKKSAWATVISALATVISALATVISAWATVG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XGKKSAWATVISALATVISALATVISAWATVGX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 LYS n 1 4 LYS n 1 5 SER n 1 6 ALA n 1 7 TRP n 1 8 ALA n 1 9 THR n 1 10 VAL n 1 11 ILE n 1 12 SER n 1 13 ALA n 1 14 LEU n 1 15 ALA n 1 16 THR n 1 17 VAL n 1 18 ILE n 1 19 SER n 1 20 ALA n 1 21 LEU n 1 22 ALA n 1 23 THR n 1 24 VAL n 1 25 ILE n 1 26 SER n 1 27 ALA n 1 28 TRP n 1 29 ALA n 1 30 THR n 1 31 VAL n 1 32 GLY n 1 33 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6YB1 _struct_ref.pdbx_db_accession 6YB1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6YB1 A 1 ? 33 ? 6YB1 0 ? 32 ? 0 32 2 1 6YB1 B 1 ? 33 ? 6YB1 0 ? 32 ? 0 32 3 1 6YB1 C 1 ? 33 ? 6YB1 0 ? 32 ? 0 32 4 1 6YB1 D 1 ? 33 ? 6YB1 0 ? 32 ? 0 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YB1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 10 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Monoolein lipidic cubic phase, 0.05 M Glycine, 55% v/v PEG400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details Cryostream _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-12-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11582 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.11582 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 40.57 _reflns.entry_id 6YB1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 41.5 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7587 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.0 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.84 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 702 _reflns_shell.percent_possible_all 99.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.275 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.809 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 60.20 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6YB1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 34.38 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7526 _refine.ls_number_reflns_R_free 425 _refine.ls_number_reflns_R_work 7101 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.26 _refine.ls_percent_reflns_R_free 5.65 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1817 _refine.ls_R_factor_R_free 0.2095 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1802 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 0.6000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.0000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.5024 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2107 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 34.38 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 957 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 872 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0043 ? 942 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6365 ? 1283 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0354 ? 169 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0038 ? 139 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.2873 ? 319 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.15 2.46 . . 131 2304 98.15 . . . 0.2491 . 0.1900 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.46 3.10 . . 166 2345 99.80 . . . 0.1998 . 0.1704 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.10 34.38 . . 128 2452 99.81 . . . 0.2060 . 0.1818 . . . . . . . . . . . # loop_ _struct_ncs_dom.id _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.details 1 1 ? 2 1 ? 3 1 ? 4 1 ? # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 A 1 A 24 ;(chain 'A' and (resid 0 through 24 or resid 26 through 32)) ; 1 ? ? ? ? ? ? ? ? ? 1 1 A 26 A 30 ;(chain 'A' and (resid 0 through 24 or resid 26 through 32)) ; 2 ? ? ? ? ? ? ? ? ? 1 2 B 1 B 24 ;(chain 'B' and (resid 0 through 24 or resid 26 through 32)) ; 3 ? ? ? ? ? ? ? ? ? 1 2 B 26 B 30 ;(chain 'B' and (resid 0 through 24 or resid 26 through 32)) ; 4 ? ? ? ? ? ? ? ? ? 1 3 C 1 C 24 ;(chain 'C' and (resid 0 through 24 or resid 26 through 32)) ; 5 ? ? ? ? ? ? ? ? ? 1 3 C 26 C 30 ;(chain 'C' and (resid 0 through 24 or resid 26 through 32)) ; 6 ? ? ? ? ? ? ? ? ? 1 4 D 1 D 24 ;(chain 'D' and (resid 0 through 24 or resid 26 through 32)) ; 7 ? ? ? ? ? ? ? ? ? 1 4 D 26 D 30 ;(chain 'D' and (resid 0 through 24 or resid 26 through 32)) ; 8 ? ? ? ? ? ? ? ? ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 6YB1 _struct.title 'Crystal structure of an antiparallel octameric transmembrane coiled coil K2-CCTM-VbIc' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YB1 _struct_keywords.text 'de novo protein, antiparallel coiled coil, de novo membrane protein, coiled coil' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? GLY A 32 ? GLY A 1 GLY A 31 1 ? 31 HELX_P HELX_P2 AA2 GLY B 2 ? GLY B 32 ? GLY B 1 GLY B 31 1 ? 31 HELX_P HELX_P3 AA3 GLY C 2 ? GLY C 32 ? GLY C 1 GLY C 31 1 ? 31 HELX_P HELX_P4 AA4 GLY D 2 ? GLY D 32 ? GLY D 1 GLY D 31 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A GLY 32 C ? ? ? 1_555 A NH2 33 N ? ? A GLY 31 A NH2 32 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? B GLY 32 C ? ? ? 1_555 B NH2 33 N ? ? B GLY 31 B NH2 32 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C GLY 2 N ? ? C ACE 0 C GLY 1 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? C GLY 32 C ? ? ? 1_555 C NH2 33 N ? ? C GLY 31 C NH2 32 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D GLY 2 N ? ? D ACE 0 D GLY 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? D GLY 32 C ? ? ? 1_555 D NH2 33 N ? ? D GLY 31 D NH2 32 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B GLY 101 ? 1 'binding site for residue GLY B 101' AC2 Software C 2PE 101 ? 4 'binding site for residue 2PE C 101' AC3 Software C GLY 102 ? 1 'binding site for residue GLY C 102' AC4 Software D 2PE 201 ? 4 'binding site for residue 2PE D 201' AC5 Software B ACE 0 ? 5 'binding site for Di-peptide ACE B 0 and GLY B 1' AC6 Software B GLY 31 ? 6 'binding site for Di-peptide GLY B 31 and NH2 B 32' AC7 Software C ACE 0 ? 6 'binding site for Di-peptide ACE C 0 and GLY C 1' AC8 Software C GLY 31 ? 5 'binding site for Di-peptide GLY C 31 and NH2 C 32' AC9 Software D ACE 0 ? 5 'binding site for Di-peptide ACE D 0 and GLY D 1' AD1 Software D GLY 31 ? 5 'binding site for Di-peptide GLY D 31 and NH2 D 32' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ALA B 6 ? ALA B 5 . ? 1_555 ? 2 AC2 4 ALA C 13 ? ALA C 12 . ? 5_655 ? 3 AC2 4 ALA C 13 ? ALA C 12 . ? 1_555 ? 4 AC2 4 VAL C 17 ? VAL C 16 . ? 1_555 ? 5 AC2 4 VAL C 17 ? VAL C 16 . ? 5_655 ? 6 AC3 1 HOH K . ? HOH C 201 . ? 1_555 ? 7 AC4 4 VAL A 10 ? VAL A 9 . ? 6_565 ? 8 AC4 4 VAL A 17 ? VAL A 16 . ? 6_565 ? 9 AC4 4 VAL A 24 ? VAL A 23 . ? 6_565 ? 10 AC4 4 TRP D 28 ? TRP D 27 . ? 1_555 ? 11 AC5 5 LYS B 3 ? LYS B 2 . ? 1_555 ? 12 AC5 5 LYS B 4 ? LYS B 3 . ? 1_555 ? 13 AC5 5 SER B 5 ? SER B 4 . ? 1_555 ? 14 AC5 5 ALA B 6 ? ALA B 5 . ? 1_555 ? 15 AC5 5 VAL B 31 ? VAL B 30 . ? 1_445 ? 16 AC6 6 LYS A 4 ? LYS A 3 . ? 1_555 ? 17 AC6 6 LYS B 3 ? LYS B 2 . ? 1_665 ? 18 AC6 6 TRP B 28 ? TRP B 27 . ? 1_555 ? 19 AC6 6 ALA B 29 ? ALA B 28 . ? 1_555 ? 20 AC6 6 THR B 30 ? THR B 29 . ? 1_555 ? 21 AC6 6 VAL B 31 ? VAL B 30 . ? 1_555 ? 22 AC7 6 GLY A 32 ? GLY A 31 . ? 1_665 ? 23 AC7 6 NH2 A 33 ? NH2 A 32 . ? 1_665 ? 24 AC7 6 LYS C 3 ? LYS C 2 . ? 1_555 ? 25 AC7 6 LYS C 4 ? LYS C 3 . ? 1_555 ? 26 AC7 6 SER C 5 ? SER C 4 . ? 1_555 ? 27 AC7 6 ALA C 6 ? ALA C 5 . ? 1_555 ? 28 AC8 5 TRP C 28 ? TRP C 27 . ? 1_555 ? 29 AC8 5 ALA C 29 ? ALA C 28 . ? 1_555 ? 30 AC8 5 THR C 30 ? THR C 29 . ? 1_555 ? 31 AC8 5 VAL C 31 ? VAL C 30 . ? 1_555 ? 32 AC8 5 LYS D 4 ? LYS D 3 . ? 1_555 ? 33 AC9 5 ALA A 29 ? ALA A 28 . ? 1_555 ? 34 AC9 5 LYS D 3 ? LYS D 2 . ? 1_555 ? 35 AC9 5 LYS D 4 ? LYS D 3 . ? 1_555 ? 36 AC9 5 SER D 5 ? SER D 4 . ? 1_555 ? 37 AC9 5 ALA D 6 ? ALA D 5 . ? 1_555 ? 38 AD1 5 LYS C 4 ? LYS C 3 . ? 1_555 ? 39 AD1 5 TRP D 28 ? TRP D 27 . ? 1_555 ? 40 AD1 5 ALA D 29 ? ALA D 28 . ? 1_555 ? 41 AD1 5 THR D 30 ? THR D 29 . ? 1_555 ? 42 AD1 5 VAL D 31 ? VAL D 30 . ? 1_555 ? # _atom_sites.entry_id 6YB1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.020893 _atom_sites.fract_transf_matrix[1][2] 0.012062 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024125 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009694 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 TRP 7 6 6 TRP TRP A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 TRP 28 27 27 TRP TRP A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 NH2 33 32 32 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLY 2 1 1 GLY GLY B . n B 1 3 LYS 3 2 2 LYS LYS B . n B 1 4 LYS 4 3 3 LYS LYS B . n B 1 5 SER 5 4 4 SER SER B . n B 1 6 ALA 6 5 5 ALA ALA B . n B 1 7 TRP 7 6 6 TRP TRP B . n B 1 8 ALA 8 7 7 ALA ALA B . n B 1 9 THR 9 8 8 THR THR B . n B 1 10 VAL 10 9 9 VAL VAL B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 SER 12 11 11 SER SER B . n B 1 13 ALA 13 12 12 ALA ALA B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 ALA 15 14 14 ALA ALA B . n B 1 16 THR 16 15 15 THR THR B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 ILE 18 17 17 ILE ILE B . n B 1 19 SER 19 18 18 SER SER B . n B 1 20 ALA 20 19 19 ALA ALA B . n B 1 21 LEU 21 20 20 LEU LEU B . n B 1 22 ALA 22 21 21 ALA ALA B . n B 1 23 THR 23 22 22 THR THR B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 ILE 25 24 24 ILE ILE B . n B 1 26 SER 26 25 25 SER SER B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 TRP 28 27 27 TRP TRP B . n B 1 29 ALA 29 28 28 ALA ALA B . n B 1 30 THR 30 29 29 THR THR B . n B 1 31 VAL 31 30 30 VAL VAL B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 NH2 33 32 32 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLY 2 1 1 GLY GLY C . n C 1 3 LYS 3 2 2 LYS LYS C . n C 1 4 LYS 4 3 3 LYS LYS C . n C 1 5 SER 5 4 4 SER SER C . n C 1 6 ALA 6 5 5 ALA ALA C . n C 1 7 TRP 7 6 6 TRP TRP C . n C 1 8 ALA 8 7 7 ALA ALA C . n C 1 9 THR 9 8 8 THR THR C . n C 1 10 VAL 10 9 9 VAL VAL C . n C 1 11 ILE 11 10 10 ILE ILE C . n C 1 12 SER 12 11 11 SER SER C . n C 1 13 ALA 13 12 12 ALA ALA C . n C 1 14 LEU 14 13 13 LEU LEU C . n C 1 15 ALA 15 14 14 ALA ALA C . n C 1 16 THR 16 15 15 THR THR C . n C 1 17 VAL 17 16 16 VAL VAL C . n C 1 18 ILE 18 17 17 ILE ILE C . n C 1 19 SER 19 18 18 SER SER C . n C 1 20 ALA 20 19 19 ALA ALA C . n C 1 21 LEU 21 20 20 LEU LEU C . n C 1 22 ALA 22 21 21 ALA ALA C . n C 1 23 THR 23 22 22 THR THR C . n C 1 24 VAL 24 23 23 VAL VAL C . n C 1 25 ILE 25 24 24 ILE ILE C . n C 1 26 SER 26 25 25 SER SER C . n C 1 27 ALA 27 26 26 ALA ALA C . n C 1 28 TRP 28 27 27 TRP TRP C . n C 1 29 ALA 29 28 28 ALA ALA C . n C 1 30 THR 30 29 29 THR THR C . n C 1 31 VAL 31 30 30 VAL VAL C . n C 1 32 GLY 32 31 31 GLY GLY C . n C 1 33 NH2 33 32 32 NH2 NH2 C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 GLY 2 1 1 GLY GLY D . n D 1 3 LYS 3 2 2 LYS LYS D . n D 1 4 LYS 4 3 3 LYS LYS D . n D 1 5 SER 5 4 4 SER SER D . n D 1 6 ALA 6 5 5 ALA ALA D . n D 1 7 TRP 7 6 6 TRP TRP D . n D 1 8 ALA 8 7 7 ALA ALA D . n D 1 9 THR 9 8 8 THR THR D . n D 1 10 VAL 10 9 9 VAL VAL D . n D 1 11 ILE 11 10 10 ILE ILE D . n D 1 12 SER 12 11 11 SER SER D . n D 1 13 ALA 13 12 12 ALA ALA D . n D 1 14 LEU 14 13 13 LEU LEU D . n D 1 15 ALA 15 14 14 ALA ALA D . n D 1 16 THR 16 15 15 THR THR D . n D 1 17 VAL 17 16 16 VAL VAL D . n D 1 18 ILE 18 17 17 ILE ILE D . n D 1 19 SER 19 18 18 SER SER D . n D 1 20 ALA 20 19 19 ALA ALA D . n D 1 21 LEU 21 20 20 LEU LEU D . n D 1 22 ALA 22 21 21 ALA ALA D . n D 1 23 THR 23 22 22 THR THR D . n D 1 24 VAL 24 23 23 VAL VAL D . n D 1 25 ILE 25 24 24 ILE ILE D . n D 1 26 SER 26 25 25 SER SER D . n D 1 27 ALA 27 26 26 ALA ALA D . n D 1 28 TRP 28 27 27 TRP TRP D . n D 1 29 ALA 29 28 28 ALA ALA D . n D 1 30 THR 30 29 29 THR THR D . n D 1 31 VAL 31 30 30 VAL VAL D . n D 1 32 GLY 32 31 31 GLY GLY D . n D 1 33 NH2 33 32 32 NH2 NH2 D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GLY 1 101 204 GLY GLY B . F 3 2PE 1 101 202 2PE 2PE C . G 2 GLY 1 102 203 GLY GLY C . H 3 2PE 1 201 201 2PE 2PE D . I 4 HOH 1 101 7 HOH HOH A . I 4 HOH 2 102 3 HOH HOH A . J 4 HOH 1 201 2 HOH HOH B . J 4 HOH 2 202 5 HOH HOH B . J 4 HOH 3 203 12 HOH HOH B . J 4 HOH 4 204 14 HOH HOH B . J 4 HOH 5 205 13 HOH HOH B . J 4 HOH 6 206 11 HOH HOH B . K 4 HOH 1 201 16 HOH HOH C . K 4 HOH 2 202 4 HOH HOH C . K 4 HOH 3 203 1 HOH HOH C . K 4 HOH 4 204 17 HOH HOH C . K 4 HOH 5 205 18 HOH HOH C . K 4 HOH 6 206 15 HOH HOH C . K 4 HOH 7 207 10 HOH HOH C . K 4 HOH 8 208 19 HOH HOH C . L 4 HOH 1 301 9 HOH HOH D . L 4 HOH 2 302 8 HOH HOH D . L 4 HOH 3 303 6 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18650 ? 1 MORE -151 ? 1 'SSA (A^2)' 9830 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_565 x,x-y+1,-z 0.5000000000 0.8660254038 0.0000000000 -23.9320000000 0.8660254038 -0.5000000000 0.0000000000 41.4514399267 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-07 2 'Structure model' 1 1 2021-05-26 3 'Structure model' 1 2 2021-07-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 27.8290883089 40.3637905574 4.96700026833 0.400098096585 ? 0.0704364456467 ? -0.0271973612171 ? 0.301364748883 ? 0.00307071218539 ? 0.297034148933 ? 8.90270048953 ? 4.1969969801 ? 1.77361774927 ? 6.39540758765 ? 1.95011517123 ? 9.20997222106 ? 0.281621586712 ? 0.216437482671 ? -0.326382659307 ? 0.529177447861 ? 0.173980609933 ? -0.244490984312 ? -0.080569376645 ? 0.386426433798 ? -0.446241766083 ? 2 'X-RAY DIFFRACTION' ? refined 26.9853264136 42.3235601461 12.2828232575 0.340080034876 ? 0.00191294593428 ? 0.022247273284 ? 0.325055734459 ? 9.34117126329e-05 ? 0.189164238437 ? 6.80761389068 ? 1.21414214268 ? 0.841962381551 ? 6.63251214943 ? 0.152641174693 ? 7.40356887115 ? -0.176329584819 ? -0.125278076004 ? -0.339218110467 ? -0.640127035199 ? 0.19998317841 ? -0.41348710331 ? -0.023000955911 ? 0.20506923625 ? -0.0618855612445 ? 3 'X-RAY DIFFRACTION' ? refined 19.8388994834 46.9033750928 10.3751477598 0.393248997243 ? 0.0133941113486 ? 0.036093552829 ? 0.411692645881 ? -0.0143549967189 ? 0.248814410898 ? 6.57703357586 ? 3.0755675729 ? -2.96584734036 ? 9.7537273501 ? -3.42458916032 ? 7.35844294179 ? -0.035683613712 ? 0.547122893239 ? 0.641065972841 ? 0.0638140962212 ? 0.69775526755 ? 0.625008837244 ? -0.306076229286 ? -0.641124492187 ? -0.722287519889 ? 4 'X-RAY DIFFRACTION' ? refined 20.8064500758 45.4572783659 2.93284078451 0.397638516482 ? 0.0660570024438 ? -0.0100778083987 ? 0.293347895779 ? -7.6200042424e-05 ? 0.230891432303 ? 8.77573323026 ? 3.27811952374 ? -1.34134822207 ? 6.50005773095 ? -1.24315068931 ? 8.90347138024 ? -0.143174159299 ? -0.20134608788 ? 0.124902406772 ? -0.137822749148 ? 0.0963537846861 ? 0.311548412694 ? -0.0129162887618 ? -0.474282708675 ? -0.0042781278744 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? 'chain A' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? 'chain B' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? 'chain C' 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? 'chain D' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? Arcimboldo ? ? ? . 4 # _pdbx_entry_details.entry_id 6YB1 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Engineering and Physical Sciences Research Council' 'United Kingdom' EP/G036764/1 1 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/J009784/1 2 'European Research Council (ERC)' 'United Kingdom' 340764 3 'European Research Council (ERC)' 'United Kingdom' 787173 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F32GM125217 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122603 6 'National Science Foundation (NSF, United States)' 'United States' 1709506 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCINE GLY 3 'NONAETHYLENE GLYCOL' 2PE 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 31 1 2' _space_group.name_Hall 'P 31 2 (x,y,z+1/3)' _space_group.IT_number 151 _space_group.crystal_system trigonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 -y,-x,-z+2/3 5 -x+y,y,-z+1/3 6 x,x-y,-z #