HEADER BIOSYNTHETIC PROTEIN 16-MAR-20 6YB8 TITLE HUMAN OCTAMERIC PAICS IN COMPLEX WITH CAIR AND SAICAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL PROTEIN ADE2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.2.6,4.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAICS, ADE2, AIRC, PAIS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO PURINE BIOSYNTHESIS, NUCLEOTIDE METABOLISM, CANCER TARGET, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SKERLOVA,J.UNTERLASS,M.GOTTMANN,E.HOMAN,T.HELLEDAY,A.S.JEMTH, AUTHOR 2 P.STENMARK REVDAT 3 24-JAN-24 6YB8 1 REMARK REVDAT 2 02-SEP-20 6YB8 1 JRNL REVDAT 1 08-JUL-20 6YB8 0 JRNL AUTH J.SKERLOVA,J.UNTERLASS,M.GOTTMANN,P.MARTTILA,E.HOMAN, JRNL AUTH 2 T.HELLEDAY,A.S.JEMTH,P.STENMARK JRNL TITL CRYSTAL STRUCTURES OF HUMAN PAICS REVEAL SUBSTRATE AND JRNL TITL 2 PRODUCT BINDING OF AN EMERGING CANCER TARGET. JRNL REF J.BIOL.CHEM. V. 295 11656 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32571877 JRNL DOI 10.1074/JBC.RA120.013695 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 452 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 2.44000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6802 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6396 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9193 ; 1.640 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14914 ; 2.340 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;36.313 ;23.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1208 ;15.894 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7447 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1327 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 425 B 12937 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 47.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.82 REMARK 200 R MERGE (I) : 0.25600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 14.31 REMARK 200 R MERGE FOR SHELL (I) : 1.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2H31 REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 MG/ML PAICS WITH 5 MM SAICAR; 0.1 M REMARK 280 MES/IMIDAZOLE PH 6.5, 10% W/V PEG 8000, 20% V/V ETHYLENE GLYCOL, REMARK 280 0.02 M SODIUM L-GLUTAMATE, 0.02 M DL-ALANINE, 0.02 M GLYCINE, REMARK 280 0.02 M DL-LYSINE HCL, AND 0.02 M DL-SERINE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.43900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.96100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.78250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.43900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.96100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.78250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.43900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.96100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.78250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.43900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.96100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.78250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 115930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 153.92200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 153.92200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 795 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 927 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 VAL B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 -145.31 -113.13 REMARK 500 THR A 78 -67.43 -104.62 REMARK 500 GLU A 117 122.81 -37.02 REMARK 500 ASP A 132 112.16 -173.77 REMARK 500 ASP A 137 73.14 62.87 REMARK 500 ALA A 206 -155.80 -149.12 REMARK 500 ASP A 207 -134.84 47.61 REMARK 500 ARG A 331 -135.48 57.82 REMARK 500 PRO A 369 154.81 -47.75 REMARK 500 ALA B 41 112.57 -160.34 REMARK 500 ASN B 48 134.61 -172.24 REMARK 500 THR B 78 -65.02 -104.80 REMARK 500 ASP B 132 107.71 -172.95 REMARK 500 ASP B 137 74.10 57.53 REMARK 500 ALA B 206 -154.56 -146.55 REMARK 500 ASP B 207 -132.51 48.23 REMARK 500 GLN B 225 122.16 -33.57 REMARK 500 ARG B 331 -136.35 56.89 REMARK 500 PRO B 369 156.83 -48.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2R A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OK8 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2R B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2R B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YB9 RELATED DB: PDB DBREF 6YB8 A 1 425 UNP P22234 PUR6_HUMAN 1 425 DBREF 6YB8 B 1 425 UNP P22234 PUR6_HUMAN 1 425 SEQRES 1 A 425 MET ALA THR ALA GLU VAL LEU ASN ILE GLY LYS LYS LEU SEQRES 2 A 425 TYR GLU GLY LYS THR LYS GLU VAL TYR GLU LEU LEU ASP SEQRES 3 A 425 SER PRO GLY LYS VAL LEU LEU GLN SER LYS ASP GLN ILE SEQRES 4 A 425 THR ALA GLY ASN ALA ALA ARG LYS ASN HIS LEU GLU GLY SEQRES 5 A 425 LYS ALA ALA ILE SER ASN LYS ILE THR SER CYS ILE PHE SEQRES 6 A 425 GLN LEU LEU GLN GLU ALA GLY ILE LYS THR ALA PHE THR SEQRES 7 A 425 ARG LYS CYS GLY GLU THR ALA PHE ILE ALA PRO GLN CYS SEQRES 8 A 425 GLU MET ILE PRO ILE GLU TRP VAL CYS ARG ARG ILE ALA SEQRES 9 A 425 THR GLY SER PHE LEU LYS ARG ASN PRO GLY VAL LYS GLU SEQRES 10 A 425 GLY TYR LYS PHE TYR PRO PRO LYS VAL GLU LEU PHE PHE SEQRES 11 A 425 LYS ASP ASP ALA ASN ASN ASP PRO GLN TRP SER GLU GLU SEQRES 12 A 425 GLN LEU ILE ALA ALA LYS PHE CYS PHE ALA GLY LEU LEU SEQRES 13 A 425 ILE GLY GLN THR GLU VAL ASP ILE MET SER HIS ALA THR SEQRES 14 A 425 GLN ALA ILE PHE GLU ILE LEU GLU LYS SER TRP LEU PRO SEQRES 15 A 425 GLN ASN CYS THR LEU VAL ASP MET LYS ILE GLU PHE GLY SEQRES 16 A 425 VAL ASP VAL THR THR LYS GLU ILE VAL LEU ALA ASP VAL SEQRES 17 A 425 ILE ASP ASN ASP SER TRP ARG LEU TRP PRO SER GLY ASP SEQRES 18 A 425 ARG SER GLN GLN LYS ASP LYS GLN SER TYR ARG ASP LEU SEQRES 19 A 425 LYS GLU VAL THR PRO GLU GLY LEU GLN MET VAL LYS LYS SEQRES 20 A 425 ASN PHE GLU TRP VAL ALA GLU ARG VAL GLU LEU LEU LEU SEQRES 21 A 425 LYS SER GLU SER GLN CYS ARG VAL VAL VAL LEU MET GLY SEQRES 22 A 425 SER THR SER ASP LEU GLY HIS CYS GLU LYS ILE LYS LYS SEQRES 23 A 425 ALA CYS GLY ASN PHE GLY ILE PRO CYS GLU LEU ARG VAL SEQRES 24 A 425 THR SER ALA HIS LYS GLY PRO ASP GLU THR LEU ARG ILE SEQRES 25 A 425 LYS ALA GLU TYR GLU GLY ASP GLY ILE PRO THR VAL PHE SEQRES 26 A 425 VAL ALA VAL ALA GLY ARG SER ASN GLY LEU GLY PRO VAL SEQRES 27 A 425 MET SER GLY ASN THR ALA TYR PRO VAL ILE SER CYS PRO SEQRES 28 A 425 PRO LEU THR PRO ASP TRP GLY VAL GLN ASP VAL TRP SER SEQRES 29 A 425 SER LEU ARG LEU PRO SER GLY LEU GLY CYS SER THR VAL SEQRES 30 A 425 LEU SER PRO GLU GLY SER ALA GLN PHE ALA ALA GLN ILE SEQRES 31 A 425 PHE GLY LEU SER ASN HIS LEU VAL TRP SER LYS LEU ARG SEQRES 32 A 425 ALA SER ILE LEU ASN THR TRP ILE SER LEU LYS GLN ALA SEQRES 33 A 425 ASP LYS LYS ILE ARG GLU CYS ASN LEU SEQRES 1 B 425 MET ALA THR ALA GLU VAL LEU ASN ILE GLY LYS LYS LEU SEQRES 2 B 425 TYR GLU GLY LYS THR LYS GLU VAL TYR GLU LEU LEU ASP SEQRES 3 B 425 SER PRO GLY LYS VAL LEU LEU GLN SER LYS ASP GLN ILE SEQRES 4 B 425 THR ALA GLY ASN ALA ALA ARG LYS ASN HIS LEU GLU GLY SEQRES 5 B 425 LYS ALA ALA ILE SER ASN LYS ILE THR SER CYS ILE PHE SEQRES 6 B 425 GLN LEU LEU GLN GLU ALA GLY ILE LYS THR ALA PHE THR SEQRES 7 B 425 ARG LYS CYS GLY GLU THR ALA PHE ILE ALA PRO GLN CYS SEQRES 8 B 425 GLU MET ILE PRO ILE GLU TRP VAL CYS ARG ARG ILE ALA SEQRES 9 B 425 THR GLY SER PHE LEU LYS ARG ASN PRO GLY VAL LYS GLU SEQRES 10 B 425 GLY TYR LYS PHE TYR PRO PRO LYS VAL GLU LEU PHE PHE SEQRES 11 B 425 LYS ASP ASP ALA ASN ASN ASP PRO GLN TRP SER GLU GLU SEQRES 12 B 425 GLN LEU ILE ALA ALA LYS PHE CYS PHE ALA GLY LEU LEU SEQRES 13 B 425 ILE GLY GLN THR GLU VAL ASP ILE MET SER HIS ALA THR SEQRES 14 B 425 GLN ALA ILE PHE GLU ILE LEU GLU LYS SER TRP LEU PRO SEQRES 15 B 425 GLN ASN CYS THR LEU VAL ASP MET LYS ILE GLU PHE GLY SEQRES 16 B 425 VAL ASP VAL THR THR LYS GLU ILE VAL LEU ALA ASP VAL SEQRES 17 B 425 ILE ASP ASN ASP SER TRP ARG LEU TRP PRO SER GLY ASP SEQRES 18 B 425 ARG SER GLN GLN LYS ASP LYS GLN SER TYR ARG ASP LEU SEQRES 19 B 425 LYS GLU VAL THR PRO GLU GLY LEU GLN MET VAL LYS LYS SEQRES 20 B 425 ASN PHE GLU TRP VAL ALA GLU ARG VAL GLU LEU LEU LEU SEQRES 21 B 425 LYS SER GLU SER GLN CYS ARG VAL VAL VAL LEU MET GLY SEQRES 22 B 425 SER THR SER ASP LEU GLY HIS CYS GLU LYS ILE LYS LYS SEQRES 23 B 425 ALA CYS GLY ASN PHE GLY ILE PRO CYS GLU LEU ARG VAL SEQRES 24 B 425 THR SER ALA HIS LYS GLY PRO ASP GLU THR LEU ARG ILE SEQRES 25 B 425 LYS ALA GLU TYR GLU GLY ASP GLY ILE PRO THR VAL PHE SEQRES 26 B 425 VAL ALA VAL ALA GLY ARG SER ASN GLY LEU GLY PRO VAL SEQRES 27 B 425 MET SER GLY ASN THR ALA TYR PRO VAL ILE SER CYS PRO SEQRES 28 B 425 PRO LEU THR PRO ASP TRP GLY VAL GLN ASP VAL TRP SER SEQRES 29 B 425 SER LEU ARG LEU PRO SER GLY LEU GLY CYS SER THR VAL SEQRES 30 B 425 LEU SER PRO GLU GLY SER ALA GLN PHE ALA ALA GLN ILE SEQRES 31 B 425 PHE GLY LEU SER ASN HIS LEU VAL TRP SER LYS LEU ARG SEQRES 32 B 425 ALA SER ILE LEU ASN THR TRP ILE SER LEU LYS GLN ALA SEQRES 33 B 425 ASP LYS LYS ILE ARG GLU CYS ASN LEU HET C2R A 501 22 HET OK8 A 502 30 HET IMD A 503 5 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO B 801 4 HET C2R B 802 22 HET C2R B 803 22 HET IMD B 804 5 HET EDO B 805 4 HET EDO B 806 4 HET EDO B 807 4 HET EDO B 808 4 HET EDO B 809 4 HETNAM C2R 5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H- HETNAM 2 C2R IMIDAZOLE-4-CARBOXYLIC ACID HETNAM OK8 (2~{S})-2-[[5-AZANYL-1-[(2~{R},3~{R},4~{S},5~{R})-3,4- HETNAM 2 OK8 BIS(OXIDANYL)-5-(PHOSPHONOOXYMETHYL)OXOLAN-2- HETNAM 3 OK8 YL]IMIDAZOL-4-YL]CAR BONYLAMINO]BUTANEDIOIC ACID HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN C2R CAIR; 4-CARBOXY-5-AMINOIMIDAZOLE RIBONUCLEOTIDE HETSYN OK8 SAICAR HETSYN EDO ETHYLENE GLYCOL FORMUL 3 C2R 3(C9 H14 N3 O9 P) FORMUL 4 OK8 C13 H19 N4 O12 P FORMUL 5 IMD 2(C3 H5 N2 1+) FORMUL 6 EDO 10(C2 H6 O2) FORMUL 19 HOH *452(H2 O) HELIX 1 AA1 GLY A 52 GLY A 72 1 21 HELIX 2 AA2 GLY A 106 ASN A 112 1 7 HELIX 3 AA3 SER A 141 ALA A 148 1 8 HELIX 4 AA4 GLY A 158 LEU A 181 1 24 HELIX 5 AA5 GLY A 220 GLN A 225 5 6 HELIX 6 AA6 LYS A 228 ASP A 233 1 6 HELIX 7 AA7 THR A 238 VAL A 256 1 19 HELIX 8 AA8 GLU A 257 LYS A 261 5 5 HELIX 9 AA9 SER A 274 SER A 276 5 3 HELIX 10 AB1 ASP A 277 ASN A 290 1 14 HELIX 11 AB2 GLY A 305 GLY A 318 1 14 HELIX 12 AB3 GLY A 334 THR A 343 1 10 HELIX 13 AB4 TRP A 357 VAL A 362 1 6 HELIX 14 AB5 VAL A 362 ARG A 367 1 6 HELIX 15 AB6 SER A 379 LEU A 393 1 15 HELIX 16 AB7 ASN A 395 ARG A 421 1 27 HELIX 17 AB8 GLU A 422 LEU A 425 5 4 HELIX 18 AB9 GLY B 52 GLY B 72 1 21 HELIX 19 AC1 GLY B 106 ASN B 112 1 7 HELIX 20 AC2 SER B 141 ALA B 148 1 8 HELIX 21 AC3 GLY B 158 LEU B 181 1 24 HELIX 22 AC4 GLY B 220 GLN B 225 5 6 HELIX 23 AC5 LYS B 228 ASP B 233 1 6 HELIX 24 AC6 GLU B 240 GLU B 257 1 18 HELIX 25 AC7 LEU B 258 LYS B 261 5 4 HELIX 26 AC8 SER B 274 SER B 276 5 3 HELIX 27 AC9 ASP B 277 ASN B 290 1 14 HELIX 28 AD1 GLY B 305 GLY B 318 1 14 HELIX 29 AD2 GLY B 334 THR B 343 1 10 HELIX 30 AD3 TRP B 357 VAL B 362 1 6 HELIX 31 AD4 VAL B 362 ARG B 367 1 6 HELIX 32 AD5 SER B 379 LEU B 393 1 15 HELIX 33 AD6 ASN B 395 GLU B 422 1 28 HELIX 34 AD7 CYS B 423 LEU B 425 5 3 SHEET 1 AA1 5 ILE A 9 GLU A 15 0 SHEET 2 AA1 5 LYS A 19 LEU A 24 -1 O VAL A 21 N LEU A 13 SHEET 3 AA1 5 LYS A 30 SER A 35 -1 O GLN A 34 N GLU A 20 SHEET 4 AA1 5 ALA A 85 PRO A 89 -1 O ALA A 88 N VAL A 31 SHEET 5 AA1 5 ARG A 79 LYS A 80 -1 N ARG A 79 O ILE A 87 SHEET 1 AA2 2 GLN A 38 ALA A 41 0 SHEET 2 AA2 2 ARG A 46 HIS A 49 -1 O ASN A 48 N ILE A 39 SHEET 1 AA3 3 CYS A 91 MET A 93 0 SHEET 2 AA3 3 CYS A 185 ASP A 197 -1 O VAL A 196 N GLU A 92 SHEET 3 AA3 3 ILE A 203 ALA A 206 -1 O VAL A 204 N GLY A 195 SHEET 1 AA4 5 GLN A 139 TRP A 140 0 SHEET 2 AA4 5 LYS A 120 PHE A 130 -1 N LEU A 128 O TRP A 140 SHEET 3 AA4 5 ILE A 96 ILE A 103 -1 N GLU A 97 O PHE A 129 SHEET 4 AA4 5 CYS A 185 ASP A 197 -1 O VAL A 188 N ARG A 102 SHEET 5 AA4 5 TRP A 214 PRO A 218 -1 O TRP A 217 N THR A 186 SHEET 1 AA5 2 CYS A 151 PHE A 152 0 SHEET 2 AA5 2 LEU A 155 LEU A 156 -1 O LEU A 155 N PHE A 152 SHEET 1 AA6 5 CYS A 295 VAL A 299 0 SHEET 2 AA6 5 ARG A 267 MET A 272 1 N VAL A 270 O GLU A 296 SHEET 3 AA6 5 THR A 323 VAL A 328 1 O VAL A 326 N VAL A 269 SHEET 4 AA6 5 VAL A 347 SER A 349 1 O ILE A 348 N ALA A 327 SHEET 5 AA6 5 SER A 375 THR A 376 1 O SER A 375 N SER A 349 SHEET 1 AA7 5 ILE B 9 GLU B 15 0 SHEET 2 AA7 5 LYS B 19 LEU B 24 -1 O VAL B 21 N LEU B 13 SHEET 3 AA7 5 LYS B 30 SER B 35 -1 O GLN B 34 N GLU B 20 SHEET 4 AA7 5 ALA B 85 PRO B 89 -1 O ALA B 88 N VAL B 31 SHEET 5 AA7 5 ARG B 79 LYS B 80 -1 N ARG B 79 O ILE B 87 SHEET 1 AA8 2 GLN B 38 ALA B 41 0 SHEET 2 AA8 2 ARG B 46 HIS B 49 -1 O ASN B 48 N ILE B 39 SHEET 1 AA9 3 CYS B 91 MET B 93 0 SHEET 2 AA9 3 PHE B 194 ASP B 197 -1 O VAL B 196 N GLU B 92 SHEET 3 AA9 3 ILE B 203 LEU B 205 -1 O VAL B 204 N GLY B 195 SHEET 1 AB1 5 GLN B 139 TRP B 140 0 SHEET 2 AB1 5 LYS B 120 PHE B 130 -1 N LEU B 128 O TRP B 140 SHEET 3 AB1 5 ILE B 96 ILE B 103 -1 N GLU B 97 O PHE B 129 SHEET 4 AB1 5 CYS B 185 ILE B 192 -1 O VAL B 188 N ARG B 102 SHEET 5 AB1 5 TRP B 214 PRO B 218 -1 O TRP B 217 N THR B 186 SHEET 1 AB2 2 CYS B 151 PHE B 152 0 SHEET 2 AB2 2 LEU B 155 LEU B 156 -1 O LEU B 155 N PHE B 152 SHEET 1 AB3 5 CYS B 295 VAL B 299 0 SHEET 2 AB3 5 VAL B 268 MET B 272 1 N VAL B 270 O GLU B 296 SHEET 3 AB3 5 VAL B 324 VAL B 328 1 O VAL B 326 N VAL B 269 SHEET 4 AB3 5 VAL B 347 SER B 349 1 O ILE B 348 N ALA B 327 SHEET 5 AB3 5 SER B 375 THR B 376 1 O SER B 375 N SER B 349 CISPEP 1 TYR A 122 PRO A 123 0 -2.30 CISPEP 2 TYR B 122 PRO B 123 0 2.76 SITE 1 AC1 14 SER A 274 ASP A 277 SER A 301 ALA A 302 SITE 2 AC1 14 HIS A 303 LYS A 304 ALA A 329 GLY A 330 SITE 3 AC1 14 SER A 332 GLY A 334 LEU A 335 PRO A 369 SITE 4 AC1 14 SER A 370 HOH A 649 SITE 1 AC2 21 LYS A 17 ALA A 41 GLY A 42 ASN A 43 SITE 2 AC2 21 ARG A 101 GLY A 106 SER A 107 ASP A 137 SITE 3 AC2 21 ASP A 189 MET A 190 LYS A 191 ASP A 212 SITE 4 AC2 21 TRP A 214 ARG A 215 LYS A 228 ARG A 232 SITE 5 AC2 21 IMD A 503 HOH A 681 HOH A 685 HOH A 689 SITE 6 AC2 21 HOH A 696 SITE 1 AC3 4 GLU A 97 PHE A 129 OK8 A 502 HOH A 784 SITE 1 AC4 4 LYS A 74 ILE A 203 ILE A 411 HOH A 675 SITE 1 AC5 4 GLU A 315 ASP A 319 HOH A 752 TYR B 122 SITE 1 AC6 5 PRO A 89 GLN A 90 CYS A 91 ASP A 207 SITE 2 AC6 5 HOH A 653 SITE 1 AC7 6 GLU A 317 GLY A 318 GLY A 320 GLU B 177 SITE 2 AC7 6 LYS B 178 HOH B 963 SITE 1 AC8 7 GLU A 177 LYS A 178 LEU A 181 GLU B 317 SITE 2 AC8 7 GLY B 318 GLY B 320 HOH B 904 SITE 1 AC9 13 GLY B 273 SER B 274 ASP B 277 SER B 301 SITE 2 AC9 13 ALA B 302 HIS B 303 LYS B 304 ALA B 329 SITE 3 AC9 13 GLY B 330 SER B 332 GLY B 334 LEU B 335 SITE 4 AC9 13 SER B 370 SITE 1 AD1 13 GLU B 97 ARG B 101 GLY B 106 SER B 107 SITE 2 AD1 13 ASP B 189 MET B 190 LYS B 191 ASP B 212 SITE 3 AD1 13 TRP B 214 ARG B 215 ARG B 232 IMD B 804 SITE 4 AD1 13 HOH B 932 SITE 1 AD2 5 GLU B 97 PHE B 129 C2R B 803 HOH B 947 SITE 2 AD2 5 HOH B1101 SITE 1 AD3 5 ILE B 73 LYS B 74 ILE B 203 ILE B 411 SITE 2 AD3 5 HOH B 903 SITE 1 AD4 4 TYR A 122 GLU B 315 ASP B 319 HOH B 920 SITE 1 AD5 6 PRO B 89 GLN B 90 CYS B 91 ASP B 207 SITE 2 AD5 6 HOH B 976 HOH B 999 SITE 1 AD6 4 SER B 262 GLY B 292 HOH B 983 HOH B 989 SITE 1 AD7 2 TYR B 119 LYS B 120 CRYST1 60.878 153.922 223.565 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004473 0.00000