HEADER METAL BINDING PROTEIN 20-MAR-20 6YDH TITLE SOLUTION STRUCTURE AND DYNAMICS OF ZN-FINGER HVO_2753 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF1610 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOFERAX VOLCANII; SOURCE 3 ORGANISM_TAXID: 2246; SOURCE 4 GENE: FQA18_04900; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: T7-EXPRESS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-CS KEYWDS ZN-FINGER, HVO, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KUBATOVA,D.PYPER,H.SCHWALBE REVDAT 2 14-JUN-23 6YDH 1 REMARK REVDAT 1 23-SEP-20 6YDH 0 JRNL AUTH N.KUBATOVA,D.PYPER,H.SCHWALBE JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF ZN-FINGER HVO_2753 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107433. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 411 REMARK 210 PRESSURE : AMBIENT MBAR REMARK 210 SAMPLE CONTENTS : 1 MM 15N 13C HVO_2753, 25 MM BIS REMARK 210 TRIS, 200 MM SODIUM CHLORIDE, 3 REMARK 210 MM DTT, 95% H2O/5% D2O; 1 MM 15N REMARK 210 13C HVO_2753, 25 MM BIS TRIS, REMARK 210 200 MM SODIUM CHLORIDE, 3 MM DTT, REMARK 210 100% D2O; 0.5 MM 15N HVO_2753, REMARK 210 25 MM BIS TRIS, 200 MM SODIUM REMARK 210 CHLORIDE, 3 MM DDT, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HNCACB; 3D HN(COCA)CB; 3D HN(CA) REMARK 210 CO; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HNHA; 3D (H)CC(CO)NH; 3D 1H-13C REMARK 210 TOCSY; 3D 1H-15N TOCSY; 3D CC(CO) REMARK 210 NH; 2D 1H-15N HETNOE; 2D 1H-15N REMARK 210 T1; 2D 1H-15N T2; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 950 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5, SPARKY 3.114, TALOS REMARK 210 N, TENSOR 2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 11 47.85 -102.28 REMARK 500 1 CYS A 18 -75.95 -109.59 REMARK 500 1 SER A 26 49.30 -89.65 REMARK 500 1 ALA A 28 105.52 -58.99 REMARK 500 2 HIS A 11 72.42 -118.55 REMARK 500 2 CYS A 18 -76.13 -108.48 REMARK 500 2 ALA A 28 100.28 -55.97 REMARK 500 3 HIS A 11 69.38 -112.21 REMARK 500 3 CYS A 18 -76.02 -109.40 REMARK 500 3 SER A 26 46.70 -91.17 REMARK 500 3 ALA A 28 102.92 -55.38 REMARK 500 4 ARG A 10 -75.16 -124.20 REMARK 500 4 HIS A 11 50.38 -117.62 REMARK 500 4 ALA A 12 96.89 -64.78 REMARK 500 4 CYS A 18 -75.94 -108.39 REMARK 500 4 ILE A 22 35.66 -98.91 REMARK 500 4 ALA A 28 97.37 -59.99 REMARK 500 5 CYS A 18 -75.20 -108.14 REMARK 500 5 ILE A 22 32.54 -97.64 REMARK 500 5 ALA A 28 97.11 -59.29 REMARK 500 6 GLN A 9 139.44 -175.61 REMARK 500 6 CYS A 18 -76.00 -109.47 REMARK 500 6 ILE A 22 35.74 -98.41 REMARK 500 6 ALA A 28 104.68 -54.18 REMARK 500 7 ALA A 2 172.56 -57.12 REMARK 500 7 ALA A 12 107.89 -175.36 REMARK 500 7 CYS A 18 -76.17 -109.03 REMARK 500 7 ILE A 22 35.73 -96.86 REMARK 500 7 ALA A 28 103.04 -56.85 REMARK 500 8 HIS A 11 42.37 -97.37 REMARK 500 8 CYS A 18 -76.23 -108.81 REMARK 500 8 ILE A 22 36.35 -96.41 REMARK 500 8 ALA A 28 103.35 -54.18 REMARK 500 9 CYS A 18 -75.93 -110.38 REMARK 500 9 SER A 26 48.79 -89.94 REMARK 500 10 ARG A 10 -74.84 -129.04 REMARK 500 10 ALA A 12 45.15 -90.11 REMARK 500 10 CYS A 18 -76.38 -127.33 REMARK 500 10 ILE A 22 36.16 -99.00 REMARK 500 10 SER A 26 45.12 -92.23 REMARK 500 10 ALA A 28 100.29 -57.93 REMARK 500 11 CYS A 18 -75.92 -109.31 REMARK 500 11 ILE A 22 35.67 -97.63 REMARK 500 11 ALA A 28 101.65 -54.10 REMARK 500 12 ALA A 12 106.23 -178.39 REMARK 500 12 CYS A 18 -75.86 -109.12 REMARK 500 12 SER A 26 44.57 -92.25 REMARK 500 13 SER A 5 -60.31 -104.18 REMARK 500 13 GLN A 9 -178.81 -61.64 REMARK 500 13 ALA A 12 121.16 -176.45 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34500 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE AND DYNAMICS OF ZN-FINGER HVO_2753 PROTEIN DBREF1 6YDH A 5 62 UNP A0A558GD87_HALVO DBREF2 6YDH A A0A558GD87 2 59 SEQADV 6YDH GLY A 1 UNP A0A558GD8 EXPRESSION TAG SEQADV 6YDH ALA A 2 UNP A0A558GD8 EXPRESSION TAG SEQADV 6YDH MET A 3 UNP A0A558GD8 EXPRESSION TAG SEQADV 6YDH GLY A 4 UNP A0A558GD8 EXPRESSION TAG SEQRES 1 A 62 GLY ALA MET GLY SER GLU SER GLU GLN ARG HIS ALA HIS SEQRES 2 A 62 GLN CYS VAL SER CYS GLY ILE ASN ILE ALA GLY MET SER SEQRES 3 A 62 ALA ALA THR PHE LYS CYS PRO ASP CYS GLY GLN GLU ILE SEQRES 4 A 62 SER ARG CYS SER LYS CYS ARG LYS GLN SER ASN LEU TYR SEQRES 5 A 62 GLU CYS PRO ASP CYS GLY PHE MET GLY PRO HELIX 1 AA1 LYS A 44 SER A 49 1 6 SHEET 1 AA1 2 ALA A 28 LYS A 31 0 SHEET 2 AA1 2 GLU A 38 ARG A 41 -1 O ARG A 41 N ALA A 28 SHEET 1 AA2 2 TYR A 52 CYS A 54 0 SHEET 2 AA2 2 PHE A 59 GLY A 61 -1 O PHE A 59 N CYS A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1