data_6YDR # _entry.id 6YDR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6YDR pdb_00006ydr 10.2210/pdb6ydr/pdb WWPDB D_1292107443 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-04-01 2 'Structure model' 1 1 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YDR _pdbx_database_status.recvd_initial_deposition_date 2020-03-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tomas Gilabert, O.' 1 ? 'Ferrero, D.S.' 2 ? 'Verdaguer, N.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of Mengla Virus VP30 C-terminal domain' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomas Gilabert, O.' 1 ? primary 'Ferrero, D.S.' 2 ? primary 'Verdaguer, N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Minor nucleoprotein VP30' 16747.809 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 152 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DTSNAQNRDILTLENLGDILKYLNSADLTTLDEVSMRAALSLTCAGIRKTSRSMINTLTEQHVSAENLSPDQTQIIKQTY TGIHLDKGGNFEAALWKNWDRRSISLFLQAAISVLNTTPCESSKSVISAYNHFLQKPGDIKRTTLGSINSSV ; _entity_poly.pdbx_seq_one_letter_code_can ;DTSNAQNRDILTLENLGDILKYLNSADLTTLDEVSMRAALSLTCAGIRKTSRSMINTLTEQHVSAENLSPDQTQIIKQTY TGIHLDKGGNFEAALWKNWDRRSISLFLQAAISVLNTTPCESSKSVISAYNHFLQKPGDIKRTTLGSINSSV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 THR n 1 3 SER n 1 4 ASN n 1 5 ALA n 1 6 GLN n 1 7 ASN n 1 8 ARG n 1 9 ASP n 1 10 ILE n 1 11 LEU n 1 12 THR n 1 13 LEU n 1 14 GLU n 1 15 ASN n 1 16 LEU n 1 17 GLY n 1 18 ASP n 1 19 ILE n 1 20 LEU n 1 21 LYS n 1 22 TYR n 1 23 LEU n 1 24 ASN n 1 25 SER n 1 26 ALA n 1 27 ASP n 1 28 LEU n 1 29 THR n 1 30 THR n 1 31 LEU n 1 32 ASP n 1 33 GLU n 1 34 VAL n 1 35 SER n 1 36 MET n 1 37 ARG n 1 38 ALA n 1 39 ALA n 1 40 LEU n 1 41 SER n 1 42 LEU n 1 43 THR n 1 44 CYS n 1 45 ALA n 1 46 GLY n 1 47 ILE n 1 48 ARG n 1 49 LYS n 1 50 THR n 1 51 SER n 1 52 ARG n 1 53 SER n 1 54 MET n 1 55 ILE n 1 56 ASN n 1 57 THR n 1 58 LEU n 1 59 THR n 1 60 GLU n 1 61 GLN n 1 62 HIS n 1 63 VAL n 1 64 SER n 1 65 ALA n 1 66 GLU n 1 67 ASN n 1 68 LEU n 1 69 SER n 1 70 PRO n 1 71 ASP n 1 72 GLN n 1 73 THR n 1 74 GLN n 1 75 ILE n 1 76 ILE n 1 77 LYS n 1 78 GLN n 1 79 THR n 1 80 TYR n 1 81 THR n 1 82 GLY n 1 83 ILE n 1 84 HIS n 1 85 LEU n 1 86 ASP n 1 87 LYS n 1 88 GLY n 1 89 GLY n 1 90 ASN n 1 91 PHE n 1 92 GLU n 1 93 ALA n 1 94 ALA n 1 95 LEU n 1 96 TRP n 1 97 LYS n 1 98 ASN n 1 99 TRP n 1 100 ASP n 1 101 ARG n 1 102 ARG n 1 103 SER n 1 104 ILE n 1 105 SER n 1 106 LEU n 1 107 PHE n 1 108 LEU n 1 109 GLN n 1 110 ALA n 1 111 ALA n 1 112 ILE n 1 113 SER n 1 114 VAL n 1 115 LEU n 1 116 ASN n 1 117 THR n 1 118 THR n 1 119 PRO n 1 120 CYS n 1 121 GLU n 1 122 SER n 1 123 SER n 1 124 LYS n 1 125 SER n 1 126 VAL n 1 127 ILE n 1 128 SER n 1 129 ALA n 1 130 TYR n 1 131 ASN n 1 132 HIS n 1 133 PHE n 1 134 LEU n 1 135 GLN n 1 136 LYS n 1 137 PRO n 1 138 GLY n 1 139 ASP n 1 140 ILE n 1 141 LYS n 1 142 ARG n 1 143 THR n 1 144 THR n 1 145 LEU n 1 146 GLY n 1 147 SER n 1 148 ILE n 1 149 ASN n 1 150 SER n 1 151 SER n 1 152 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 152 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VP30 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mengla dianlovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2496529 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 142 ? ? ? A . n A 1 2 THR 2 143 ? ? ? A . n A 1 3 SER 3 144 ? ? ? A . n A 1 4 ASN 4 145 ? ? ? A . n A 1 5 ALA 5 146 ? ? ? A . n A 1 6 GLN 6 147 ? ? ? A . n A 1 7 ASN 7 148 148 ASN ASN A . n A 1 8 ARG 8 149 149 ARG ARG A . n A 1 9 ASP 9 150 150 ASP ASP A . n A 1 10 ILE 10 151 151 ILE ILE A . n A 1 11 LEU 11 152 152 LEU LEU A . n A 1 12 THR 12 153 153 THR THR A . n A 1 13 LEU 13 154 154 LEU LEU A . n A 1 14 GLU 14 155 155 GLU GLU A . n A 1 15 ASN 15 156 156 ASN ASN A . n A 1 16 LEU 16 157 157 LEU LEU A . n A 1 17 GLY 17 158 158 GLY GLY A . n A 1 18 ASP 18 159 159 ASP ASP A . n A 1 19 ILE 19 160 160 ILE ILE A . n A 1 20 LEU 20 161 161 LEU LEU A . n A 1 21 LYS 21 162 162 LYS LYS A . n A 1 22 TYR 22 163 163 TYR TYR A . n A 1 23 LEU 23 164 164 LEU LEU A . n A 1 24 ASN 24 165 165 ASN ASN A . n A 1 25 SER 25 166 166 SER SER A . n A 1 26 ALA 26 167 167 ALA ALA A . n A 1 27 ASP 27 168 168 ASP ASP A . n A 1 28 LEU 28 169 169 LEU LEU A . n A 1 29 THR 29 170 170 THR THR A . n A 1 30 THR 30 171 171 THR THR A . n A 1 31 LEU 31 172 172 LEU LEU A . n A 1 32 ASP 32 173 173 ASP ASP A . n A 1 33 GLU 33 174 174 GLU GLU A . n A 1 34 VAL 34 175 175 VAL VAL A . n A 1 35 SER 35 176 176 SER SER A . n A 1 36 MET 36 177 177 MET MET A . n A 1 37 ARG 37 178 178 ARG ARG A . n A 1 38 ALA 38 179 179 ALA ALA A . n A 1 39 ALA 39 180 180 ALA ALA A . n A 1 40 LEU 40 181 181 LEU LEU A . n A 1 41 SER 41 182 182 SER SER A . n A 1 42 LEU 42 183 183 LEU LEU A . n A 1 43 THR 43 184 184 THR THR A . n A 1 44 CYS 44 185 185 CYS CYS A . n A 1 45 ALA 45 186 186 ALA ALA A . n A 1 46 GLY 46 187 187 GLY GLY A . n A 1 47 ILE 47 188 188 ILE ILE A . n A 1 48 ARG 48 189 189 ARG ARG A . n A 1 49 LYS 49 190 190 LYS LYS A . n A 1 50 THR 50 191 191 THR THR A . n A 1 51 SER 51 192 192 SER SER A . n A 1 52 ARG 52 193 193 ARG ARG A . n A 1 53 SER 53 194 194 SER SER A . n A 1 54 MET 54 195 195 MET MET A . n A 1 55 ILE 55 196 196 ILE ILE A . n A 1 56 ASN 56 197 197 ASN ASN A . n A 1 57 THR 57 198 198 THR THR A . n A 1 58 LEU 58 199 199 LEU LEU A . n A 1 59 THR 59 200 200 THR THR A . n A 1 60 GLU 60 201 201 GLU GLU A . n A 1 61 GLN 61 202 202 GLN GLN A . n A 1 62 HIS 62 203 203 HIS HIS A . n A 1 63 VAL 63 204 204 VAL VAL A . n A 1 64 SER 64 205 205 SER SER A . n A 1 65 ALA 65 206 206 ALA ALA A . n A 1 66 GLU 66 207 207 GLU GLU A . n A 1 67 ASN 67 208 208 ASN ASN A . n A 1 68 LEU 68 209 209 LEU LEU A . n A 1 69 SER 69 210 210 SER SER A . n A 1 70 PRO 70 211 211 PRO PRO A . n A 1 71 ASP 71 212 212 ASP ASP A . n A 1 72 GLN 72 213 213 GLN GLN A . n A 1 73 THR 73 214 214 THR THR A . n A 1 74 GLN 74 215 215 GLN GLN A . n A 1 75 ILE 75 216 216 ILE ILE A . n A 1 76 ILE 76 217 217 ILE ILE A . n A 1 77 LYS 77 218 218 LYS LYS A . n A 1 78 GLN 78 219 219 GLN GLN A . n A 1 79 THR 79 220 220 THR THR A . n A 1 80 TYR 80 221 221 TYR TYR A . n A 1 81 THR 81 222 222 THR THR A . n A 1 82 GLY 82 223 223 GLY GLY A . n A 1 83 ILE 83 224 224 ILE ILE A . n A 1 84 HIS 84 225 225 HIS HIS A . n A 1 85 LEU 85 226 226 LEU LEU A . n A 1 86 ASP 86 227 227 ASP ASP A . n A 1 87 LYS 87 228 228 LYS LYS A . n A 1 88 GLY 88 229 229 GLY GLY A . n A 1 89 GLY 89 230 230 GLY GLY A . n A 1 90 ASN 90 231 231 ASN ASN A . n A 1 91 PHE 91 232 232 PHE PHE A . n A 1 92 GLU 92 233 233 GLU GLU A . n A 1 93 ALA 93 234 234 ALA ALA A . n A 1 94 ALA 94 235 235 ALA ALA A . n A 1 95 LEU 95 236 236 LEU LEU A . n A 1 96 TRP 96 237 237 TRP TRP A . n A 1 97 LYS 97 238 238 LYS LYS A . n A 1 98 ASN 98 239 239 ASN ASN A . n A 1 99 TRP 99 240 240 TRP TRP A . n A 1 100 ASP 100 241 241 ASP ASP A . n A 1 101 ARG 101 242 242 ARG ARG A . n A 1 102 ARG 102 243 243 ARG ARG A . n A 1 103 SER 103 244 244 SER SER A . n A 1 104 ILE 104 245 245 ILE ILE A . n A 1 105 SER 105 246 246 SER SER A . n A 1 106 LEU 106 247 247 LEU LEU A . n A 1 107 PHE 107 248 248 PHE PHE A . n A 1 108 LEU 108 249 249 LEU LEU A . n A 1 109 GLN 109 250 250 GLN GLN A . n A 1 110 ALA 110 251 251 ALA ALA A . n A 1 111 ALA 111 252 252 ALA ALA A . n A 1 112 ILE 112 253 253 ILE ILE A . n A 1 113 SER 113 254 254 SER SER A . n A 1 114 VAL 114 255 255 VAL VAL A . n A 1 115 LEU 115 256 256 LEU LEU A . n A 1 116 ASN 116 257 257 ASN ASN A . n A 1 117 THR 117 258 258 THR THR A . n A 1 118 THR 118 259 259 THR THR A . n A 1 119 PRO 119 260 260 PRO PRO A . n A 1 120 CYS 120 261 261 CYS CYS A . n A 1 121 GLU 121 262 262 GLU GLU A . n A 1 122 SER 122 263 263 SER SER A . n A 1 123 SER 123 264 264 SER SER A . n A 1 124 LYS 124 265 265 LYS LYS A . n A 1 125 SER 125 266 266 SER SER A . n A 1 126 VAL 126 267 267 VAL VAL A . n A 1 127 ILE 127 268 268 ILE ILE A . n A 1 128 SER 128 269 269 SER SER A . n A 1 129 ALA 129 270 270 ALA ALA A . n A 1 130 TYR 130 271 271 TYR TYR A . n A 1 131 ASN 131 272 272 ASN ASN A . n A 1 132 HIS 132 273 273 HIS HIS A . n A 1 133 PHE 133 274 274 PHE PHE A . n A 1 134 LEU 134 275 275 LEU LEU A . n A 1 135 GLN 135 276 276 GLN GLN A . n A 1 136 LYS 136 277 ? ? ? A . n A 1 137 PRO 137 278 ? ? ? A . n A 1 138 GLY 138 279 ? ? ? A . n A 1 139 ASP 139 280 ? ? ? A . n A 1 140 ILE 140 281 ? ? ? A . n A 1 141 LYS 141 282 ? ? ? A . n A 1 142 ARG 142 283 ? ? ? A . n A 1 143 THR 143 284 ? ? ? A . n A 1 144 THR 144 285 ? ? ? A . n A 1 145 LEU 145 286 ? ? ? A . n A 1 146 GLY 146 287 ? ? ? A . n A 1 147 SER 147 288 ? ? ? A . n A 1 148 ILE 148 289 ? ? ? A . n A 1 149 ASN 149 290 ? ? ? A . n A 1 150 SER 150 291 ? ? ? A . n A 1 151 SER 151 292 ? ? ? A . n A 1 152 VAL 152 293 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 338 GOL GOL A . C 3 SO4 1 302 138 SO4 SO4 A . D 4 HOH 1 401 49 HOH HOH A . D 4 HOH 2 402 47 HOH HOH A . D 4 HOH 3 403 48 HOH HOH A . D 4 HOH 4 404 122 HOH HOH A . D 4 HOH 5 405 36 HOH HOH A . D 4 HOH 6 406 39 HOH HOH A . D 4 HOH 7 407 23 HOH HOH A . D 4 HOH 8 408 60 HOH HOH A . D 4 HOH 9 409 109 HOH HOH A . D 4 HOH 10 410 90 HOH HOH A . D 4 HOH 11 411 40 HOH HOH A . D 4 HOH 12 412 44 HOH HOH A . D 4 HOH 13 413 149 HOH HOH A . D 4 HOH 14 414 213 HOH HOH A . D 4 HOH 15 415 21 HOH HOH A . D 4 HOH 16 416 8 HOH HOH A . D 4 HOH 17 417 214 HOH HOH A . D 4 HOH 18 418 45 HOH HOH A . D 4 HOH 19 419 52 HOH HOH A . D 4 HOH 20 420 112 HOH HOH A . D 4 HOH 21 421 6 HOH HOH A . D 4 HOH 22 422 134 HOH HOH A . D 4 HOH 23 423 46 HOH HOH A . D 4 HOH 24 424 22 HOH HOH A . D 4 HOH 25 425 177 HOH HOH A . D 4 HOH 26 426 106 HOH HOH A . D 4 HOH 27 427 115 HOH HOH A . D 4 HOH 28 428 26 HOH HOH A . D 4 HOH 29 429 3 HOH HOH A . D 4 HOH 30 430 97 HOH HOH A . D 4 HOH 31 431 217 HOH HOH A . D 4 HOH 32 432 25 HOH HOH A . D 4 HOH 33 433 85 HOH HOH A . D 4 HOH 34 434 15 HOH HOH A . D 4 HOH 35 435 73 HOH HOH A . D 4 HOH 36 436 24 HOH HOH A . D 4 HOH 37 437 95 HOH HOH A . D 4 HOH 38 438 1 HOH HOH A . D 4 HOH 39 439 17 HOH HOH A . D 4 HOH 40 440 10 HOH HOH A . D 4 HOH 41 441 65 HOH HOH A . D 4 HOH 42 442 7 HOH HOH A . D 4 HOH 43 443 28 HOH HOH A . D 4 HOH 44 444 2 HOH HOH A . D 4 HOH 45 445 54 HOH HOH A . D 4 HOH 46 446 63 HOH HOH A . D 4 HOH 47 447 9 HOH HOH A . D 4 HOH 48 448 38 HOH HOH A . D 4 HOH 49 449 13 HOH HOH A . D 4 HOH 50 450 113 HOH HOH A . D 4 HOH 51 451 37 HOH HOH A . D 4 HOH 52 452 117 HOH HOH A . D 4 HOH 53 453 51 HOH HOH A . D 4 HOH 54 454 50 HOH HOH A . D 4 HOH 55 455 5 HOH HOH A . D 4 HOH 56 456 4 HOH HOH A . D 4 HOH 57 457 14 HOH HOH A . D 4 HOH 58 458 59 HOH HOH A . D 4 HOH 59 459 75 HOH HOH A . D 4 HOH 60 460 11 HOH HOH A . D 4 HOH 61 461 105 HOH HOH A . D 4 HOH 62 462 16 HOH HOH A . D 4 HOH 63 463 61 HOH HOH A . D 4 HOH 64 464 29 HOH HOH A . D 4 HOH 65 465 74 HOH HOH A . D 4 HOH 66 466 64 HOH HOH A . D 4 HOH 67 467 130 HOH HOH A . D 4 HOH 68 468 27 HOH HOH A . D 4 HOH 69 469 53 HOH HOH A . D 4 HOH 70 470 72 HOH HOH A . D 4 HOH 71 471 12 HOH HOH A . D 4 HOH 72 472 41 HOH HOH A . D 4 HOH 73 473 176 HOH HOH A . D 4 HOH 74 474 153 HOH HOH A . D 4 HOH 75 475 128 HOH HOH A . D 4 HOH 76 476 92 HOH HOH A . D 4 HOH 77 477 215 HOH HOH A . D 4 HOH 78 478 82 HOH HOH A . D 4 HOH 79 479 84 HOH HOH A . D 4 HOH 80 480 111 HOH HOH A . D 4 HOH 81 481 218 HOH HOH A . D 4 HOH 82 482 34 HOH HOH A . D 4 HOH 83 483 71 HOH HOH A . D 4 HOH 84 484 30 HOH HOH A . D 4 HOH 85 485 154 HOH HOH A . D 4 HOH 86 486 87 HOH HOH A . D 4 HOH 87 487 76 HOH HOH A . D 4 HOH 88 488 83 HOH HOH A . D 4 HOH 89 489 209 HOH HOH A . D 4 HOH 90 490 68 HOH HOH A . D 4 HOH 91 491 55 HOH HOH A . D 4 HOH 92 492 56 HOH HOH A . D 4 HOH 93 493 32 HOH HOH A . D 4 HOH 94 494 208 HOH HOH A . D 4 HOH 95 495 20 HOH HOH A . D 4 HOH 96 496 88 HOH HOH A . D 4 HOH 97 497 137 HOH HOH A . D 4 HOH 98 498 129 HOH HOH A . D 4 HOH 99 499 79 HOH HOH A . D 4 HOH 100 500 86 HOH HOH A . D 4 HOH 101 501 144 HOH HOH A . D 4 HOH 102 502 81 HOH HOH A . D 4 HOH 103 503 185 HOH HOH A . D 4 HOH 104 504 169 HOH HOH A . D 4 HOH 105 505 118 HOH HOH A . D 4 HOH 106 506 66 HOH HOH A . D 4 HOH 107 507 188 HOH HOH A . D 4 HOH 108 508 67 HOH HOH A . D 4 HOH 109 509 197 HOH HOH A . D 4 HOH 110 510 89 HOH HOH A . D 4 HOH 111 511 116 HOH HOH A . D 4 HOH 112 512 124 HOH HOH A . D 4 HOH 113 513 91 HOH HOH A . D 4 HOH 114 514 216 HOH HOH A . D 4 HOH 115 515 18 HOH HOH A . D 4 HOH 116 516 178 HOH HOH A . D 4 HOH 117 517 212 HOH HOH A . D 4 HOH 118 518 58 HOH HOH A . D 4 HOH 119 519 156 HOH HOH A . D 4 HOH 120 520 159 HOH HOH A . D 4 HOH 121 521 96 HOH HOH A . D 4 HOH 122 522 125 HOH HOH A . D 4 HOH 123 523 191 HOH HOH A . D 4 HOH 124 524 189 HOH HOH A . D 4 HOH 125 525 104 HOH HOH A . D 4 HOH 126 526 193 HOH HOH A . D 4 HOH 127 527 206 HOH HOH A . D 4 HOH 128 528 127 HOH HOH A . D 4 HOH 129 529 167 HOH HOH A . D 4 HOH 130 530 101 HOH HOH A . D 4 HOH 131 531 121 HOH HOH A . D 4 HOH 132 532 139 HOH HOH A . D 4 HOH 133 533 158 HOH HOH A . D 4 HOH 134 534 164 HOH HOH A . D 4 HOH 135 535 33 HOH HOH A . D 4 HOH 136 536 107 HOH HOH A . D 4 HOH 137 537 151 HOH HOH A . D 4 HOH 138 538 78 HOH HOH A . D 4 HOH 139 539 31 HOH HOH A . D 4 HOH 140 540 205 HOH HOH A . D 4 HOH 141 541 62 HOH HOH A . D 4 HOH 142 542 103 HOH HOH A . D 4 HOH 143 543 70 HOH HOH A . D 4 HOH 144 544 93 HOH HOH A . D 4 HOH 145 545 132 HOH HOH A . D 4 HOH 146 546 211 HOH HOH A . D 4 HOH 147 547 19 HOH HOH A . D 4 HOH 148 548 77 HOH HOH A . D 4 HOH 149 549 94 HOH HOH A . D 4 HOH 150 550 42 HOH HOH A . D 4 HOH 151 551 98 HOH HOH A . D 4 HOH 152 552 142 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6YDR _cell.details ? _cell.formula_units_Z ? _cell.length_a 73.062 _cell.length_a_esd ? _cell.length_b 73.062 _cell.length_b_esd ? _cell.length_c 53.459 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YDR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M Ammonium Sulfate , 0.1M Sodium, Acetate pH4.6, 25% PEG4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-12-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALBA BEAMLINE XALOC' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline XALOC _diffrn_source.pdbx_synchrotron_site ALBA # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6YDR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.34 _reflns.d_resolution_low 40.87 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36367 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.90 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.4 _reflns.pdbx_Rmerge_I_obs 0.06541 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.27 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.07254 _reflns.pdbx_Rpim_I_all 0.03027 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_CC_star 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.344 _reflns_shell.d_res_low 1.392 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.82 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3598 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.4376 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.4909 _reflns_shell.pdbx_Rpim_I_all 0.2158 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.852 _reflns_shell.pdbx_CC_star 0.959 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.50 _refine.aniso_B[1][2] -0.25 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.50 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 1.62 _refine.B_iso_max ? _refine.B_iso_mean 23.282 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.981 _refine.correlation_coeff_Fo_to_Fc_free 0.975 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6YDR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.34 _refine.ls_d_res_low 40.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34575 _refine.ls_number_reflns_R_free 1792 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.88 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.12848 _refine.ls_R_factor_R_free 0.15496 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.12705 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5T3W _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.040 _refine.pdbx_overall_ESU_R_Free 0.040 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.185 _refine.overall_SU_ML 0.022 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.34 _refine_hist.d_res_low 40.87 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1171 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.019 1104 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1018 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.325 1.888 1515 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.288 2.925 2381 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.765 5.000 150 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.228 25.208 48 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 10.737 15.000 200 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.829 15.000 6 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.094 0.200 182 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 1251 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 211 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 2.246 1.838 552 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.994 1.826 551 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.472 2.757 700 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.488 2.768 701 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 9.982 2.555 552 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 9.927 2.555 549 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 9.181 3.573 804 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.003 25.011 1357 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.532 24.199 1319 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 6.140 3.000 2120 ? r_rigid_bond_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.344 _refine_ls_shell.d_res_low 1.379 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 117 _refine_ls_shell.number_reflns_R_work 2542 _refine_ls_shell.percent_reflns_obs 98.92 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6YDR _struct.title 'Crystal structure of Mengla Virus VP30 C-terminal domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YDR _struct_keywords.text 'Transcription Factor, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A3S8UVN5_9MONO _struct_ref.pdbx_db_accession A0A3S8UVN5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DTSNAQNRDILTLENLGDILKYLNSADLTTLDEVSMRAALSLTCAGIRKTSRSMINTLTEQHVSAENLSPDQTQIIKQTY TGIHLDKGGNFEAALWKNWDRRSISLFLQAAISVLNTTPCESSKSVISAYNHFLQKPGDIKRTTLGSINSSV ; _struct_ref.pdbx_align_begin 142 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6YDR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A3S8UVN5 _struct_ref_seq.db_align_beg 142 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 293 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 142 _struct_ref_seq.pdbx_auth_seq_align_end 293 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4510 ? 1 MORE -48 ? 1 'SSA (A^2)' 12680 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support cross-linking _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 -y,-x,-z+1/3 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17.8196666667 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 12 ? SER A 25 ? THR A 153 SER A 166 1 ? 14 HELX_P HELX_P2 AA2 ALA A 26 ? LEU A 31 ? ALA A 167 LEU A 172 5 ? 6 HELX_P HELX_P3 AA3 ASP A 32 ? LYS A 49 ? ASP A 173 LYS A 190 1 ? 18 HELX_P HELX_P4 AA4 THR A 50 ? SER A 53 ? THR A 191 SER A 194 5 ? 4 HELX_P HELX_P5 AA5 MET A 54 ? GLU A 66 ? MET A 195 GLU A 207 1 ? 13 HELX_P HELX_P6 AA6 SER A 69 ? ASP A 71 ? SER A 210 ASP A 212 5 ? 3 HELX_P HELX_P7 AA7 GLN A 72 ? LEU A 85 ? GLN A 213 LEU A 226 1 ? 14 HELX_P HELX_P8 AA8 GLY A 89 ? TRP A 99 ? GLY A 230 TRP A 240 1 ? 11 HELX_P HELX_P9 AA9 ASP A 100 ? THR A 118 ? ASP A 241 THR A 259 1 ? 19 HELX_P HELX_P10 AB1 SER A 123 ? LEU A 134 ? SER A 264 LEU A 275 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 7 'binding site for residue GOL A 301' AC2 Software A SO4 302 ? 6 'binding site for residue SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 52 ? ARG A 193 . ? 6_555 ? 2 AC1 7 ARG A 52 ? ARG A 193 . ? 1_555 ? 3 AC1 7 SER A 53 ? SER A 194 . ? 1_555 ? 4 AC1 7 SO4 C . ? SO4 A 302 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 414 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 480 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 497 . ? 1_555 ? 8 AC2 6 ARG A 52 ? ARG A 193 . ? 6_555 ? 9 AC2 6 ASN A 56 ? ASN A 197 . ? 1_555 ? 10 AC2 6 LYS A 77 ? LYS A 218 . ? 1_555 ? 11 AC2 6 LYS A 87 ? LYS A 228 . ? 2_554 ? 12 AC2 6 GOL B . ? GOL A 301 . ? 1_555 ? 13 AC2 6 HOH D . ? HOH A 481 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 401 ? D HOH . 2 1 A HOH 443 ? D HOH . # _pdbx_entry_details.entry_id 6YDR _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 551 ? 6.06 . 2 1 O ? A HOH 552 ? 6.12 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 142 ? A ASP 1 2 1 Y 1 A THR 143 ? A THR 2 3 1 Y 1 A SER 144 ? A SER 3 4 1 Y 1 A ASN 145 ? A ASN 4 5 1 Y 1 A ALA 146 ? A ALA 5 6 1 Y 1 A GLN 147 ? A GLN 6 7 1 Y 1 A LYS 277 ? A LYS 136 8 1 Y 1 A PRO 278 ? A PRO 137 9 1 Y 1 A GLY 279 ? A GLY 138 10 1 Y 1 A ASP 280 ? A ASP 139 11 1 Y 1 A ILE 281 ? A ILE 140 12 1 Y 1 A LYS 282 ? A LYS 141 13 1 Y 1 A ARG 283 ? A ARG 142 14 1 Y 1 A THR 284 ? A THR 143 15 1 Y 1 A THR 285 ? A THR 144 16 1 Y 1 A LEU 286 ? A LEU 145 17 1 Y 1 A GLY 287 ? A GLY 146 18 1 Y 1 A SER 288 ? A SER 147 19 1 Y 1 A ILE 289 ? A ILE 148 20 1 Y 1 A ASN 290 ? A ASN 149 21 1 Y 1 A SER 291 ? A SER 150 22 1 Y 1 A SER 292 ? A SER 151 23 1 Y 1 A VAL 293 ? A VAL 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 SO4 S S N N 318 SO4 O1 O N N 319 SO4 O2 O N N 320 SO4 O3 O N N 321 SO4 O4 O N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 SO4 S O1 doub N N 303 SO4 S O2 doub N N 304 SO4 S O3 sing N N 305 SO4 S O4 sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _pdbx_audit_support.funding_organization 'Spanish Ministry of Economy and Competitiveness' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number BIO2017-83906-P _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5T3W _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6YDR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013687 _atom_sites.fract_transf_matrix[1][2] 0.007902 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015804 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018706 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_