HEADER HYDROLASE 21-MAR-20 6YDY TITLE CATIONIC TRYPSIN IN COMPLEX WITH A D-PHE-PRO-BENZYLAMINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE, PROTEASE, SERINE PROTEASE, DIGESTION, METAL ION BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.NGO,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6YDY 1 REMARK REVDAT 1 31-MAR-21 6YDY 0 JRNL AUTH A.SANDNER,K.NGO,J.SCHIEBEL,A.MARCA,L.SCHMIDT,T.STEINMETZER, JRNL AUTH 2 A.HEINE,G.KLEBE JRNL TITL CATIONIC TRYPSIN IN COMPLEX WITH A D-PHE-PRO-BENZYLAMINE JRNL TITL 2 DERIVATIVE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 32227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7300 - 3.3200 0.99 2864 151 0.1580 0.1569 REMARK 3 2 3.3200 - 2.6300 0.99 2682 141 0.1600 0.1936 REMARK 3 3 2.6300 - 2.3000 0.98 2664 141 0.1534 0.1847 REMARK 3 4 2.3000 - 2.0900 0.97 2585 136 0.1522 0.2219 REMARK 3 5 2.0900 - 1.9400 0.96 2583 136 0.1544 0.1770 REMARK 3 6 1.9400 - 1.8300 0.95 2534 133 0.1573 0.1868 REMARK 3 7 1.8300 - 1.7400 0.95 2533 133 0.1548 0.1850 REMARK 3 8 1.7400 - 1.6600 0.93 2469 130 0.1619 0.1823 REMARK 3 9 1.6600 - 1.6000 0.93 2477 131 0.1601 0.1832 REMARK 3 10 1.6000 - 1.5400 0.92 2433 128 0.1567 0.2002 REMARK 3 11 1.5400 - 1.4900 0.91 2421 127 0.1775 0.2145 REMARK 3 12 1.4900 - 1.4500 0.90 2370 125 0.1979 0.2452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1709 REMARK 3 ANGLE : 0.930 2331 REMARK 3 CHIRALITY : 0.083 262 REMARK 3 PLANARITY : 0.006 317 REMARK 3 DIHEDRAL : 12.271 612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2494 -0.8944 19.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1043 REMARK 3 T33: 0.1158 T12: 0.0221 REMARK 3 T13: 0.0104 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.2219 L22: 0.6613 REMARK 3 L33: 0.5949 L12: -0.0542 REMARK 3 L13: -0.1676 L23: 0.2956 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.0621 S13: -0.0018 REMARK 3 S21: 0.0845 S22: 0.0277 S23: 0.0225 REMARK 3 S31: 0.0179 S32: 0.0042 S33: -0.0024 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7738 -9.2855 15.0826 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.1010 REMARK 3 T33: 0.1111 T12: 0.0284 REMARK 3 T13: 0.0174 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.4380 L22: 0.4515 REMARK 3 L33: 0.1957 L12: 0.1752 REMARK 3 L13: 0.0506 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.0351 S13: 0.0054 REMARK 3 S21: 0.1018 S22: 0.0384 S23: 0.0204 REMARK 3 S31: 0.1422 S32: -0.0201 S33: -0.0026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4677 -0.6808 6.5789 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1374 REMARK 3 T33: 0.1344 T12: 0.0250 REMARK 3 T13: -0.0031 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2253 L22: 0.0584 REMARK 3 L33: 0.4142 L12: 0.1557 REMARK 3 L13: 0.0522 L23: 0.1339 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.0565 S13: 0.0146 REMARK 3 S21: -0.1008 S22: 0.0134 S23: 0.0781 REMARK 3 S31: -0.0898 S32: -0.0654 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4857 -4.5185 -0.6199 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1289 REMARK 3 T33: 0.1198 T12: -0.0050 REMARK 3 T13: -0.0039 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5053 L22: 0.2201 REMARK 3 L33: 0.5492 L12: -0.1868 REMARK 3 L13: 0.3548 L23: 0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.1090 S13: 0.0054 REMARK 3 S21: -0.0916 S22: -0.0126 S23: 0.0767 REMARK 3 S31: -0.1000 S32: 0.0492 S33: -0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1350 -18.0980 12.9913 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1337 REMARK 3 T33: 0.1353 T12: -0.0005 REMARK 3 T13: 0.0098 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0282 L22: 0.0119 REMARK 3 L33: 0.0234 L12: -0.0601 REMARK 3 L13: 0.0611 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.0351 S13: -0.0312 REMARK 3 S21: -0.0459 S22: -0.0478 S23: 0.0080 REMARK 3 S31: 0.1146 S32: 0.0122 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : INCOATEC IµS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.349 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 9.320 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 17.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.25 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 FOR SHELL : 5.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M (NH4)2SO4, 0.1 M IMIDAZOLE, 0.1% REMARK 280 SODIUM AZIDE, 25% (W/V) PEG8000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.17867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.35733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.35733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.17867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 THR A -5 REMARK 465 PHE A -4 REMARK 465 ILE A -3 REMARK 465 PHE A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 109 CE NZ REMARK 470 ARG A 117 CZ NH1 NH2 REMARK 470 LYS A 145 CD CE NZ REMARK 470 THR A 149 OG1 CG2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 222 CD CE NZ REMARK 470 LYS A 224 CE NZ REMARK 470 ILE A 242 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 -82.50 -116.49 REMARK 500 SER A 195 133.30 -36.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 613 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 614 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 ASN A 72 O 91.7 REMARK 620 3 VAL A 75 O 164.6 80.6 REMARK 620 4 GLU A 80 OE2 103.3 158.4 88.0 REMARK 620 5 HOH A 408 O 87.0 89.4 106.2 76.1 REMARK 620 6 HOH A 477 O 78.9 105.6 90.2 92.7 159.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K73 A 302 DBREF 6YDY A -7 245 UNP P00760 TRY1_BOVIN 1 246 SEQRES 1 A 246 MET LYS THR PHE ILE PHE LEU ALA LEU LEU GLY ALA ALA SEQRES 2 A 246 VAL ALA PHE PRO VAL ASP ASP ASP ASP LYS ILE VAL GLY SEQRES 3 A 246 GLY TYR THR CYS GLY ALA ASN THR VAL PRO TYR GLN VAL SEQRES 4 A 246 SER LEU ASN SER GLY TYR HIS PHE CYS GLY GLY SER LEU SEQRES 5 A 246 ILE ASN SER GLN TRP VAL VAL SER ALA ALA HIS CYS TYR SEQRES 6 A 246 LYS SER GLY ILE GLN VAL ARG LEU GLY GLU ASP ASN ILE SEQRES 7 A 246 ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SER ALA SER SEQRES 8 A 246 LYS SER ILE VAL HIS PRO SER TYR ASN SER ASN THR LEU SEQRES 9 A 246 ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SER ALA ALA SEQRES 10 A 246 SER LEU ASN SER ARG VAL ALA SER ILE SER LEU PRO THR SEQRES 11 A 246 SER CYS ALA SER ALA GLY THR GLN CYS LEU ILE SER GLY SEQRES 12 A 246 TRP GLY ASN THR LYS SER SER GLY THR SER TYR PRO ASP SEQRES 13 A 246 VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SER ASP SER SEQRES 14 A 246 SER CYS LYS SER ALA TYR PRO GLY GLN ILE THR SER ASN SEQRES 15 A 246 MET PHE CYS ALA GLY TYR LEU GLU GLY GLY LYS ASP SER SEQRES 16 A 246 CYS GLN GLY ASP SER GLY GLY PRO VAL VAL CYS SER GLY SEQRES 17 A 246 LYS LEU GLN GLY ILE VAL SER TRP GLY SER GLY CYS ALA SEQRES 18 A 246 GLN LYS ASN LYS PRO GLY VAL TYR THR LYS VAL CYS ASN SEQRES 19 A 246 TYR VAL SER TRP ILE LYS GLN THR ILE ALA SER ASN HET CA A 301 1 HET K73 A 302 28 HETNAM CA CALCIUM ION HETNAM K73 (2~{S})-~{N}-[[4-(AMINOMETHYL)PHENYL]METHYL]-1- HETNAM 2 K73 [(2~{R})-2-AZANYL-3-PHENYL-PROPANOYL]PYRROLIDINE-2- HETNAM 3 K73 CARBOXAMIDE FORMUL 2 CA CA 2+ FORMUL 3 K73 C22 H28 N4 O2 FORMUL 4 HOH *214(H2 O) HELIX 1 AA1 ALA A 55 TYR A 59 5 5 HELIX 2 AA2 SER A 164 TYR A 172 1 9 HELIX 3 AA3 TYR A 234 SER A 244 1 11 SHEET 1 AA1 7 TYR A 20 THR A 21 0 SHEET 2 AA1 7 LYS A 156 PRO A 161 -1 O CYS A 157 N TYR A 20 SHEET 3 AA1 7 GLN A 135 GLY A 140 -1 N ILE A 138 O LEU A 158 SHEET 4 AA1 7 PRO A 198 CYS A 201 -1 O VAL A 200 N LEU A 137 SHEET 5 AA1 7 LYS A 204 TRP A 215 -1 O LYS A 204 N CYS A 201 SHEET 6 AA1 7 GLY A 226 LYS A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 AA1 7 MET A 180 ALA A 183 -1 N PHE A 181 O TYR A 228 SHEET 1 AA2 7 GLN A 30 ASN A 34 0 SHEET 2 AA2 7 HIS A 40 ASN A 48 -1 O CYS A 42 N LEU A 33 SHEET 3 AA2 7 TRP A 51 SER A 54 -1 O VAL A 53 N SER A 45 SHEET 4 AA2 7 MET A 104 LEU A 108 -1 O ILE A 106 N VAL A 52 SHEET 5 AA2 7 GLN A 81 VAL A 90 -1 N SER A 86 O LYS A 107 SHEET 6 AA2 7 GLN A 64 LEU A 67 -1 N VAL A 65 O ILE A 83 SHEET 7 AA2 7 GLN A 30 ASN A 34 -1 N ASN A 34 O GLN A 64 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 128 CYS A 232 1555 1555 2.02 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.02 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.04 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.02 LINK OE1 GLU A 70 CA CA A 301 1555 1555 2.26 LINK O ASN A 72 CA CA A 301 1555 1555 2.33 LINK O VAL A 75 CA CA A 301 1555 1555 2.25 LINK OE2 GLU A 80 CA CA A 301 1555 1555 2.38 LINK CA CA A 301 O HOH A 408 1555 1555 2.43 LINK CA CA A 301 O HOH A 477 1555 1555 2.46 SITE 1 AC1 6 GLU A 70 ASN A 72 VAL A 75 GLU A 80 SITE 2 AC1 6 HOH A 408 HOH A 477 SITE 1 AC2 18 HIS A 57 ASN A 97 THR A 98 LEU A 99 SITE 2 AC2 18 CYS A 128 ASP A 189 SER A 190 CYS A 191 SITE 3 AC2 18 GLN A 192 SER A 195 VAL A 213 SER A 214 SITE 4 AC2 18 TRP A 215 GLY A 216 GLY A 219 CYS A 220 SITE 5 AC2 18 HOH A 417 HOH A 555 CRYST1 54.600 54.600 108.536 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018315 0.010574 0.000000 0.00000 SCALE2 0.000000 0.021148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009214 0.00000