HEADER METAL TRANSPORT 24-MAR-20 6YE4 TITLE STRUCTURE OF EXBB PENTAMER FROM SERRATIA MARCESCENS BY SINGLE PARTICLE TITLE 2 CRYO ELECTRON MICROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOPOLYMER TRANSPORT PROTEIN EXBB; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: TOL-PAL SYSTEM-ASSOCIATED ACYL-COA THIOESTERASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: A 6-HISTIDINE TAG IS PRESENT AT THE C-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 GENE: EXBB, FG174_21755, PWN146_03792; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD24 KEYWDS MEMBRANE PROTEIN, IRON UPTAKE, PROTON TRANSFER, TONB COMPLEX, METAL KEYWDS 2 TRANSPORT EXPDTA ELECTRON MICROSCOPY AUTHOR V.BIOU,P.DELEPELAIRE,P.D.COUREUX,M.CHAMI REVDAT 3 04-MAY-22 6YE4 1 JRNL REVDAT 2 13-OCT-21 6YE4 1 JRNL REVDAT 1 31-MAR-21 6YE4 0 JRNL AUTH V.BIOU,R.J.D.ADAIXO,M.CHAMI,P.D.COUREUX,B.LAURENT, JRNL AUTH 2 V.Y.N.ENGUENE,G.C.DE AMORIM,N.IZADI-PRUNEYRE,C.MALOSSE, JRNL AUTH 3 J.CHAMOT-ROOKE,H.STAHLBERG,P.DELEPELAIRE JRNL TITL STRUCTURAL AND MOLECULAR DETERMINANTS FOR THE INTERACTION OF JRNL TITL 2 EXBB FROM SERRATIA MARCESCENS AND HASB, A TONB PARALOG. JRNL REF COMMUN BIOL V. 5 355 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35418619 JRNL DOI 10.1038/S42003-022-03306-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.BIOU,M.CHAMI,P.D.COUREUX,B.LAURENT,Y.NTSOGO, REMARK 1 AUTH 2 N.IZADI-PRUNEYRE,C.MALOSSE,J.CHAMOT-ROOKE,H.STAHLBERG, REMARK 1 AUTH 3 P.DELEPELAIRE REMARK 1 TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SERRATIA REMARK 1 TITL 2 MARCESCENS EXBB: DETERMINANTS OF THE INTERACTION WITH REMARK 1 TITL 3 HASB/TONB REMARK 1 REF BIORXIV 2021 REMARK 1 REFN REMARK 1 DOI 10.1101/2021.04.21.440815 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.H.SCHERES REMARK 1 TITL RELION: IMPLEMENTATION OF A BAYESIAN APPROACH TO CRYO-EM REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J. STRUCT. BIOL. V. 180 519 2012 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 23000701 REMARK 1 DOI 10.1016/J.JSB.2012.09.006 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, GCTF, RELION, UCSF REMARK 3 CHIMERA, PHENIX, RELION, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5SV0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 55.300 REMARK 3 REMARK 3 FITTING PROCEDURE : THE EXBB SEQUENCE FROM S. MARCESCENS WAS REMARK 3 MODELED BY HOMOLOGY FROM THE 5SV0 MONOMER FROM E. COLI USING REMARK 3 PHYRE SOFTWARE AND THE PENTAMER WAS GENERATED USING THE 5SV0 REMARK 3 SYMMETRY. REAL SPACE REFINEMENT WAS CARRIED OUT WITH RIGID BODY, REMARK 3 SIMULATED ANNEALING AND MORPHING STEPS. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 157111 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6YE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107181. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HOMOPENTAMER OF EXBB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : THE EXPRESSED SEQUENCE REMARK 245 CORRESPONDS TO THE MATURE SEQUENCE AFTER SIGNAL PEPTIDE CLEAVAGE. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3122 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5595.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 SER A 27 REMARK 465 ILE A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 ASN A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 THR A 36 REMARK 465 ILE A 37 REMARK 465 GLN A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 GLU A 41 REMARK 465 THR A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 MET A 45 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 THR B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 PRO B 25 REMARK 465 GLU B 26 REMARK 465 SER B 27 REMARK 465 ILE B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 ASN B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 PRO B 35 REMARK 465 THR B 36 REMARK 465 ILE B 37 REMARK 465 GLN B 38 REMARK 465 PRO B 39 REMARK 465 PRO B 40 REMARK 465 GLU B 41 REMARK 465 THR B 42 REMARK 465 ARG B 43 REMARK 465 GLY B 44 REMARK 465 MET B 45 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 465 HIS B 286 REMARK 465 HIS B 287 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 ALA C 3 REMARK 465 ALA C 4 REMARK 465 ASN C 5 REMARK 465 PRO C 6 REMARK 465 ALA C 7 REMARK 465 VAL C 8 REMARK 465 THR C 9 REMARK 465 GLU C 10 REMARK 465 SER C 11 REMARK 465 VAL C 12 REMARK 465 ALA C 13 REMARK 465 PRO C 14 REMARK 465 THR C 15 REMARK 465 THR C 16 REMARK 465 ALA C 17 REMARK 465 PRO C 18 REMARK 465 ALA C 19 REMARK 465 PRO C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 ALA C 23 REMARK 465 ALA C 24 REMARK 465 PRO C 25 REMARK 465 GLU C 26 REMARK 465 SER C 27 REMARK 465 ILE C 28 REMARK 465 THR C 29 REMARK 465 PRO C 30 REMARK 465 VAL C 31 REMARK 465 ASN C 32 REMARK 465 PRO C 33 REMARK 465 ALA C 34 REMARK 465 PRO C 35 REMARK 465 THR C 36 REMARK 465 ILE C 37 REMARK 465 GLN C 38 REMARK 465 PRO C 39 REMARK 465 PRO C 40 REMARK 465 GLU C 41 REMARK 465 THR C 42 REMARK 465 ARG C 43 REMARK 465 GLY C 44 REMARK 465 MET C 45 REMARK 465 HIS C 282 REMARK 465 HIS C 283 REMARK 465 HIS C 284 REMARK 465 HIS C 285 REMARK 465 HIS C 286 REMARK 465 HIS C 287 REMARK 465 ALA D 1 REMARK 465 PRO D 2 REMARK 465 ALA D 3 REMARK 465 ALA D 4 REMARK 465 ASN D 5 REMARK 465 PRO D 6 REMARK 465 ALA D 7 REMARK 465 VAL D 8 REMARK 465 THR D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 VAL D 12 REMARK 465 ALA D 13 REMARK 465 PRO D 14 REMARK 465 THR D 15 REMARK 465 THR D 16 REMARK 465 ALA D 17 REMARK 465 PRO D 18 REMARK 465 ALA D 19 REMARK 465 PRO D 20 REMARK 465 ALA D 21 REMARK 465 ALA D 22 REMARK 465 ALA D 23 REMARK 465 ALA D 24 REMARK 465 PRO D 25 REMARK 465 GLU D 26 REMARK 465 SER D 27 REMARK 465 ILE D 28 REMARK 465 THR D 29 REMARK 465 PRO D 30 REMARK 465 VAL D 31 REMARK 465 ASN D 32 REMARK 465 PRO D 33 REMARK 465 ALA D 34 REMARK 465 PRO D 35 REMARK 465 THR D 36 REMARK 465 ILE D 37 REMARK 465 GLN D 38 REMARK 465 PRO D 39 REMARK 465 PRO D 40 REMARK 465 GLU D 41 REMARK 465 THR D 42 REMARK 465 ARG D 43 REMARK 465 GLY D 44 REMARK 465 MET D 45 REMARK 465 HIS D 282 REMARK 465 HIS D 283 REMARK 465 HIS D 284 REMARK 465 HIS D 285 REMARK 465 HIS D 286 REMARK 465 HIS D 287 REMARK 465 ALA E 1 REMARK 465 PRO E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ASN E 5 REMARK 465 PRO E 6 REMARK 465 ALA E 7 REMARK 465 VAL E 8 REMARK 465 THR E 9 REMARK 465 GLU E 10 REMARK 465 SER E 11 REMARK 465 VAL E 12 REMARK 465 ALA E 13 REMARK 465 PRO E 14 REMARK 465 THR E 15 REMARK 465 THR E 16 REMARK 465 ALA E 17 REMARK 465 PRO E 18 REMARK 465 ALA E 19 REMARK 465 PRO E 20 REMARK 465 ALA E 21 REMARK 465 ALA E 22 REMARK 465 ALA E 23 REMARK 465 ALA E 24 REMARK 465 PRO E 25 REMARK 465 GLU E 26 REMARK 465 SER E 27 REMARK 465 ILE E 28 REMARK 465 THR E 29 REMARK 465 PRO E 30 REMARK 465 VAL E 31 REMARK 465 ASN E 32 REMARK 465 PRO E 33 REMARK 465 ALA E 34 REMARK 465 PRO E 35 REMARK 465 THR E 36 REMARK 465 ILE E 37 REMARK 465 GLN E 38 REMARK 465 PRO E 39 REMARK 465 PRO E 40 REMARK 465 GLU E 41 REMARK 465 THR E 42 REMARK 465 ARG E 43 REMARK 465 GLY E 44 REMARK 465 MET E 45 REMARK 465 HIS E 282 REMARK 465 HIS E 283 REMARK 465 HIS E 284 REMARK 465 HIS E 285 REMARK 465 HIS E 286 REMARK 465 HIS E 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 228 CB REMARK 470 ALA B 228 CB REMARK 470 ALA C 228 CB REMARK 470 ALA D 228 CB REMARK 470 ALA E 228 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 229 CB VAL A 229 CG2 -0.135 REMARK 500 VAL A 253 CB VAL A 253 CG1 -0.130 REMARK 500 VAL B 229 CB VAL B 229 CG2 -0.137 REMARK 500 VAL B 253 CB VAL B 253 CG1 -0.129 REMARK 500 VAL C 229 CB VAL C 229 CG2 -0.136 REMARK 500 VAL C 253 CB VAL C 253 CG1 -0.130 REMARK 500 VAL D 229 CB VAL D 229 CG2 -0.135 REMARK 500 VAL D 253 CB VAL D 253 CG1 -0.131 REMARK 500 VAL E 229 CB VAL E 229 CG2 -0.136 REMARK 500 VAL E 253 CB VAL E 253 CG1 -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 118 50.66 -92.87 REMARK 500 GLU B 118 50.80 -93.03 REMARK 500 GLU C 118 50.88 -92.98 REMARK 500 GLU D 118 50.63 -92.85 REMARK 500 GLU E 118 50.75 -92.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGT A 301 REMARK 610 PGT B 301 REMARK 610 PGT C 301 REMARK 610 PGT D 301 REMARK 610 PGT E 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGT C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGT D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGT E 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10789 RELATED DB: EMDB REMARK 900 STRUCTURE OF EXBB PENTAMER FROM SERRATIA MARCESCENS BY SINGLE REMARK 900 PARTICLE CRYO ELECTRON MICROSCOPY DBREF1 6YE4 A 1 281 UNP A0A1C3HJ46_SERMA DBREF2 6YE4 A A0A1C3HJ46 45 325 DBREF1 6YE4 B 1 281 UNP A0A1C3HJ46_SERMA DBREF2 6YE4 B A0A1C3HJ46 45 325 DBREF1 6YE4 C 1 281 UNP A0A1C3HJ46_SERMA DBREF2 6YE4 C A0A1C3HJ46 45 325 DBREF1 6YE4 D 1 281 UNP A0A1C3HJ46_SERMA DBREF2 6YE4 D A0A1C3HJ46 45 325 DBREF1 6YE4 E 1 281 UNP A0A1C3HJ46_SERMA DBREF2 6YE4 E A0A1C3HJ46 45 325 SEQADV 6YE4 HIS A 282 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS A 283 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS A 284 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS A 285 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS A 286 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS A 287 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 282 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 283 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 284 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 285 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 286 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS B 287 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 282 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 283 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 284 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 285 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 286 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS C 287 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 282 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 283 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 284 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 285 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 286 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS D 287 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 282 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 283 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 284 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 285 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 286 UNP A0A1C3HJ4 EXPRESSION TAG SEQADV 6YE4 HIS E 287 UNP A0A1C3HJ4 EXPRESSION TAG SEQRES 1 A 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA SEQRES 2 A 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU SEQRES 3 A 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO SEQRES 4 A 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET SEQRES 5 A 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE SEQRES 6 A 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU SEQRES 7 A 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG SEQRES 8 A 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER SEQRES 9 A 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO SEQRES 10 A 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN SEQRES 11 A 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY SEQRES 12 A 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL SEQRES 13 A 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE SEQRES 14 A 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU SEQRES 15 A 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY SEQRES 16 A 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA SEQRES 17 A 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY SEQRES 18 A 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE SEQRES 19 A 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY SEQRES 20 A 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP SEQRES 21 A 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN SEQRES 22 A 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS SEQRES 23 A 287 HIS SEQRES 1 B 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA SEQRES 2 B 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU SEQRES 3 B 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO SEQRES 4 B 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET SEQRES 5 B 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE SEQRES 6 B 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU SEQRES 7 B 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG SEQRES 8 B 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER SEQRES 9 B 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO SEQRES 10 B 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN SEQRES 11 B 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY SEQRES 12 B 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL SEQRES 13 B 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE SEQRES 14 B 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU SEQRES 15 B 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY SEQRES 16 B 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA SEQRES 17 B 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY SEQRES 18 B 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE SEQRES 19 B 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY SEQRES 20 B 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP SEQRES 21 B 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN SEQRES 22 B 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS SEQRES 23 B 287 HIS SEQRES 1 C 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA SEQRES 2 C 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU SEQRES 3 C 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO SEQRES 4 C 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET SEQRES 5 C 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE SEQRES 6 C 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU SEQRES 7 C 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG SEQRES 8 C 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER SEQRES 9 C 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO SEQRES 10 C 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN SEQRES 11 C 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY SEQRES 12 C 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL SEQRES 13 C 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE SEQRES 14 C 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU SEQRES 15 C 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY SEQRES 16 C 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA SEQRES 17 C 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY SEQRES 18 C 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE SEQRES 19 C 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY SEQRES 20 C 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP SEQRES 21 C 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN SEQRES 22 C 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS SEQRES 23 C 287 HIS SEQRES 1 D 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA SEQRES 2 D 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU SEQRES 3 D 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO SEQRES 4 D 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET SEQRES 5 D 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE SEQRES 6 D 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU SEQRES 7 D 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG SEQRES 8 D 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER SEQRES 9 D 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO SEQRES 10 D 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN SEQRES 11 D 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY SEQRES 12 D 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL SEQRES 13 D 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE SEQRES 14 D 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU SEQRES 15 D 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY SEQRES 16 D 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA SEQRES 17 D 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY SEQRES 18 D 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE SEQRES 19 D 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY SEQRES 20 D 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP SEQRES 21 D 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN SEQRES 22 D 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS SEQRES 23 D 287 HIS SEQRES 1 E 287 ALA PRO ALA ALA ASN PRO ALA VAL THR GLU SER VAL ALA SEQRES 2 E 287 PRO THR THR ALA PRO ALA PRO ALA ALA ALA ALA PRO GLU SEQRES 3 E 287 SER ILE THR PRO VAL ASN PRO ALA PRO THR ILE GLN PRO SEQRES 4 E 287 PRO GLU THR ARG GLY MET ASP LEU SER ILE TRP GLY MET SEQRES 5 E 287 TYR GLN HIS ALA ASP ALA VAL VAL LYS ALA VAL MET ILE SEQRES 6 E 287 GLY LEU VAL LEU ALA SER ILE VAL THR TRP THR ILE LEU SEQRES 7 E 287 PHE ALA LYS GLY SER GLU LEU LEU ARG ALA LYS ARG ARG SEQRES 8 E 287 LEU ARG ARG GLU GLN LEU ALA LEU ALA GLU ALA ARG SER SEQRES 9 E 287 LEU ASP GLU ALA SER GLU LEU ALA GLN ASN PHE SER PRO SEQRES 10 E 287 GLU SER VAL SER ALA VAL LEU LEU ASN ASP ALA GLN ASN SEQRES 11 E 287 GLU LEU GLU LEU SER ALA GLU SER ASN ASP ASN ASN GLY SEQRES 12 E 287 ILE LYS GLU ARG THR GLY PHE ARG LEU GLU ARG ARG VAL SEQRES 13 E 287 ALA ALA TYR SER ARG ASN MET GLY ARG GLY ASN GLY PHE SEQRES 14 E 287 LEU ALA THR ILE GLY ALA ILE SER PRO PHE VAL GLY LEU SEQRES 15 E 287 PHE GLY THR VAL TRP GLY ILE MET ASN SER PHE ILE GLY SEQRES 16 E 287 ILE ALA HIS SER GLN THR THR ASN LEU ALA VAL VAL ALA SEQRES 17 E 287 PRO GLY ILE ALA GLU ALA LEU LEU ALA THR ALA MET GLY SEQRES 18 E 287 LEU VAL ALA ALA ILE PRO ALA VAL VAL ILE TYR ASN ILE SEQRES 19 E 287 PHE ALA ARG VAL ILE SER GLY HIS ARG ALA GLN VAL GLY SEQRES 20 E 287 ASP VAL ALA ALA GLN VAL LEU LEU LEU GLN GLY ARG ASP SEQRES 21 E 287 LEU ASP LEU ALA ALA THR ALA GLU ALA LYS ARG SER GLN SEQRES 22 E 287 HIS ALA HIS GLN LEU ARG ALA GLY HIS HIS HIS HIS HIS SEQRES 23 E 287 HIS HET PGT A 301 44 HET PGT B 301 44 HET PGT C 301 44 HET PGT D 301 44 HET PGT E 301 44 HETNAM PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGT PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE HETSYN PGT PHOSPHATIDYLGLYCEROL; 1-PALMITOYL-2-OLEOYL-SN-GLYCERO- HETSYN 2 PGT 3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT) FORMUL 6 PGT 5(C40 H79 O10 P) HELIX 1 AA1 SER A 48 HIS A 55 1 8 HELIX 2 AA2 ASP A 57 ALA A 100 1 44 HELIX 3 AA3 SER A 104 GLN A 113 1 10 HELIX 4 AA4 VAL A 120 SER A 135 1 16 HELIX 5 AA5 ASP A 140 GLY A 164 1 25 HELIX 6 AA6 GLY A 166 SER A 199 1 34 HELIX 7 AA7 ASN A 203 ALA A 280 1 78 HELIX 8 AA8 SER B 48 HIS B 55 1 8 HELIX 9 AA9 ASP B 57 ALA B 100 1 44 HELIX 10 AB1 SER B 104 GLN B 113 1 10 HELIX 11 AB2 VAL B 120 SER B 135 1 16 HELIX 12 AB3 ASP B 140 GLY B 164 1 25 HELIX 13 AB4 GLY B 166 SER B 199 1 34 HELIX 14 AB5 ASN B 203 ALA B 280 1 78 HELIX 15 AB6 SER C 48 HIS C 55 1 8 HELIX 16 AB7 ASP C 57 ALA C 100 1 44 HELIX 17 AB8 SER C 104 GLN C 113 1 10 HELIX 18 AB9 VAL C 120 SER C 135 1 16 HELIX 19 AC1 ASP C 140 GLY C 164 1 25 HELIX 20 AC2 GLY C 166 SER C 199 1 34 HELIX 21 AC3 ASN C 203 ALA C 280 1 78 HELIX 22 AC4 SER D 48 HIS D 55 1 8 HELIX 23 AC5 ASP D 57 ALA D 100 1 44 HELIX 24 AC6 SER D 104 ALA D 112 1 9 HELIX 25 AC7 VAL D 120 SER D 135 1 16 HELIX 26 AC8 ASP D 140 GLY D 164 1 25 HELIX 27 AC9 GLY D 166 SER D 199 1 34 HELIX 28 AD1 ASN D 203 ALA D 280 1 78 HELIX 29 AD2 SER E 48 HIS E 55 1 8 HELIX 30 AD3 ASP E 57 ALA E 100 1 44 HELIX 31 AD4 SER E 104 ALA E 112 1 9 HELIX 32 AD5 VAL E 120 SER E 135 1 16 HELIX 33 AD6 ASP E 140 GLY E 164 1 25 HELIX 34 AD7 GLY E 166 SER E 199 1 34 HELIX 35 AD8 ASN E 203 ALA E 280 1 78 SITE 1 AC1 8 ARG A 165 GLY A 168 THR A 172 ILE A 173 SITE 2 AC1 8 TRP B 75 ILE B 234 ARG B 237 VAL B 238 SITE 1 AC2 7 ARG B 165 THR B 172 ILE B 173 TRP C 75 SITE 2 AC2 7 ILE C 234 ARG C 237 VAL C 238 SITE 1 AC3 9 ARG C 161 ARG C 165 THR C 172 ILE C 173 SITE 2 AC3 9 ILE C 176 TRP D 75 ILE D 234 ARG D 237 SITE 3 AC3 9 VAL D 238 SITE 1 AC4 8 ARG D 165 GLY D 168 THR D 172 ILE D 173 SITE 2 AC4 8 TRP E 75 ILE E 234 ARG E 237 VAL E 238 SITE 1 AC5 9 TRP A 75 ILE A 234 ARG A 237 VAL A 238 SITE 2 AC5 9 ARG E 161 ARG E 165 GLY E 168 THR E 172 SITE 3 AC5 9 ILE E 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000