HEADER TRANSPORT PROTEIN 24-MAR-20 6YE8 TITLE E.COLI'S PUTRESCINE RECEPTOR POTF COMPLEXED WITH SPERMIDINE CAVEAT 6YE8 JFN A 402 HAS WRONG CHIRALITY AT ATOM C08 JFN A 404 HAS CAVEAT 2 6YE8 WRONG CHIRALITY AT ATOM C08 JFN A 405 HAS WRONG CHIRALITY CAVEAT 3 6YE8 AT ATOM C08 JFN B 402 HAS WRONG CHIRALITY AT ATOM C08 JFN B CAVEAT 4 6YE8 403 HAS WRONG CHIRALITY AT ATOM C08 JFN B 405 HAS WRONG CAVEAT 5 6YE8 CHIRALITY AT ATOM C08 JFN B 406 HAS WRONG CHIRALITY AT ATOM CAVEAT 6 6YE8 C08 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: POTF, B0854, JW0838; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS PERIPLASMIC BINDING PROTEIN, E.COLI, SPERMIDINE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANMUGARATNAM,P.KROEGER,B.HOCKER REVDAT 3 24-JAN-24 6YE8 1 REMARK REVDAT 2 19-MAY-21 6YE8 1 JRNL REVDAT 1 20-JAN-21 6YE8 0 JRNL AUTH P.KROGER,S.SHANMUGARATNAM,N.FERRUZ,K.SCHWEIMER,B.HOCKER JRNL TITL A COMPREHENSIVE BINDING STUDY ILLUSTRATES LIGAND RECOGNITION JRNL TITL 2 IN THE PERIPLASMIC BINDING PROTEIN POTF. JRNL REF STRUCTURE V. 29 433 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33406388 JRNL DOI 10.1016/J.STR.2020.12.005 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 128236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.640 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7100 - 3.7000 1.00 8947 150 0.1466 0.1662 REMARK 3 2 3.6900 - 2.9300 1.00 8587 143 0.1486 0.1642 REMARK 3 3 2.9300 - 2.5600 1.00 8503 141 0.1588 0.1707 REMARK 3 4 2.5600 - 2.3300 1.00 8479 141 0.1468 0.1788 REMARK 3 5 2.3300 - 2.1600 1.00 8394 140 0.1418 0.1751 REMARK 3 6 2.1600 - 2.0300 1.00 8396 140 0.1470 0.1578 REMARK 3 7 2.0300 - 1.9300 1.00 8362 139 0.1598 0.1862 REMARK 3 8 1.9300 - 1.8500 1.00 8399 140 0.1726 0.2025 REMARK 3 9 1.8500 - 1.7800 1.00 8302 138 0.1882 0.1985 REMARK 3 10 1.7800 - 1.7200 1.00 8349 139 0.2100 0.2677 REMARK 3 11 1.7200 - 1.6600 1.00 8356 140 0.2370 0.2972 REMARK 3 12 1.6600 - 1.6100 1.00 8223 136 0.2567 0.2716 REMARK 3 13 1.6100 - 1.5700 1.00 8355 140 0.2881 0.2878 REMARK 3 14 1.5700 - 1.5300 1.00 8316 138 0.3035 0.3260 REMARK 3 15 1.5300 - 1.5000 0.99 8167 136 0.3259 0.3553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5749 REMARK 3 ANGLE : 1.087 7840 REMARK 3 CHIRALITY : 0.079 866 REMARK 3 PLANARITY : 0.007 1014 REMARK 3 DIHEDRAL : 20.535 2161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 29 THROUGH 370) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4702 16.2335 -19.6039 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.2047 REMARK 3 T33: 0.1803 T12: 0.0503 REMARK 3 T13: 0.0042 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.3497 L22: 1.3350 REMARK 3 L33: 0.6193 L12: 0.4902 REMARK 3 L13: 0.1722 L23: 0.1276 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.0288 S13: 0.0848 REMARK 3 S21: -0.0406 S22: -0.0356 S23: -0.0796 REMARK 3 S31: -0.0860 S32: -0.0719 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 368) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6007 -10.8496 -65.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.1422 REMARK 3 T33: 0.1880 T12: 0.0201 REMARK 3 T13: 0.0076 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.4534 L22: 1.0755 REMARK 3 L33: 1.1167 L12: 0.4921 REMARK 3 L13: -0.6759 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: -0.0380 S13: 0.2126 REMARK 3 S21: 0.0627 S22: -0.0246 S23: 0.0900 REMARK 3 S31: 0.0160 S32: -0.0726 S33: 0.0141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) IN (+ REMARK 200 --+) GEOMETRY AND A TOROIDAL REMARK 200 MIRROR (M2) REMARK 200 OPTICS : VERTICALLY COLLIMATING MIRROR REMARK 200 (M1, FOCUS AT INFINITY) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.07125 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 2.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUMSULFATE, 0.1 M BICINE PH REMARK 280 8.8, 10% JEFFAMINE M600, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 181.38867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.69433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.69433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 181.38867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 GLY B 369 REMARK 465 LYS B 370 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 360 O HOH B 505 1.58 REMARK 500 OD1 ASP B 340 O HOH B 501 2.13 REMARK 500 OD1 ASP A 303 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 175 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 40 32.59 -146.58 REMARK 500 ASP A 126 17.74 58.57 REMARK 500 ALA A 136 -160.59 -165.93 REMARK 500 SER A 227 -29.02 -142.13 REMARK 500 ASN A 288 72.88 -117.18 REMARK 500 ILE A 335 -55.10 -120.96 REMARK 500 TYR B 40 30.82 -147.09 REMARK 500 ALA B 136 -160.48 -163.78 REMARK 500 SER B 227 -26.77 -145.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 787 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 788 DISTANCE = 6.66 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ONT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ONT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YE0 RELATED DB: PDB REMARK 900 6YE0 CONTAINS THE SAME PROTEIN COMPLEXED WITH PUTRESCINE REMARK 900 RELATED ID: 6YE6 RELATED DB: PDB REMARK 900 6YE6 CONTAINS THE SAME PROTEIN COMPLEXED WITH AGMATINE REMARK 900 RELATED ID: 6YE7 RELATED DB: PDB REMARK 900 6YE7 CONTAINS THE SAME PROTEIN COMPLEXED WITH CADAVERINE DBREF 6YE8 A 27 370 UNP P31133 POTF_ECOLI 27 370 DBREF 6YE8 B 27 370 UNP P31133 POTF_ECOLI 27 370 SEQADV 6YE8 LEU A 371 UNP P31133 EXPRESSION TAG SEQADV 6YE8 GLU A 372 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 373 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 374 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 375 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 376 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 377 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS A 378 UNP P31133 EXPRESSION TAG SEQADV 6YE8 LEU B 371 UNP P31133 EXPRESSION TAG SEQADV 6YE8 GLU B 372 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 373 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 374 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 375 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 376 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 377 UNP P31133 EXPRESSION TAG SEQADV 6YE8 HIS B 378 UNP P31133 EXPRESSION TAG SEQRES 1 A 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 A 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 A 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 A 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 A 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 A 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 A 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 A 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 A 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 A 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 A 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 A 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 A 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 A 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 A 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 A 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 A 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 A 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 A 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 A 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 A 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 A 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 A 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 A 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 A 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 A 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 A 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 A 352 HIS SEQRES 1 B 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP SER ASP SEQRES 2 B 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 B 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 B 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 B 352 PHE ASP LEU VAL VAL PRO SER ALA SER PHE LEU GLU ARG SEQRES 6 B 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 B 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 B 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 B 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 B 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 B 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 B 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ALA SEQRES 13 B 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 B 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 B 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 B 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 B 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 B 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 B 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 B 352 MET ALA PHE PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 B 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 B 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 B 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 B 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 B 352 ALA ASP VAL ARG ALA LYS LEU PHE THR LEU LYS VAL GLN SEQRES 26 B 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 B 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 B 352 HIS HET SPD A 401 29 HET JFN A 402 17 HET ONT A 403 24 HET JFN A 404 17 HET JFN A 405 17 HET CL A 406 1 HET SPD B 401 29 HET JFN B 402 17 HET JFN B 403 17 HET ONT B 404 24 HET JFN B 405 17 HET JFN B 406 17 HET SO4 B 407 5 HET CL B 408 1 HETNAM SPD SPERMIDINE HETNAM JFN (2R)-1-METHOXYPROPAN-2-AMINE HETNAM ONT (2~{S})-1-(2-METHOXYETHOXY)PROPAN-2-AMINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) HETSYN JFN JEFFAMINE HETSYN ONT JEFFAMINE FORMUL 3 SPD 2(C7 H19 N3) FORMUL 4 JFN 7(C4 H11 N O) FORMUL 5 ONT 2(C6 H15 N O2) FORMUL 8 CL 2(CL 1-) FORMUL 15 SO4 O4 S 2- FORMUL 17 HOH *599(H2 O) HELIX 1 AA1 ASP A 44 GLY A 54 1 11 HELIX 2 AA2 SER A 64 GLY A 75 1 12 HELIX 3 AA3 SER A 85 THR A 94 1 10 HELIX 4 AA4 ASP A 102 LEU A 112 5 11 HELIX 5 AA5 ASP A 113 LYS A 122 1 10 HELIX 6 AA6 HIS A 123 LYS A 128 5 6 HELIX 7 AA7 VAL A 144 GLY A 152 1 9 HELIX 8 AA8 TRP A 160 LYS A 165 1 6 HELIX 9 AA9 LYS A 165 LYS A 173 1 9 HELIX 10 AB1 ALA A 182 LEU A 194 1 13 HELIX 11 AB2 LYS A 202 GLY A 208 1 7 HELIX 12 AB3 GLY A 208 ARG A 218 1 11 HELIX 13 AB4 PRO A 219 ILE A 221 5 3 HELIX 14 AB5 GLN A 228 ASN A 235 1 8 HELIX 15 AB6 ALA A 245 LYS A 259 1 15 HELIX 16 AB7 ASN A 288 LEU A 300 1 13 HELIX 17 AB8 ARG A 301 PHE A 313 1 13 HELIX 18 AB9 ALA A 321 VAL A 325 5 5 HELIX 19 AC1 SER A 326 GLU A 331 1 6 HELIX 20 AC2 PRO A 338 ALA A 343 1 6 HELIX 21 AC3 ASP A 352 SER A 368 1 17 HELIX 22 AC4 ASP B 44 GLY B 54 1 11 HELIX 23 AC5 SER B 64 GLY B 75 1 12 HELIX 24 AC6 SER B 85 THR B 94 1 10 HELIX 25 AC7 ASP B 102 LEU B 106 5 5 HELIX 26 AC8 GLU B 108 LEU B 112 5 5 HELIX 27 AC9 ASP B 113 LYS B 122 1 10 HELIX 28 AD1 HIS B 123 LYS B 128 5 6 HELIX 29 AD2 VAL B 144 GLY B 152 1 9 HELIX 30 AD3 TRP B 160 LYS B 165 1 6 HELIX 31 AD4 LYS B 165 LYS B 173 1 9 HELIX 32 AD5 ALA B 182 LEU B 194 1 13 HELIX 33 AD6 LYS B 202 GLY B 208 1 7 HELIX 34 AD7 GLY B 208 ARG B 218 1 11 HELIX 35 AD8 PRO B 219 ILE B 221 5 3 HELIX 36 AD9 GLN B 228 ASN B 235 1 8 HELIX 37 AE1 ALA B 245 LYS B 259 1 15 HELIX 38 AE2 ASN B 288 ARG B 301 1 14 HELIX 39 AE3 ARG B 301 PHE B 313 1 13 HELIX 40 AE4 ASN B 318 VAL B 325 5 8 HELIX 41 AE5 SER B 326 GLU B 331 1 6 HELIX 42 AE6 PRO B 338 ALA B 343 1 6 HELIX 43 AE7 ASP B 352 SER B 368 1 17 SHEET 1 AA1 3 LYS A 56 PHE A 62 0 SHEET 2 AA1 3 THR A 31 TRP A 37 1 N LEU A 32 O VAL A 58 SHEET 3 AA1 3 LEU A 81 VAL A 82 1 O LEU A 81 N TYR A 35 SHEET 1 AA2 5 TYR A 223 PHE A 224 0 SHEET 2 AA2 5 VAL A 177 PHE A 179 1 N PHE A 179 O TYR A 223 SHEET 3 AA2 5 VAL A 240 TRP A 244 1 O VAL A 240 N SER A 178 SHEET 4 AA2 5 MET A 131 ASN A 143 -1 N GLY A 141 O ALA A 241 SHEET 5 AA2 5 ALA A 315 ASN A 316 -1 O ALA A 315 N TRP A 135 SHEET 1 AA3 4 VAL A 264 SER A 267 0 SHEET 2 AA3 4 MET A 131 ASN A 143 -1 N TYR A 142 O SER A 265 SHEET 3 AA3 4 ALA A 273 PHE A 280 -1 O PHE A 280 N MET A 131 SHEET 4 AA3 4 LEU A 345 PHE A 346 1 O PHE A 346 N ALA A 275 SHEET 1 AA4 3 LYS B 56 PHE B 62 0 SHEET 2 AA4 3 THR B 31 TRP B 37 1 N LEU B 32 O VAL B 58 SHEET 3 AA4 3 LEU B 81 VAL B 82 1 O LEU B 81 N TYR B 35 SHEET 1 AA5 5 TYR B 223 PHE B 224 0 SHEET 2 AA5 5 VAL B 177 PHE B 179 1 N PHE B 179 O TYR B 223 SHEET 3 AA5 5 VAL B 240 TRP B 244 1 O VAL B 240 N SER B 178 SHEET 4 AA5 5 MET B 131 ASN B 143 -1 N GLY B 141 O ALA B 241 SHEET 5 AA5 5 ALA B 315 ASN B 316 -1 O ALA B 315 N TRP B 135 SHEET 1 AA6 4 VAL B 264 SER B 267 0 SHEET 2 AA6 4 MET B 131 ASN B 143 -1 N TYR B 142 O SER B 265 SHEET 3 AA6 4 ALA B 273 PHE B 280 -1 O ASP B 278 N TYR B 133 SHEET 4 AA6 4 LEU B 345 PHE B 346 1 O PHE B 346 N ALA B 275 SSBOND 1 CYS A 175 CYS A 239 1555 1555 2.02 SSBOND 2 CYS B 175 CYS B 239 1555 1555 2.05 SITE 1 AC1 14 TRP A 37 SER A 38 ASP A 39 TYR A 40 SITE 2 AC1 14 ASN A 65 SER A 85 GLU A 185 TRP A 244 SITE 3 AC1 14 ASP A 247 PHE A 276 ASP A 278 TYR A 314 SITE 4 AC1 14 HOH A 579 HOH A 657 SITE 1 AC2 3 SER A 38 SER A 227 HOH A 504 SITE 1 AC3 2 LEU A 119 ARG A 342 SITE 1 AC4 2 ALA A 95 HOH A 680 SITE 1 AC5 2 ALA A 339 ARG A 342 SITE 1 AC6 1 ALA A 327 SITE 1 AC7 13 TRP B 37 SER B 38 ASP B 39 TYR B 40 SITE 2 AC7 13 ASN B 65 SER B 85 GLU B 185 TRP B 244 SITE 3 AC7 13 ASP B 247 PHE B 276 ASP B 278 TYR B 314 SITE 4 AC7 13 HOH B 657 SITE 1 AC8 3 PHE B 62 ASP B 63 SER B 227 SITE 1 AC9 7 ARG A 361 LYS A 365 GLN B 29 LYS B 30 SITE 2 AC9 7 THR B 31 LYS B 287 ASN B 288 SITE 1 AD1 3 LEU B 116 LEU B 119 ARG B 342 SITE 1 AD2 6 LYS A 287 ARG B 357 VAL B 358 ARG B 361 SITE 2 AD2 6 HOH B 659 HOH B 771 SITE 1 AD3 4 SER B 326 ALA B 327 HOH B 514 HOH B 590 SITE 1 AD4 6 ALA B 86 SER B 87 PHE B 276 PHE B 277 SITE 2 AD4 6 HOH B 601 HOH B 636 CRYST1 70.830 70.830 272.083 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014118 0.008151 0.000000 0.00000 SCALE2 0.000000 0.016302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003675 0.00000