HEADER TRANSFERASE 27-MAR-20 6YFZ TITLE CRYSTAL STRUCTURE OF MKK7 (MAP2K7), APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPKK 7,JNK-ACTIVATING KINASE 2,MAPK/ERK KINASE 7,MEK 7, COMPND 5 STRESS-ACTIVATED PROTEIN KINASE KINASE 4,SAPKK4,C-JUN N-TERMINAL COMPND 6 KINASE KINASE 2,JNKK 2; COMPND 7 EC: 2.7.12.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K7, JNKK2, MEK7, MKK7, PRKMK7, SKK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, MKK7, MEK7, MAP2K7, MAP2K, MEK, JNK KEYWDS 2 SIGNALING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6YFZ 1 REMARK REVDAT 3 28-OCT-20 6YFZ 1 JRNL REVDAT 2 02-SEP-20 6YFZ 1 JRNL REVDAT 1 12-AUG-20 6YFZ 0 JRNL AUTH M.SCHRODER,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,A.CHAIKUAD JRNL TITL CATALYTIC DOMAIN PLASTICITY OF MKK7 REVEALS STRUCTURAL JRNL TITL 2 MECHANISMS OF ALLOSTERIC ACTIVATION AND DIVERSE TARGETING JRNL TITL 3 OPPORTUNITIES. JRNL REF CELL CHEM BIOL V. 27 1285 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32783966 JRNL DOI 10.1016/J.CHEMBIOL.2020.07.014 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2384 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3288 ; 1.678 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5512 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;32.378 ;23.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;14.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2716 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3688 36.4957 0.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.1560 REMARK 3 T33: 0.0287 T12: 0.0144 REMARK 3 T13: -0.0124 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 5.5450 L22: 3.2594 REMARK 3 L33: 3.4245 L12: 1.4737 REMARK 3 L13: -1.8816 L23: -0.4225 REMARK 3 S TENSOR REMARK 3 S11: 0.2124 S12: 0.1848 S13: 0.3295 REMARK 3 S21: -0.0229 S22: -0.1399 S23: -0.0393 REMARK 3 S31: -0.3401 S32: 0.0847 S33: -0.0725 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1972 28.7442 12.6756 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.0914 REMARK 3 T33: 0.0141 T12: -0.0651 REMARK 3 T13: 0.0072 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 2.7978 L22: 2.0017 REMARK 3 L33: 0.6576 L12: -2.3626 REMARK 3 L13: 0.2454 L23: -0.1436 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0243 S13: -0.0485 REMARK 3 S21: 0.0511 S22: 0.0169 S23: 0.0461 REMARK 3 S31: -0.0872 S32: -0.0309 S33: 0.0464 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4070 13.9663 25.2069 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.1233 REMARK 3 T33: 0.0549 T12: 0.0609 REMARK 3 T13: 0.0697 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 3.5795 L22: 4.2265 REMARK 3 L33: 1.9724 L12: 2.9511 REMARK 3 L13: -0.0439 L23: -0.8823 REMARK 3 S TENSOR REMARK 3 S11: -0.1494 S12: -0.2032 S13: -0.1964 REMARK 3 S21: 0.3836 S22: 0.0776 S23: 0.0254 REMARK 3 S31: 0.0627 S32: 0.0008 S33: 0.0718 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3364 24.7764 6.7784 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1143 REMARK 3 T33: 0.1433 T12: -0.0263 REMARK 3 T13: 0.0151 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.0496 L22: 2.2493 REMARK 3 L33: 7.6809 L12: 0.1549 REMARK 3 L13: 2.0897 L23: 1.3424 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: 0.1903 S13: 0.0382 REMARK 3 S21: -0.2212 S22: 0.0536 S23: -0.1767 REMARK 3 S31: -0.1818 S32: 0.2695 S33: -0.1153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02823 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.84300 REMARK 200 R SYM FOR SHELL (I) : 0.84300 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.15 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.73000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.22550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.22550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 284 REMARK 465 VAL A 285 REMARK 465 ASP A 286 REMARK 465 SER A 287 REMARK 465 LYS A 288 REMARK 465 ALA A 289 REMARK 465 LYS A 290 REMARK 465 THR A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 ALA A 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 306 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 316 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 107.90 -58.28 REMARK 500 GLU A 141 135.35 -39.73 REMARK 500 GLN A 149 -44.96 -132.74 REMARK 500 GLN A 149 -41.46 -135.01 REMARK 500 ASP A 259 54.56 -155.26 REMARK 500 LEU A 377 35.98 -95.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 296 ALA A 297 147.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 6YFZ A 116 421 UNP O14733 MP2K7_HUMAN 116 421 SEQADV 6YFZ SER A 0 UNP O14733 EXPRESSION TAG SEQRES 1 A 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 A 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 A 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 A 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 A 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 A 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 A 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 A 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 A 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 A 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 A 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 A 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 A 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 A 307 LEU VAL ASP SER LYS ALA LYS THR ARG SER ALA GLY CYS SEQRES 15 A 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 A 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 A 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 A 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 A 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 A 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 A 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 A 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 A 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 A 307 MET ALA LYS THR GLU SER PRO ARG FORMUL 2 HOH *233(H2 O) HELIX 1 AA1 GLU A 132 ASN A 134 5 3 HELIX 2 AA2 ASN A 172 LYS A 188 1 17 HELIX 3 AA3 ALA A 219 GLN A 227 1 9 HELIX 4 AA4 PRO A 231 GLY A 254 1 24 HELIX 5 AA5 LYS A 261 SER A 263 5 3 HELIX 6 AA6 GLY A 295 MET A 300 5 6 HELIX 7 AA7 ALA A 301 ASP A 306 1 6 HELIX 8 AA8 ASP A 316 GLY A 334 1 19 HELIX 9 AA9 THR A 343 GLU A 354 1 12 HELIX 10 AB1 SER A 366 LEU A 377 1 12 HELIX 11 AB2 ASP A 380 ARG A 384 5 5 HELIX 12 AB3 LYS A 386 LEU A 391 1 6 HELIX 13 AB4 HIS A 393 LEU A 402 1 10 HELIX 14 AB5 ASP A 405 THR A 417 1 13 SHEET 1 AA1 2 TYR A 121 ILE A 124 0 SHEET 2 AA1 2 GLN A 127 GLN A 130 -1 O TYR A 129 N LEU A 122 SHEET 1 AA2 5 LEU A 136 GLU A 141 0 SHEET 2 AA2 5 VAL A 150 PHE A 155 -1 O LYS A 152 N GLY A 140 SHEET 3 AA2 5 VAL A 161 ARG A 168 -1 O ILE A 162 N MET A 153 SHEET 4 AA2 5 ASP A 207 MET A 212 -1 O MET A 212 N ALA A 163 SHEET 5 AA2 5 CYS A 198 ILE A 203 -1 N GLY A 200 O ALA A 211 SHEET 1 AA3 3 THR A 217 CYS A 218 0 SHEET 2 AA3 3 ILE A 265 LEU A 267 -1 O LEU A 267 N THR A 217 SHEET 3 AA3 3 ILE A 273 LEU A 275 -1 O LYS A 274 N LEU A 266 CRYST1 57.460 74.451 81.770 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012229 0.00000