HEADER TRANSFERASE 27-MAR-20 6YG6 TITLE CRYSTAL STRUCTURE OF MKK7 (MAP2K7) COVALENTLY BOUND WITH TYPE-II TITLE 2 INHIBITOR TL10-105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAPKK 7,JNK-ACTIVATING KINASE 2,MAPK/ERK KINASE 7,MEK 7, COMPND 5 STRESS-ACTIVATED PROTEIN KINASE KINASE 4,SAPKK4,C-JUN N-TERMINAL COMPND 6 KINASE KINASE 2,JNKK 2; COMPND 7 EC: 2.7.12.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K7, JNKK2, MEK7, MKK7, PRKMK7, SKK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, KINASE INHIBITOR, MKK7, MEK7, MAP2K7, MAP2K, MEK, JNK KEYWDS 2 SIGNALING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6YG6 1 REMARK REVDAT 3 28-OCT-20 6YG6 1 JRNL REVDAT 2 02-SEP-20 6YG6 1 JRNL REVDAT 1 12-AUG-20 6YG6 0 JRNL AUTH M.SCHRODER,L.TAN,J.WANG,Y.LIANG,N.S.GRAY,S.KNAPP,A.CHAIKUAD JRNL TITL CATALYTIC DOMAIN PLASTICITY OF MKK7 REVEALS STRUCTURAL JRNL TITL 2 MECHANISMS OF ALLOSTERIC ACTIVATION AND DIVERSE TARGETING JRNL TITL 3 OPPORTUNITIES. JRNL REF CELL CHEM BIOL V. 27 1285 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32783966 JRNL DOI 10.1016/J.CHEMBIOL.2020.07.014 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2452 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.82000 REMARK 3 B22 (A**2) : -4.17000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4748 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4636 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6393 ; 1.336 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10700 ; 1.016 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;34.051 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;15.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5428 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1042 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 120 419 B 120 419 34370 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3528 -16.7743 21.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.2179 REMARK 3 T33: 0.1214 T12: -0.0529 REMARK 3 T13: -0.0357 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 3.8801 L22: 2.8097 REMARK 3 L33: 6.9070 L12: -0.9200 REMARK 3 L13: -2.5701 L23: 1.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.6316 S13: 0.0899 REMARK 3 S21: 0.4480 S22: -0.0040 S23: 0.0887 REMARK 3 S31: 0.2275 S32: -0.0725 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7999 6.1068 11.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.0598 T22: 0.0504 REMARK 3 T33: 0.0044 T12: 0.0032 REMARK 3 T13: -0.0113 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.7623 L22: 4.2586 REMARK 3 L33: 2.3254 L12: 0.6187 REMARK 3 L13: -0.6246 L23: -0.3185 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.2777 S13: -0.0276 REMARK 3 S21: 0.1608 S22: -0.0060 S23: -0.1107 REMARK 3 S31: -0.1285 S32: 0.0035 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): -28.1380 -16.4620 -15.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.3191 REMARK 3 T33: 0.1860 T12: 0.1073 REMARK 3 T13: 0.0657 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 4.4024 L22: 7.2011 REMARK 3 L33: 8.5157 L12: 1.7675 REMARK 3 L13: 1.2070 L23: -0.8948 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.7321 S13: -0.1925 REMARK 3 S21: -0.7985 S22: -0.0981 S23: -0.0901 REMARK 3 S31: 0.5453 S32: 0.0875 S33: 0.1387 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 168 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3283 -3.0233 -30.8739 REMARK 3 T TENSOR REMARK 3 T11: 0.7991 T22: 0.8970 REMARK 3 T33: 0.6010 T12: 0.0020 REMARK 3 T13: 0.0368 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 11.0734 L22: 6.2624 REMARK 3 L33: 5.9906 L12: -5.3576 REMARK 3 L13: -0.3547 L23: -4.4328 REMARK 3 S TENSOR REMARK 3 S11: -0.3390 S12: 0.0669 S13: 1.1790 REMARK 3 S21: 0.2742 S22: 0.2361 S23: -0.5354 REMARK 3 S31: -0.1528 S32: 0.0636 S33: 0.1030 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 179 B 307 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0916 2.4179 -13.7031 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.2960 REMARK 3 T33: 0.1553 T12: 0.0739 REMARK 3 T13: -0.0340 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.5988 L22: 5.8583 REMARK 3 L33: 3.0348 L12: -1.5733 REMARK 3 L13: -1.3714 L23: 0.4716 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.2448 S13: -0.2356 REMARK 3 S21: -0.4786 S22: -0.2759 S23: -0.1695 REMARK 3 S31: 0.2196 S32: 0.3233 S33: 0.2868 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 308 B 318 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9721 21.4948 -22.8429 REMARK 3 T TENSOR REMARK 3 T11: 0.6253 T22: 0.6897 REMARK 3 T33: 0.5473 T12: -0.0661 REMARK 3 T13: -0.0513 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 6.0542 L22: 1.7386 REMARK 3 L33: 12.9159 L12: 3.1787 REMARK 3 L13: -8.8282 L23: -4.6858 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: 0.0797 S13: -0.0754 REMARK 3 S21: 0.0118 S22: -0.1729 S23: -0.0449 REMARK 3 S31: -0.1571 S32: 0.0523 S33: 0.0865 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 319 B 419 REMARK 3 ORIGIN FOR THE GROUP (A): -41.5821 14.9440 -11.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1185 REMARK 3 T33: 0.0966 T12: 0.0616 REMARK 3 T13: -0.0217 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 3.6009 L22: 2.9551 REMARK 3 L33: 4.2207 L12: 0.2333 REMARK 3 L13: -0.8884 L23: -1.3654 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.2348 S13: -0.0347 REMARK 3 S21: -0.1459 S22: -0.1133 S23: 0.0254 REMARK 3 S31: -0.1912 S32: 0.0376 S33: 0.0106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 47.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.90600 REMARK 200 R SYM FOR SHELL (I) : 0.90600 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.15 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.96700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 MET A 116 REMARK 465 LYS A 117 REMARK 465 GLN A 118 REMARK 465 GLY A 145 REMARK 465 THR A 146 REMARK 465 CYS A 147 REMARK 465 ILE A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 ARG A 283 REMARK 465 LEU A 284 REMARK 465 VAL A 285 REMARK 465 ASP A 286 REMARK 465 ASP A 287 REMARK 465 LYS A 288 REMARK 465 ALA A 289 REMARK 465 LYS A 290 REMARK 465 ASP A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 PRO A 420 REMARK 465 ARG A 421 REMARK 465 SER B 115 REMARK 465 MET B 116 REMARK 465 LYS B 117 REMARK 465 GLN B 118 REMARK 465 THR B 119 REMARK 465 SER B 144 REMARK 465 GLY B 145 REMARK 465 THR B 146 REMARK 465 CYS B 147 REMARK 465 ILE B 280 REMARK 465 SER B 281 REMARK 465 GLY B 282 REMARK 465 ARG B 283 REMARK 465 LEU B 284 REMARK 465 VAL B 285 REMARK 465 ASP B 286 REMARK 465 ASP B 287 REMARK 465 LYS B 288 REMARK 465 ALA B 289 REMARK 465 LYS B 290 REMARK 465 ASP B 291 REMARK 465 ARG B 292 REMARK 465 SER B 293 REMARK 465 ALA B 294 REMARK 465 PRO B 420 REMARK 465 ARG B 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 419 OG REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 SER B 419 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 258 -1.60 80.87 REMARK 500 ASP A 259 49.45 -150.90 REMARK 500 ASP A 316 -150.06 -123.03 REMARK 500 ASN A 340 73.32 56.65 REMARK 500 LEU A 377 40.57 -94.04 REMARK 500 ARG B 258 -0.01 81.94 REMARK 500 ASP B 259 46.86 -152.04 REMARK 500 ASP B 316 -141.45 -115.83 REMARK 500 ASN B 340 71.53 59.10 REMARK 500 LEU B 377 41.39 -93.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 315 ASP B 316 -141.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OQ8 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide OQ8 B 504 and CYS B REMARK 800 218 DBREF 6YG6 A 116 421 UNP O14733 MP2K7_HUMAN 116 421 DBREF 6YG6 B 116 421 UNP O14733 MP2K7_HUMAN 116 421 SEQADV 6YG6 SER A 115 UNP O14733 EXPRESSION TAG SEQADV 6YG6 ASP A 287 UNP O14733 SER 271 ENGINEERED MUTATION SEQADV 6YG6 ASP A 291 UNP O14733 THR 275 ENGINEERED MUTATION SEQADV 6YG6 SER B 115 UNP O14733 EXPRESSION TAG SEQADV 6YG6 ASP B 287 UNP O14733 SER 271 ENGINEERED MUTATION SEQADV 6YG6 ASP B 291 UNP O14733 THR 275 ENGINEERED MUTATION SEQRES 1 A 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 A 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 A 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 A 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 A 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 A 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 A 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 A 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 A 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 A 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 A 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 A 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 A 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 A 307 LEU VAL ASP ASP LYS ALA LYS ASP ARG SER ALA GLY CYS SEQRES 15 A 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 A 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 A 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 A 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 A 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 A 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 A 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 A 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 A 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 A 307 MET ALA LYS THR GLU SER PRO ARG SEQRES 1 B 307 SER MET LYS GLN THR GLY TYR LEU THR ILE GLY GLY GLN SEQRES 2 B 307 ARG TYR GLN ALA GLU ILE ASN ASP LEU GLU ASN LEU GLY SEQRES 3 B 307 GLU MET GLY SER GLY THR CYS GLY GLN VAL TRP LYS MET SEQRES 4 B 307 ARG PHE ARG LYS THR GLY HIS VAL ILE ALA VAL LYS GLN SEQRES 5 B 307 MET ARG ARG SER GLY ASN LYS GLU GLU ASN LYS ARG ILE SEQRES 6 B 307 LEU MET ASP LEU ASP VAL VAL LEU LYS SER HIS ASP CYS SEQRES 7 B 307 PRO TYR ILE VAL GLN CYS PHE GLY THR PHE ILE THR ASN SEQRES 8 B 307 THR ASP VAL PHE ILE ALA MET GLU LEU MET GLY THR CYS SEQRES 9 B 307 ALA GLU LYS LEU LYS LYS ARG MET GLN GLY PRO ILE PRO SEQRES 10 B 307 GLU ARG ILE LEU GLY LYS MET THR VAL ALA ILE VAL LYS SEQRES 11 B 307 ALA LEU TYR TYR LEU LYS GLU LYS HIS GLY VAL ILE HIS SEQRES 12 B 307 ARG ASP VAL LYS PRO SER ASN ILE LEU LEU ASP GLU ARG SEQRES 13 B 307 GLY GLN ILE LYS LEU CYS ASP PHE GLY ILE SER GLY ARG SEQRES 14 B 307 LEU VAL ASP ASP LYS ALA LYS ASP ARG SER ALA GLY CYS SEQRES 15 B 307 ALA ALA TYR MET ALA PRO GLU ARG ILE ASP PRO PRO ASP SEQRES 16 B 307 PRO THR LYS PRO ASP TYR ASP ILE ARG ALA ASP VAL TRP SEQRES 17 B 307 SER LEU GLY ILE SER LEU VAL GLU LEU ALA THR GLY GLN SEQRES 18 B 307 PHE PRO TYR LYS ASN CYS LYS THR ASP PHE GLU VAL LEU SEQRES 19 B 307 THR LYS VAL LEU GLN GLU GLU PRO PRO LEU LEU PRO GLY SEQRES 20 B 307 HIS MET GLY PHE SER GLY ASP PHE GLN SER PHE VAL LYS SEQRES 21 B 307 ASP CYS LEU THR LYS ASP HIS ARG LYS ARG PRO LYS TYR SEQRES 22 B 307 ASN LYS LEU LEU GLU HIS SER PHE ILE LYS ARG TYR GLU SEQRES 23 B 307 THR LEU GLU VAL ASP VAL ALA SER TRP PHE LYS ASP VAL SEQRES 24 B 307 MET ALA LYS THR GLU SER PRO ARG HET EDO A 501 4 HET OQ8 A 502 46 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HET OQ8 B 504 46 HETNAM EDO 1,2-ETHANEDIOL HETNAM OQ8 ~{N}-[4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-3- HETNAM 2 OQ8 (TRIFLUOROMETHYL)PHENYL]-4-METHYL-3-[2-[[(3~{S})-1- HETNAM 3 OQ8 PROPANOYLPYRROLIDIN-3-YL]AMINO]PYRIMIDIN-4-YL]OXY- HETNAM 4 OQ8 BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 4 OQ8 2(C33 H40 F3 N7 O3) FORMUL 9 HOH *163(H2 O) HELIX 1 AA1 GLU A 132 ASN A 134 5 3 HELIX 2 AA2 ASN A 172 LYS A 188 1 17 HELIX 3 AA3 ALA A 219 GLN A 227 1 9 HELIX 4 AA4 PRO A 231 GLY A 254 1 24 HELIX 5 AA5 LYS A 261 SER A 263 5 3 HELIX 6 AA6 ALA A 301 ASP A 306 1 6 HELIX 7 AA7 ILE A 317 GLY A 334 1 18 HELIX 8 AA8 THR A 343 GLU A 354 1 12 HELIX 9 AA9 SER A 366 LEU A 377 1 12 HELIX 10 AB1 ASP A 380 ARG A 384 5 5 HELIX 11 AB2 LYS A 386 GLU A 392 1 7 HELIX 12 AB3 HIS A 393 LEU A 402 1 10 HELIX 13 AB4 ASP A 405 LYS A 416 1 12 HELIX 14 AB5 GLU B 132 ASN B 134 5 3 HELIX 15 AB6 ASN B 172 LYS B 188 1 17 HELIX 16 AB7 ALA B 219 GLN B 227 1 9 HELIX 17 AB8 PRO B 231 GLY B 254 1 24 HELIX 18 AB9 LYS B 261 SER B 263 5 3 HELIX 19 AC1 ALA B 301 ASP B 306 1 6 HELIX 20 AC2 ILE B 317 GLY B 334 1 18 HELIX 21 AC3 THR B 343 GLU B 354 1 12 HELIX 22 AC4 SER B 366 LEU B 377 1 12 HELIX 23 AC5 ASP B 380 ARG B 384 5 5 HELIX 24 AC6 LYS B 386 LEU B 391 1 6 HELIX 25 AC7 HIS B 393 LEU B 402 1 10 HELIX 26 AC8 ASP B 405 LYS B 416 1 12 SHEET 1 AA1 2 GLY A 120 ILE A 124 0 SHEET 2 AA1 2 GLN A 127 ALA A 131 -1 O TYR A 129 N LEU A 122 SHEET 1 AA2 5 LEU A 136 GLU A 141 0 SHEET 2 AA2 5 GLN A 149 PHE A 155 -1 O LYS A 152 N GLY A 140 SHEET 3 AA2 5 VAL A 161 ARG A 168 -1 O GLN A 166 N GLN A 149 SHEET 4 AA2 5 ASP A 207 GLU A 213 -1 O MET A 212 N ALA A 163 SHEET 5 AA2 5 CYS A 198 ILE A 203 -1 N PHE A 202 O PHE A 209 SHEET 1 AA3 3 THR A 217 CYS A 218 0 SHEET 2 AA3 3 ILE A 265 LEU A 267 -1 O LEU A 267 N THR A 217 SHEET 3 AA3 3 ILE A 273 LEU A 275 -1 O LYS A 274 N LEU A 266 SHEET 1 AA4 2 TYR B 121 ILE B 124 0 SHEET 2 AA4 2 GLN B 127 GLN B 130 -1 O TYR B 129 N LEU B 122 SHEET 1 AA5 5 LEU B 136 GLU B 141 0 SHEET 2 AA5 5 GLN B 149 PHE B 155 -1 O LYS B 152 N LEU B 139 SHEET 3 AA5 5 VAL B 161 ARG B 168 -1 O GLN B 166 N GLN B 149 SHEET 4 AA5 5 ASP B 207 GLU B 213 -1 O MET B 212 N ALA B 163 SHEET 5 AA5 5 CYS B 198 ILE B 203 -1 N PHE B 202 O PHE B 209 SHEET 1 AA6 3 THR B 217 CYS B 218 0 SHEET 2 AA6 3 ILE B 265 LEU B 267 -1 O LEU B 267 N THR B 217 SHEET 3 AA6 3 ILE B 273 LEU B 275 -1 O LYS B 274 N LEU B 266 SSBOND 1 CYS A 296 CYS A 341 1555 1555 2.04 SSBOND 2 CYS B 296 CYS B 341 1555 1555 2.01 LINK SG CYS A 218 C29 OQ8 A 502 1555 1555 1.83 LINK SG CYS B 218 C29 OQ8 B 504 1555 1555 1.82 SITE 1 AC1 2 ARG A 225 VAL A 413 SITE 1 AC2 20 LYS A 165 VAL A 186 ILE A 195 VAL A 196 SITE 2 AC2 20 MET A 212 GLU A 213 MET A 215 GLY A 216 SITE 3 AC2 20 CYS A 218 LYS A 221 VAL A 255 ILE A 256 SITE 4 AC2 20 HIS A 257 ARG A 258 SER A 263 LEU A 275 SITE 5 AC2 20 CYS A 276 ASP A 277 PHE A 278 HOH A 677 SITE 1 AC3 3 GLU B 232 ARG B 398 TYR B 399 SITE 1 AC4 2 GLY B 364 HOH B 612 SITE 1 AC5 4 ARG B 225 VAL B 413 MET B 414 LYS B 416 SITE 1 AC6 23 ASP B 182 VAL B 186 VAL B 196 MET B 212 SITE 2 AC6 23 GLU B 213 MET B 215 GLY B 216 THR B 217 SITE 3 AC6 23 ALA B 219 GLU B 220 LYS B 221 LEU B 222 SITE 4 AC6 23 VAL B 255 ILE B 256 HIS B 257 SER B 263 SITE 5 AC6 23 ILE B 265 LEU B 266 LEU B 275 CYS B 276 SITE 6 AC6 23 ASP B 277 PHE B 278 HOH B 650 CRYST1 72.651 69.934 73.763 90.00 119.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013764 0.000000 0.007744 0.00000 SCALE2 0.000000 0.014299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015555 0.00000