HEADER TRANSPORT PROTEIN 27-MAR-20 6YG9
TITLE CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN (HSA) IN COMPLEX WITH GN-07.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERUM ALBUMIN;
COMPND 3 CHAIN: A
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606
KEYWDS DRUG TRANSPORT, FATTY ACID BINDING, LIVER IMAGING, NASH, HUMAN SERUM
KEYWDS 2 ALBUMIN, TRANSPORT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR H.A.SCHREUDER,A.LIESUM
REVDAT 3 09-OCT-24 6YG9 1 REMARK
REVDAT 2 01-MAY-24 6YG9 1 REMARK
REVDAT 1 13-JAN-21 6YG9 0
JRNL AUTH A.MISHRA,T.R.CASTANEDA,E.BADER,B.ELSHORST,S.CUMMINGS,
JRNL AUTH 2 P.SCHERER,D.S.BANGARI,C.LOEWE,H.SCHREUDER,C.POVERLEIN,
JRNL AUTH 3 M.HELMS,S.JONES,G.ZECH,T.LICHER,M.WAGNER,M.SCHUDOK,
JRNL AUTH 4 M.DE HOOP,A.T.PLOWRIGHT,J.ATZRODT,A.KANNT,I.LAITINEN,
JRNL AUTH 5 V.DERDAU
JRNL TITL TRIANTENNARY GALNAC MOLECULAR IMAGING PROBES FOR MONITORING
JRNL TITL 2 HEPATOCYTE FUNCTION IN A RAT MODEL OF NONALCOHOLIC
JRNL TITL 3 STEATOHEPATITIS.
JRNL REF ADV SCI V. 7 02997 2020
JRNL REFN ESSN 2198-3844
JRNL PMID 33344141
JRNL DOI 10.1002/ADVS.202002997
REMARK 2
REMARK 2 RESOLUTION. 1.89 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.51
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 3 NUMBER OF REFLECTIONS : 53531
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.243
REMARK 3 R VALUE (WORKING SET) : 0.239
REMARK 3 FREE R VALUE : 0.313
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 2690
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.25
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3836
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2500
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3621
REMARK 3 BIN R VALUE (WORKING SET) : 0.2450
REMARK 3 BIN FREE R VALUE : 0.3250
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 215
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4479
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 144
REMARK 3 SOLVENT ATOMS : 662
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 31.56
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.59
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -4.47700
REMARK 3 B22 (A**2) : 0.61850
REMARK 3 B33 (A**2) : 3.85860
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -4.01710
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.203
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.197
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.185
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.188
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4735 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6360 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1753 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 127 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 667 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4735 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 594 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 6502 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.20
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.81
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.99
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6YG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1292107572.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-AUG-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.00
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 1M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53533
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890
REMARK 200 RESOLUTION RANGE LOW (A) : 58.510
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3
REMARK 200 DATA REDUNDANCY : 2.900
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9
REMARK 200 DATA REDUNDANCY IN SHELL : 2.70
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: IN-HOUSE STRUCTURE
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 52.65
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: ESSENTIALLY DEFATTED HUMAN SERUM
REMARK 280 ALBUMIN FROM SIGMA WAS PURIFIED BY SIZE EXCLUSION CHROMATOGRAPHY
REMARK 280 TO OBTAIN PURE MONOMERIC PROTEIN. THE PURIFIED HSA WAS DISSOLVED
REMARK 280 IN 20 MM POTASSIUM PHOSPHATE (PH 7.0) AND CONCENTRATED TO 120 MG/
REMARK 280 ML. TO THE HSA SOLUTION WE ADDED 10 MM CPDX AND 3 MM MYRISTATE,
REMARK 280 DISSOLVED DMSO. THE FINAL CONCENTRATION OF DMSO WAS 5% (V/V).
REMARK 280 THE CRYSTAL WAS GROWN BY THE HANGING DROP VAPOR DIFFUSION METHOD
REMARK 280 USING A RESERVOIR SOLUTION CONTAINING 50 MM SODIUM-POTASSIUM-
REMARK 280 PHOSPHATE (PH 7.0), AND 30% POLYETHYLENE GLYCOL 3350. FOR
REMARK 280 CRYSTALLIZATION 1 UL OF HSA/CPDX SOLUTION WAS EQUILIBRATED
REMARK 280 AGAINST 1 UL OF RESERVOIR SOLUTION. AFTER ABOUT ONE-WEEK,
REMARK 280 COLORLESS CRYSTALS APPEARED., PH 7.00, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.86100
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.07050
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.86100
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.07050
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 28610 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1353 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1354 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1362 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 1
REMARK 465 ALA A 363
REMARK 465 ALA A 364
REMARK 465 ASP A 365
REMARK 465 ALA A 553
REMARK 465 PHE A 554
REMARK 465 VAL A 555
REMARK 465 GLU A 556
REMARK 465 LYS A 557
REMARK 465 CYS A 558
REMARK 465 CYS A 559
REMARK 465 LYS A 560
REMARK 465 ALA A 561
REMARK 465 ASP A 562
REMARK 465 ASP A 563
REMARK 465 LYS A 564
REMARK 465 LEU A 585
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 HIS A 367 CG ND1 CD2 CE1 NE2
REMARK 470 GLU A 542 CG CD OE1 OE2
REMARK 470 GLN A 543 CD OE1 NE2
REMARK 470 LYS A 545 CG CD CE NZ
REMARK 470 VAL A 547 CG1 CG2
REMARK 470 MET A 548 CG SD CE
REMARK 470 ASP A 549 CG OD1 OD2
REMARK 470 ASP A 550 CG OD1 OD2
REMARK 470 PHE A 551 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLU A 565 CG CD OE1 OE2
REMARK 470 THR A 566 OG1 CG2
REMARK 470 CYS A 567 SG
REMARK 470 PHE A 568 CG CD1 CD2 CE1 CE2 CZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 CYS A 369 C - N - CA ANGL. DEV. = 15.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 31 54.49 -102.47
REMARK 500 ASN A 109 -94.38 -72.99
REMARK 500 PRO A 110 -144.78 -88.49
REMARK 500 ASN A 130 84.23 -165.81
REMARK 500 ILE A 271 -59.11 -125.84
REMARK 500 LYS A 281 155.79 -45.66
REMARK 500 ALA A 300 -38.80 89.53
REMARK 500 VAL A 310 -48.00 -137.29
REMARK 500 SER A 312 130.80 -36.96
REMARK 500 ALA A 322 73.90 -175.04
REMARK 500 HIS A 367 -75.84 10.43
REMARK 500 TYR A 370 -112.73 -73.02
REMARK 500 ALA A 371 -48.96 62.59
REMARK 500 LYS A 541 120.84 166.12
REMARK 500 GLU A 542 -100.88 -73.15
REMARK 500 LEU A 544 -74.33 -68.34
REMARK 500 VAL A 547 -140.61 -86.99
REMARK 500 MET A 548 150.20 63.06
REMARK 500 ASP A 550 -134.60 -113.13
REMARK 500 PHE A 551 -48.24 -160.23
REMARK 500 THR A 566 173.70 90.07
REMARK 500 CYS A 567 145.64 178.01
REMARK 500 ALA A 569 -155.81 -114.56
REMARK 500 GLU A 570 -86.65 63.40
REMARK 500 LEU A 583 74.54 -160.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1328 DISTANCE = 5.82 ANGSTROMS
REMARK 525 HOH A1329 DISTANCE = 5.90 ANGSTROMS
REMARK 525 HOH A1330 DISTANCE = 5.90 ANGSTROMS
REMARK 525 HOH A1331 DISTANCE = 5.96 ANGSTROMS
REMARK 525 HOH A1332 DISTANCE = 5.98 ANGSTROMS
REMARK 525 HOH A1333 DISTANCE = 6.07 ANGSTROMS
REMARK 525 HOH A1334 DISTANCE = 6.09 ANGSTROMS
REMARK 525 HOH A1335 DISTANCE = 6.14 ANGSTROMS
REMARK 525 HOH A1336 DISTANCE = 6.15 ANGSTROMS
REMARK 525 HOH A1337 DISTANCE = 6.24 ANGSTROMS
REMARK 525 HOH A1338 DISTANCE = 6.28 ANGSTROMS
REMARK 525 HOH A1339 DISTANCE = 6.34 ANGSTROMS
REMARK 525 HOH A1340 DISTANCE = 6.39 ANGSTROMS
REMARK 525 HOH A1341 DISTANCE = 6.58 ANGSTROMS
REMARK 525 HOH A1342 DISTANCE = 6.59 ANGSTROMS
REMARK 525 HOH A1343 DISTANCE = 6.70 ANGSTROMS
REMARK 525 HOH A1344 DISTANCE = 6.79 ANGSTROMS
REMARK 525 HOH A1345 DISTANCE = 6.80 ANGSTROMS
REMARK 525 HOH A1346 DISTANCE = 6.95 ANGSTROMS
REMARK 525 HOH A1347 DISTANCE = 6.98 ANGSTROMS
REMARK 525 HOH A1348 DISTANCE = 7.22 ANGSTROMS
REMARK 525 HOH A1349 DISTANCE = 7.22 ANGSTROMS
REMARK 525 HOH A1350 DISTANCE = 7.60 ANGSTROMS
REMARK 525 HOH A1351 DISTANCE = 7.68 ANGSTROMS
REMARK 525 HOH A1352 DISTANCE = 7.98 ANGSTROMS
REMARK 525 HOH A1353 DISTANCE = 8.02 ANGSTROMS
REMARK 525 HOH A1354 DISTANCE = 8.04 ANGSTROMS
REMARK 525 HOH A1355 DISTANCE = 8.41 ANGSTROMS
REMARK 525 HOH A1356 DISTANCE = 8.66 ANGSTROMS
REMARK 525 HOH A1357 DISTANCE = 8.76 ANGSTROMS
REMARK 525 HOH A1358 DISTANCE = 8.86 ANGSTROMS
REMARK 525 HOH A1359 DISTANCE = 9.02 ANGSTROMS
REMARK 525 HOH A1360 DISTANCE = 9.92 ANGSTROMS
REMARK 525 HOH A1361 DISTANCE = 10.48 ANGSTROMS
REMARK 525 HOH A1362 DISTANCE = 10.99 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 MYR A 601
REMARK 610 MYR A 603
REMARK 610 MYR A 604
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OQ5 A 607
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6YAU RELATED DB: PDB
DBREF 6YG9 A 1 585 UNP P02768 ALBU_HUMAN 25 609
SEQRES 1 A 585 ASP ALA HIS LYS SER GLU VAL ALA HIS ARG PHE LYS ASP
SEQRES 2 A 585 LEU GLY GLU GLU ASN PHE LYS ALA LEU VAL LEU ILE ALA
SEQRES 3 A 585 PHE ALA GLN TYR LEU GLN GLN CYS PRO PHE GLU ASP HIS
SEQRES 4 A 585 VAL LYS LEU VAL ASN GLU VAL THR GLU PHE ALA LYS THR
SEQRES 5 A 585 CYS VAL ALA ASP GLU SER ALA GLU ASN CYS ASP LYS SER
SEQRES 6 A 585 LEU HIS THR LEU PHE GLY ASP LYS LEU CYS THR VAL ALA
SEQRES 7 A 585 THR LEU ARG GLU THR TYR GLY GLU MET ALA ASP CYS CYS
SEQRES 8 A 585 ALA LYS GLN GLU PRO GLU ARG ASN GLU CYS PHE LEU GLN
SEQRES 9 A 585 HIS LYS ASP ASP ASN PRO ASN LEU PRO ARG LEU VAL ARG
SEQRES 10 A 585 PRO GLU VAL ASP VAL MET CYS THR ALA PHE HIS ASP ASN
SEQRES 11 A 585 GLU GLU THR PHE LEU LYS LYS TYR LEU TYR GLU ILE ALA
SEQRES 12 A 585 ARG ARG HIS PRO TYR PHE TYR ALA PRO GLU LEU LEU PHE
SEQRES 13 A 585 PHE ALA LYS ARG TYR LYS ALA ALA PHE THR GLU CYS CYS
SEQRES 14 A 585 GLN ALA ALA ASP LYS ALA ALA CYS LEU LEU PRO LYS LEU
SEQRES 15 A 585 ASP GLU LEU ARG ASP GLU GLY LYS ALA SER SER ALA LYS
SEQRES 16 A 585 GLN ARG LEU LYS CYS ALA SER LEU GLN LYS PHE GLY GLU
SEQRES 17 A 585 ARG ALA PHE LYS ALA TRP ALA VAL ALA ARG LEU SER GLN
SEQRES 18 A 585 ARG PHE PRO LYS ALA GLU PHE ALA GLU VAL SER LYS LEU
SEQRES 19 A 585 VAL THR ASP LEU THR LYS VAL HIS THR GLU CYS CYS HIS
SEQRES 20 A 585 GLY ASP LEU LEU GLU CYS ALA ASP ASP ARG ALA ASP LEU
SEQRES 21 A 585 ALA LYS TYR ILE CYS GLU ASN GLN ASP SER ILE SER SER
SEQRES 22 A 585 LYS LEU LYS GLU CYS CYS GLU LYS PRO LEU LEU GLU LYS
SEQRES 23 A 585 SER HIS CYS ILE ALA GLU VAL GLU ASN ASP GLU MET PRO
SEQRES 24 A 585 ALA ASP LEU PRO SER LEU ALA ALA ASP PHE VAL GLU SER
SEQRES 25 A 585 LYS ASP VAL CYS LYS ASN TYR ALA GLU ALA LYS ASP VAL
SEQRES 26 A 585 PHE LEU GLY MET PHE LEU TYR GLU TYR ALA ARG ARG HIS
SEQRES 27 A 585 PRO ASP TYR SER VAL VAL LEU LEU LEU ARG LEU ALA LYS
SEQRES 28 A 585 THR TYR GLU THR THR LEU GLU LYS CYS CYS ALA ALA ALA
SEQRES 29 A 585 ASP PRO HIS GLU CYS TYR ALA LYS VAL PHE ASP GLU PHE
SEQRES 30 A 585 LYS PRO LEU VAL GLU GLU PRO GLN ASN LEU ILE LYS GLN
SEQRES 31 A 585 ASN CYS GLU LEU PHE GLU GLN LEU GLY GLU TYR LYS PHE
SEQRES 32 A 585 GLN ASN ALA LEU LEU VAL ARG TYR THR LYS LYS VAL PRO
SEQRES 33 A 585 GLN VAL SER THR PRO THR LEU VAL GLU VAL SER ARG ASN
SEQRES 34 A 585 LEU GLY LYS VAL GLY SER LYS CYS CYS LYS HIS PRO GLU
SEQRES 35 A 585 ALA LYS ARG MET PRO CYS ALA GLU ASP TYR LEU SER VAL
SEQRES 36 A 585 VAL LEU ASN GLN LEU CYS VAL LEU HIS GLU LYS THR PRO
SEQRES 37 A 585 VAL SER ASP ARG VAL THR LYS CYS CYS THR GLU SER LEU
SEQRES 38 A 585 VAL ASN ARG ARG PRO CYS PHE SER ALA LEU GLU VAL ASP
SEQRES 39 A 585 GLU THR TYR VAL PRO LYS GLU PHE ASN ALA GLU THR PHE
SEQRES 40 A 585 THR PHE HIS ALA ASP ILE CYS THR LEU SER GLU LYS GLU
SEQRES 41 A 585 ARG GLN ILE LYS LYS GLN THR ALA LEU VAL GLU LEU VAL
SEQRES 42 A 585 LYS HIS LYS PRO LYS ALA THR LYS GLU GLN LEU LYS ALA
SEQRES 43 A 585 VAL MET ASP ASP PHE ALA ALA PHE VAL GLU LYS CYS CYS
SEQRES 44 A 585 LYS ALA ASP ASP LYS GLU THR CYS PHE ALA GLU GLU GLY
SEQRES 45 A 585 LYS LYS LEU VAL ALA ALA SER GLN ALA ALA LEU GLY LEU
HET MYR A 601 14
HET MYR A 602 16
HET MYR A 603 12
HET MYR A 604 13
HET MYR A 605 16
HET MYR A 606 16
HET OQ5 A 607 57
HETNAM MYR MYRISTIC ACID
HETNAM OQ5 20-[[(2~{S})-5-[2-[2-[2-[2-[2-[2-(DIETHYLAMINO)-2-
HETNAM 2 OQ5 OXIDANYLIDENE-ETHOXY]ETHOXY]ETHYLAMINO]-2-
HETNAM 3 OQ5 OXIDANYLIDENE-ETHOXY]ETHOXY]ETHYLAMINO]-1-OXIDANYL-1,
HETNAM 4 OQ5 5-BIS(OXIDANYLIDENE)PENTAN-2-YL]AMINO]-20-
HETNAM 5 OQ5 OXIDANYLIDENE-ICOSANOIC ACID
FORMUL 2 MYR 6(C14 H28 O2)
FORMUL 8 OQ5 C41 H76 N4 O12
FORMUL 9 HOH *662(H2 O)
HELIX 1 AA1 SER A 5 GLY A 15 1 11
HELIX 2 AA2 GLY A 15 LEU A 31 1 17
HELIX 3 AA3 PRO A 35 ASP A 56 1 22
HELIX 4 AA4 SER A 65 VAL A 77 1 13
HELIX 5 AA5 THR A 79 GLY A 85 1 7
HELIX 6 AA6 GLU A 86 LYS A 93 5 8
HELIX 7 AA7 PRO A 96 HIS A 105 1 10
HELIX 8 AA8 GLU A 119 ASN A 130 1 12
HELIX 9 AA9 ASN A 130 HIS A 146 1 17
HELIX 10 AB1 TYR A 150 CYS A 169 1 20
HELIX 11 AB2 ASP A 173 PHE A 223 1 51
HELIX 12 AB3 GLU A 227 GLY A 248 1 22
HELIX 13 AB4 ASP A 249 GLU A 266 1 18
HELIX 14 AB5 ASN A 267 ILE A 271 5 5
HELIX 15 AB6 LEU A 275 LYS A 281 1 7
HELIX 16 AB7 PRO A 282 GLU A 292 1 11
HELIX 17 AB8 LEU A 305 VAL A 310 1 6
HELIX 18 AB9 ASP A 314 GLU A 321 1 8
HELIX 19 AC1 ALA A 322 HIS A 338 1 17
HELIX 20 AC2 SER A 342 CYS A 361 1 20
HELIX 21 AC3 PHE A 377 GLU A 396 1 20
HELIX 22 AC4 LEU A 398 VAL A 415 1 18
HELIX 23 AC5 SER A 419 CYS A 438 1 20
HELIX 24 AC6 LYS A 444 THR A 467 1 24
HELIX 25 AC7 SER A 470 GLU A 479 1 10
HELIX 26 AC8 ASN A 483 ALA A 490 1 8
HELIX 27 AC9 ASN A 503 PHE A 507 5 5
HELIX 28 AD1 HIS A 510 THR A 515 5 6
HELIX 29 AD2 SER A 517 LYS A 536 1 20
HELIX 30 AD3 GLU A 571 SER A 579 1 9
SSBOND 1 CYS A 53 CYS A 62 1555 1555 2.03
SSBOND 2 CYS A 75 CYS A 91 1555 1555 2.04
SSBOND 3 CYS A 90 CYS A 101 1555 1555 2.05
SSBOND 4 CYS A 124 CYS A 169 1555 1555 2.04
SSBOND 5 CYS A 168 CYS A 177 1555 1555 2.04
SSBOND 6 CYS A 200 CYS A 246 1555 1555 2.03
SSBOND 7 CYS A 245 CYS A 253 1555 1555 2.01
SSBOND 8 CYS A 265 CYS A 279 1555 1555 2.04
SSBOND 9 CYS A 278 CYS A 289 1555 1555 2.02
SSBOND 10 CYS A 316 CYS A 361 1555 1555 2.03
SSBOND 11 CYS A 360 CYS A 369 1555 1555 2.04
SSBOND 12 CYS A 392 CYS A 438 1555 1555 2.04
SSBOND 13 CYS A 437 CYS A 448 1555 1555 2.04
SSBOND 14 CYS A 461 CYS A 477 1555 1555 2.02
SSBOND 15 CYS A 476 CYS A 487 1555 1555 2.05
CISPEP 1 GLU A 95 PRO A 96 0 5.81
CISPEP 2 ASN A 109 PRO A 110 0 -10.15
SITE 1 AC1 9 ARG A 117 MET A 123 TYR A 138 ILE A 142
SITE 2 AC1 9 ALA A 158 TYR A 161 PHE A 165 ARG A 186
SITE 3 AC1 9 HOH A 716
SITE 1 AC2 9 TYR A 401 ASN A 405 PHE A 507 PHE A 509
SITE 2 AC2 9 LYS A 525 LEU A 532 LYS A 545 HOH A 830
SITE 3 AC2 9 HOH A 871
SITE 1 AC3 7 LEU A 238 ARG A 257 ILE A 264 SER A 287
SITE 2 AC3 7 ILE A 290 HOH A 756 HOH A 885
SITE 1 AC4 10 SER A 342 VAL A 344 ARG A 348 LEU A 387
SITE 2 AC4 10 LEU A 430 MET A 446 LEU A 453 ARG A 485
SITE 3 AC4 10 MYR A 605 HOH A 800
SITE 1 AC5 11 LEU A 387 TYR A 411 VAL A 418 VAL A 426
SITE 2 AC5 11 LEU A 453 LEU A 460 VAL A 473 PHE A 488
SITE 3 AC5 11 SER A 489 MYR A 604 HOH A 850
SITE 1 AC6 8 ALA A 210 ALA A 213 ASP A 324 LEU A 327
SITE 2 AC6 8 GLY A 328 ALA A 350 GLU A 354 HOH A 722
SITE 1 AC7 16 ARG A 10 VAL A 23 VAL A 46 PHE A 49
SITE 2 AC7 16 ASN A 61 LEU A 69 TYR A 150 ALA A 254
SITE 3 AC7 16 ARG A 257 ALA A 258 LEU A 283 SER A 287
SITE 4 AC7 16 HOH A 742 HOH A 747 HOH A 875 HOH A 889
CRYST1 197.722 38.141 95.372 90.00 105.88 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005058 0.000000 0.001439 0.00000
SCALE2 0.000000 0.026219 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010901 0.00000