HEADER HYDROLASE 27-MAR-20 6YGF TITLE NADASE FROM ASPERGILLUS FUMIGATUS WITH TRAPPED REACTION PRODUCTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFNADASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS AF293; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 GENE: AFUA_6G14470; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NAD+ GLYCOHYDROLASE, NAD, CA-BINDING, HOMODIMER, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, NICOTINAMIDE, ADENOSINE DIPHOSPHATE RIBOSE EXPDTA X-RAY DIFFRACTION AUTHOR O.STROMLAND,M.ZIEGLER,J.P.KALLIO REVDAT 3 01-MAY-24 6YGF 1 REMARK REVDAT 2 07-JUL-21 6YGF 1 JRNL REVDAT 1 23-DEC-20 6YGF 0 JRNL AUTH O.STROMLAND,J.P.KALLIO,A.PSCHIBUL,R.H.SKOGE, JRNL AUTH 2 H.M.HARDARDOTTIR,L.J.SVERKELI,T.HEINEKAMP,O.KNIEMEYER, JRNL AUTH 3 M.MIGAUD,M.V.MAKAROV,T.I.GOSSMANN,A.A.BRAKHAGE,M.ZIEGLER JRNL TITL DISCOVERY OF FUNGAL SURFACE NADASES PREDOMINANTLY PRESENT IN JRNL TITL 2 PATHOGENIC SPECIES. JRNL REF NAT COMMUN V. 12 1631 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33712585 JRNL DOI 10.1038/S41467-021-21307-Z REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9500 - 4.9000 0.99 2979 142 0.1768 0.2103 REMARK 3 2 4.9000 - 3.8900 1.00 2851 125 0.1293 0.1578 REMARK 3 3 3.8900 - 3.4000 1.00 2746 168 0.1471 0.1612 REMARK 3 4 3.4000 - 3.0900 1.00 2708 165 0.1515 0.1797 REMARK 3 5 3.0900 - 2.8700 1.00 2745 141 0.1610 0.1785 REMARK 3 6 2.8700 - 2.7000 1.00 2719 146 0.1629 0.1995 REMARK 3 7 2.7000 - 2.5600 1.00 2707 127 0.1561 0.1912 REMARK 3 8 2.5600 - 2.4500 1.00 2672 168 0.1660 0.1975 REMARK 3 9 2.4500 - 2.3600 1.00 2701 151 0.1628 0.2237 REMARK 3 10 2.3600 - 2.2800 1.00 2690 154 0.1693 0.2194 REMARK 3 11 2.2800 - 2.2000 1.00 2687 130 0.1661 0.2334 REMARK 3 12 2.2000 - 2.1400 1.00 2716 133 0.1725 0.2223 REMARK 3 13 2.1400 - 2.0900 1.00 2685 123 0.1825 0.2210 REMARK 3 14 2.0900 - 2.0300 1.00 2710 137 0.1929 0.2332 REMARK 3 15 2.0300 - 1.9900 1.00 2627 146 0.2070 0.2654 REMARK 3 16 1.9900 - 1.9500 1.00 2702 153 0.1990 0.2139 REMARK 3 17 1.9500 - 1.9100 1.00 2645 150 0.1953 0.2277 REMARK 3 18 1.9100 - 1.8700 1.00 2651 139 0.2111 0.2419 REMARK 3 19 1.8700 - 1.8400 1.00 2724 107 0.2277 0.2895 REMARK 3 20 1.8400 - 1.8100 1.00 2644 160 0.2392 0.2793 REMARK 3 21 1.8100 - 1.7800 1.00 2678 119 0.2543 0.2576 REMARK 3 22 1.7800 - 1.7500 1.00 2677 139 0.2919 0.2926 REMARK 3 23 1.7500 - 1.7200 0.99 2575 125 0.3395 0.3581 REMARK 3 24 1.7200 - 1.7000 0.96 2604 139 0.3868 0.4040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.826 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3725 REMARK 3 ANGLE : 0.881 5116 REMARK 3 CHIRALITY : 0.055 574 REMARK 3 PLANARITY : 0.007 653 REMARK 3 DIHEDRAL : 17.951 1392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 26 THROUGH 234) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7326 30.1695 29.4939 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1759 REMARK 3 T33: 0.2044 T12: -0.0381 REMARK 3 T13: -0.0084 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.2201 L22: 1.0945 REMARK 3 L33: 2.7411 L12: 0.2587 REMARK 3 L13: -0.6031 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.1214 S13: 0.2015 REMARK 3 S21: -0.0244 S22: 0.0975 S23: -0.0148 REMARK 3 S31: -0.2009 S32: 0.1455 S33: -0.1588 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 25 THROUGH 233) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1882 18.8094 11.6846 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.1935 REMARK 3 T33: 0.2365 T12: -0.0942 REMARK 3 T13: -0.0443 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.7758 L22: 1.2119 REMARK 3 L33: 2.1925 L12: 0.3755 REMARK 3 L13: 0.0256 L23: -0.4857 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.1095 S13: 0.0023 REMARK 3 S21: -0.3269 S22: 0.2413 S23: 0.2039 REMARK 3 S31: 0.2202 S32: -0.2588 S33: -0.1659 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292105844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 85.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02465 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: D_1292105770 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 16% PEG 8000 AND 20% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 171.81533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.90767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.90767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 171.81533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 ALA B 16 REMARK 465 THR B 17 REMARK 465 VAL B 18 REMARK 465 LEU B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 GLN B 22 REMARK 465 HIS B 23 REMARK 465 THR B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 235 REMARK 465 VAL B 236 REMARK 465 LEU B 237 REMARK 465 PHE B 238 REMARK 465 GLN B 239 REMARK 465 GLY B 240 REMARK 465 PRO B 241 REMARK 465 GLY B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 GLN A 22 REMARK 465 HIS A 23 REMARK 465 THR A 24 REMARK 465 GLN A 234 REMARK 465 ASP A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 PHE A 238 REMARK 465 GLN A 239 REMARK 465 GLY A 240 REMARK 465 PRO A 241 REMARK 465 GLY A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 602 O HOH A 707 2.07 REMARK 500 O HOH B 695 O HOH B 701 2.07 REMARK 500 O HOH B 602 O HOH B 721 2.13 REMARK 500 O HOH A 509 O HOH A 645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 50 17.24 58.50 REMARK 500 TYR B 218 34.99 -144.25 REMARK 500 CYS A 50 14.65 59.27 REMARK 500 TYR A 218 30.62 -146.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 782 DISTANCE = 7.05 ANGSTROMS DBREF 6YGF B 1 234 UNP Q4WL81 Q4WL81_ASPFU 1 234 DBREF 6YGF A 1 234 UNP Q4WL81 Q4WL81_ASPFU 1 234 SEQADV 6YGF ASP B 235 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF VAL B 236 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF LEU B 237 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF PHE B 238 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLN B 239 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLY B 240 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF PRO B 241 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLY B 242 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 243 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 244 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 245 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 246 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 247 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS B 248 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF ASP A 235 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF VAL A 236 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF LEU A 237 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF PHE A 238 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLN A 239 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLY A 240 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF PRO A 241 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF GLY A 242 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 243 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 244 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 245 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 246 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 247 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGF HIS A 248 UNP Q4WL81 EXPRESSION TAG SEQRES 1 B 248 MET ILE PHE THR ASN ALA ILE LEU VAL ILE SER ALA LEU SEQRES 2 B 248 LEU PRO ALA THR VAL LEU SER LEU GLN HIS THR GLU ASP SEQRES 3 B 248 SER LEU PHE PRO ALA ARG CYS TRP PRO ASP PRO CYS ALA SEQRES 4 B 248 GLY ILE THR PHE GLN ASN ASP THR TYR VAL CYS GLY ASP SEQRES 5 B 248 PRO ARG LEU GLY PRO VAL VAL LEU PRO GLN LYS PHE PRO SEQRES 6 B 248 LEU ASN ASN GLU LEU ARG THR TYR ALA ARG PHE GLY ALA SEQRES 7 B 248 LEU CYS PRO ALA GLU PHE LEU ASP LYS TRP ALA THR ASP SEQRES 8 B 248 VAL ALA PRO ASN GLY THR TYR ILE TYR PRO PRO ALA ASN SEQRES 9 B 248 GLY PHE ALA LEU ASP THR GLU GLU GLN PRO ILE LEU GLY SEQRES 10 B 248 ASN ALA THR LEU PRO VAL GLY MET LYS LEU ASP ARG PHE SEQRES 11 B 248 GLY SER GLU TYR GLY THR PHE LEU ALA PRO LEU GLY ALA SEQRES 12 B 248 PRO TYR ILE GLU ARG SER LEU PRO PRO SER ASN LEU ASN SEQRES 13 B 248 THR PHE ASP GLY MET TYR PRO TYR ASN TYR HIS VAL TYR SEQRES 14 B 248 GLN VAL THR LYS GLU PHE VAL VAL GLY LEU GLY PRO ILE SEQRES 15 B 248 ALA PRO TRP PHE GLU GLN PRO GLY MET GLY THR GLN PHE SEQRES 16 B 248 VAL THR TYR THR ASN VAL LEU GLY LEU ILE ASP ASP GLY SEQRES 17 B 248 TYR LEU ARG ARG LEU ASP GLU SER GLU TYR ASP GLU LYS SEQRES 18 B 248 VAL GLU TYR SER ASN PRO TYR THR PRO GLY PRO ASN GLN SEQRES 19 B 248 ASP VAL LEU PHE GLN GLY PRO GLY HIS HIS HIS HIS HIS SEQRES 20 B 248 HIS SEQRES 1 A 248 MET ILE PHE THR ASN ALA ILE LEU VAL ILE SER ALA LEU SEQRES 2 A 248 LEU PRO ALA THR VAL LEU SER LEU GLN HIS THR GLU ASP SEQRES 3 A 248 SER LEU PHE PRO ALA ARG CYS TRP PRO ASP PRO CYS ALA SEQRES 4 A 248 GLY ILE THR PHE GLN ASN ASP THR TYR VAL CYS GLY ASP SEQRES 5 A 248 PRO ARG LEU GLY PRO VAL VAL LEU PRO GLN LYS PHE PRO SEQRES 6 A 248 LEU ASN ASN GLU LEU ARG THR TYR ALA ARG PHE GLY ALA SEQRES 7 A 248 LEU CYS PRO ALA GLU PHE LEU ASP LYS TRP ALA THR ASP SEQRES 8 A 248 VAL ALA PRO ASN GLY THR TYR ILE TYR PRO PRO ALA ASN SEQRES 9 A 248 GLY PHE ALA LEU ASP THR GLU GLU GLN PRO ILE LEU GLY SEQRES 10 A 248 ASN ALA THR LEU PRO VAL GLY MET LYS LEU ASP ARG PHE SEQRES 11 A 248 GLY SER GLU TYR GLY THR PHE LEU ALA PRO LEU GLY ALA SEQRES 12 A 248 PRO TYR ILE GLU ARG SER LEU PRO PRO SER ASN LEU ASN SEQRES 13 A 248 THR PHE ASP GLY MET TYR PRO TYR ASN TYR HIS VAL TYR SEQRES 14 A 248 GLN VAL THR LYS GLU PHE VAL VAL GLY LEU GLY PRO ILE SEQRES 15 A 248 ALA PRO TRP PHE GLU GLN PRO GLY MET GLY THR GLN PHE SEQRES 16 A 248 VAL THR TYR THR ASN VAL LEU GLY LEU ILE ASP ASP GLY SEQRES 17 A 248 TYR LEU ARG ARG LEU ASP GLU SER GLU TYR ASP GLU LYS SEQRES 18 A 248 VAL GLU TYR SER ASN PRO TYR THR PRO GLY PRO ASN GLN SEQRES 19 A 248 ASP VAL LEU PHE GLN GLY PRO GLY HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET FUC D 6 10 HET NAG E 1 14 HET FUC E 2 10 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG B 409 14 HET GOL B 410 6 HET GOL B 411 6 HET PO4 B 412 5 HET NAG A 406 14 HET NCA A 407 9 HET AR6 A 408 36 HET GOL A 409 6 HET PO4 A 410 5 HET PO4 A 411 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM NCA NICOTINAMIDE HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 10 PO4 3(O4 P 3-) FORMUL 12 NCA C6 H6 N2 O FORMUL 13 AR6 C15 H23 N5 O14 P2 FORMUL 17 HOH *559(H2 O) HELIX 1 AA1 PRO B 30 TRP B 34 5 5 HELIX 2 AA2 TYR B 48 GLY B 56 5 9 HELIX 3 AA3 PRO B 65 ARG B 71 1 7 HELIX 4 AA4 CYS B 80 ALA B 89 1 10 HELIX 5 AA5 PRO B 102 PHE B 106 5 5 HELIX 6 AA6 PRO B 144 ARG B 148 5 5 HELIX 7 AA7 PRO B 151 ASN B 156 5 6 HELIX 8 AA8 TYR B 162 TYR B 164 5 3 HELIX 9 AA9 ASN B 200 ASP B 207 1 8 HELIX 10 AB1 ASP B 214 TYR B 218 5 5 HELIX 11 AB2 GLU B 220 SER B 225 5 6 HELIX 12 AB3 PRO A 30 TRP A 34 5 5 HELIX 13 AB4 TYR A 48 GLY A 56 5 9 HELIX 14 AB5 PRO A 65 LEU A 70 1 6 HELIX 15 AB6 CYS A 80 ALA A 89 1 10 HELIX 16 AB7 PRO A 102 PHE A 106 5 5 HELIX 17 AB8 PRO A 144 SER A 149 5 6 HELIX 18 AB9 PRO A 151 ASN A 156 5 6 HELIX 19 AC1 TYR A 162 TYR A 164 5 3 HELIX 20 AC2 ASN A 200 ASP A 207 1 8 HELIX 21 AC3 ASP A 214 TYR A 218 5 5 HELIX 22 AC4 GLU A 220 SER A 225 5 6 SHEET 1 AA1 7 GLY B 117 LEU B 121 0 SHEET 2 AA1 7 PHE B 175 PRO B 181 -1 O PHE B 175 N LEU B 121 SHEET 3 AA1 7 THR B 193 VAL B 196 -1 O VAL B 196 N GLY B 178 SHEET 4 AA1 7 PHE B 137 PRO B 140 -1 N LEU B 138 O PHE B 195 SHEET 5 AA1 7 LYS B 126 PHE B 130 -1 N ASP B 128 O ALA B 139 SHEET 6 AA1 7 TYR B 166 VAL B 171 -1 O TYR B 169 N LEU B 127 SHEET 7 AA1 7 LEU B 210 ARG B 212 -1 O ARG B 211 N GLN B 170 SHEET 1 AA2 7 GLY A 117 LEU A 121 0 SHEET 2 AA2 7 PHE A 175 PRO A 181 -1 O PHE A 175 N LEU A 121 SHEET 3 AA2 7 THR A 193 VAL A 196 -1 O VAL A 196 N GLY A 178 SHEET 4 AA2 7 PHE A 137 PRO A 140 -1 N LEU A 138 O PHE A 195 SHEET 5 AA2 7 LYS A 126 PHE A 130 -1 N ASP A 128 O ALA A 139 SHEET 6 AA2 7 TYR A 166 VAL A 171 -1 O TYR A 169 N LEU A 127 SHEET 7 AA2 7 LEU A 210 ARG A 212 -1 O ARG A 211 N GLN A 170 SSBOND 1 CYS B 33 CYS B 80 1555 1555 2.03 SSBOND 2 CYS B 38 CYS B 50 1555 1555 2.04 SSBOND 3 CYS A 33 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 38 CYS A 50 1555 1555 2.03 LINK ND2 ASN B 45 C1 NAG B 409 1555 1555 1.44 LINK ND2 ASN B 95 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 118 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 45 C1 NAG A 406 1555 1555 1.44 LINK ND2 ASN A 95 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 118 C1 NAG F 1 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 6 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.43 CISPEP 1 TRP B 34 PRO B 35 0 -2.49 CISPEP 2 PHE B 64 PRO B 65 0 4.34 CISPEP 3 TRP A 34 PRO A 35 0 9.88 CISPEP 4 PHE A 64 PRO A 65 0 6.56 CRYST1 63.815 63.815 257.723 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015670 0.009047 0.000000 0.00000 SCALE2 0.000000 0.018095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003880 0.00000