HEADER HYDROLASE 27-MAR-20 6YGG TITLE NADASE FROM ASPERGILLUS FUMIGATUS COMPLEXED WITH A SUBSTRATE ANOLOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFNADASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS AF293; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 GENE: AFUA_6G14470; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NAD+ GLYCOHYDROLASE, NAD, CA-BINDING, HOMODIMER, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, BENZAMIDE ADENINE DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR O.STROMLAND,M.ZIEGLER,J.P.KALLIO REVDAT 4 23-OCT-24 6YGG 1 REMARK REVDAT 3 01-MAY-24 6YGG 1 REMARK REVDAT 2 07-JUL-21 6YGG 1 JRNL REVDAT 1 23-DEC-20 6YGG 0 JRNL AUTH O.STROMLAND,J.P.KALLIO,A.PSCHIBUL,R.H.SKOGE, JRNL AUTH 2 H.M.HARDARDOTTIR,L.J.SVERKELI,T.HEINEKAMP,O.KNIEMEYER, JRNL AUTH 3 M.MIGAUD,M.V.MAKAROV,T.I.GOSSMANN,A.A.BRAKHAGE,M.ZIEGLER JRNL TITL DISCOVERY OF FUNGAL SURFACE NADASES PREDOMINANTLY PRESENT IN JRNL TITL 2 PATHOGENIC SPECIES. JRNL REF NAT COMMUN V. 12 1631 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33712585 JRNL DOI 10.1038/S41467-021-21307-Z REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 45508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6600 - 4.7600 0.99 2776 144 0.1831 0.1926 REMARK 3 2 4.7500 - 3.7800 1.00 2619 151 0.1353 0.1456 REMARK 3 3 3.7700 - 3.3000 0.99 2597 148 0.1598 0.2210 REMARK 3 4 3.3000 - 3.0000 0.99 2584 129 0.1705 0.2249 REMARK 3 5 3.0000 - 2.7800 0.99 2556 155 0.1774 0.2271 REMARK 3 6 2.7800 - 2.6200 0.99 2556 124 0.1763 0.2328 REMARK 3 7 2.6200 - 2.4900 0.99 2541 114 0.1772 0.2343 REMARK 3 8 2.4900 - 2.3800 0.98 2541 129 0.1799 0.2784 REMARK 3 9 2.3800 - 2.2900 0.98 2503 139 0.1902 0.2371 REMARK 3 10 2.2900 - 2.2100 0.99 2529 125 0.1964 0.2315 REMARK 3 11 2.2100 - 2.1400 0.98 2509 129 0.2048 0.2792 REMARK 3 12 2.1400 - 2.0800 0.98 2492 155 0.2200 0.2854 REMARK 3 13 2.0800 - 2.0200 0.98 2469 144 0.2391 0.2545 REMARK 3 14 2.0200 - 1.9700 0.98 2461 151 0.2613 0.3401 REMARK 3 15 1.9700 - 1.9300 0.98 2507 129 0.2884 0.3360 REMARK 3 16 1.9300 - 1.8900 0.98 2477 115 0.3310 0.3456 REMARK 3 17 1.8900 - 1.8500 0.97 2478 132 0.3746 0.3877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3654 REMARK 3 ANGLE : 1.001 5019 REMARK 3 CHIRALITY : 0.068 567 REMARK 3 PLANARITY : 0.007 643 REMARK 3 DIHEDRAL : 18.108 1351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 26 THROUGH 234) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0600 -2.6175 -28.7408 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1366 REMARK 3 T33: 0.1423 T12: -0.0021 REMARK 3 T13: -0.0276 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0754 L22: 0.5593 REMARK 3 L33: 0.2567 L12: -0.0140 REMARK 3 L13: 0.1553 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0083 S13: -0.0288 REMARK 3 S21: -0.0695 S22: 0.0478 S23: 0.0772 REMARK 3 S31: 0.0891 S32: 0.0181 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 27 THROUGH 235) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3138 11.7792 -11.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1427 REMARK 3 T33: 0.1336 T12: 0.0198 REMARK 3 T13: -0.0057 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0840 L22: 0.5008 REMARK 3 L33: 0.2880 L12: 0.0385 REMARK 3 L13: -0.0874 L23: 0.1993 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.0041 S13: 0.0226 REMARK 3 S21: 0.0856 S22: 0.0454 S23: 0.0401 REMARK 3 S31: -0.0029 S32: -0.0014 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292105845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91589 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.14260 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: D_1292105770 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.3 M CACL2 AND REMARK 280 20-25% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.50350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.15900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.50350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.15900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 GLN A 22 REMARK 465 HIS A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 PHE A 238 REMARK 465 GLN A 239 REMARK 465 GLY A 240 REMARK 465 PRO A 241 REMARK 465 GLY A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 ALA B 16 REMARK 465 THR B 17 REMARK 465 VAL B 18 REMARK 465 LEU B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 GLN B 22 REMARK 465 HIS B 23 REMARK 465 THR B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 26 REMARK 465 VAL B 236 REMARK 465 LEU B 237 REMARK 465 PHE B 238 REMARK 465 GLN B 239 REMARK 465 GLY B 240 REMARK 465 PRO B 241 REMARK 465 GLY B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 677 O HOH B 791 2.10 REMARK 500 O HOH A 525 O HOH A 624 2.14 REMARK 500 O HOH B 776 O HOH B 798 2.15 REMARK 500 O HOH A 544 O HOH A 566 2.16 REMARK 500 O HOH A 586 O HOH A 623 2.17 REMARK 500 O HOH A 409 O HOH A 611 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 27 168.46 112.04 REMARK 500 CYS A 50 17.97 56.25 REMARK 500 TYR A 218 40.77 -144.87 REMARK 500 GLN B 44 -47.19 -131.27 REMARK 500 THR B 47 -7.52 79.20 REMARK 500 TYR B 218 38.96 -143.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 818 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 32 O REMARK 620 2 TRP A 34 O 88.9 REMARK 620 3 TYR A 134 O 25.2 74.3 REMARK 620 4 HOH A 489 O 79.9 77.7 96.8 REMARK 620 5 HOH A 557 O 158.9 92.4 166.7 79.7 REMARK 620 6 HOH A 558 O 81.0 166.8 99.0 92.0 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 216 O REMARK 620 2 ASP A 219 OD1 83.8 REMARK 620 3 GLU A 220 OE2 174.0 100.1 REMARK 620 4 GLU A 223 OE1 93.6 70.9 92.0 REMARK 620 5 GLU A 223 OE2 93.5 122.7 88.3 52.1 REMARK 620 6 HOH A 514 O 82.9 77.0 93.5 147.8 159.7 REMARK 620 7 HOH A 534 O 94.5 147.8 79.8 141.2 89.5 71.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 216 O REMARK 620 2 ASP B 219 OD1 78.6 REMARK 620 3 GLU B 220 OE1 172.3 95.8 REMARK 620 4 GLU B 223 OE1 91.6 69.3 91.4 REMARK 620 5 GLU B 223 OE2 95.5 121.1 92.0 52.2 REMARK 620 6 HOH B 654 O 85.1 78.3 88.6 147.5 160.3 REMARK 620 7 HOH B 759 O 92.8 153.2 89.9 136.9 84.8 75.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YGE RELATED DB: PDB DBREF 6YGG A 1 234 UNP Q4WL81 Q4WL81_ASPFU 1 234 DBREF 6YGG B 1 234 UNP Q4WL81 Q4WL81_ASPFU 1 234 SEQADV 6YGG ASP A 235 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG VAL A 236 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG LEU A 237 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG PHE A 238 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLN A 239 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLY A 240 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG PRO A 241 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLY A 242 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 243 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 244 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 245 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 246 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 247 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS A 248 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG ASP B 235 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG VAL B 236 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG LEU B 237 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG PHE B 238 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLN B 239 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLY B 240 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG PRO B 241 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG GLY B 242 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 243 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 244 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 245 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 246 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 247 UNP Q4WL81 EXPRESSION TAG SEQADV 6YGG HIS B 248 UNP Q4WL81 EXPRESSION TAG SEQRES 1 A 248 MET ILE PHE THR ASN ALA ILE LEU VAL ILE SER ALA LEU SEQRES 2 A 248 LEU PRO ALA THR VAL LEU SER LEU GLN HIS THR GLU ASP SEQRES 3 A 248 SER LEU PHE PRO ALA ARG CYS TRP PRO ASP PRO CYS ALA SEQRES 4 A 248 GLY ILE THR PHE GLN ASN ASP THR TYR VAL CYS GLY ASP SEQRES 5 A 248 PRO ARG LEU GLY PRO VAL VAL LEU PRO GLN LYS PHE PRO SEQRES 6 A 248 LEU ASN ASN GLU LEU ARG THR TYR ALA ARG PHE GLY ALA SEQRES 7 A 248 LEU CYS PRO ALA GLU PHE LEU ASP LYS TRP ALA THR ASP SEQRES 8 A 248 VAL ALA PRO ASN GLY THR TYR ILE TYR PRO PRO ALA ASN SEQRES 9 A 248 GLY PHE ALA LEU ASP THR GLU GLU GLN PRO ILE LEU GLY SEQRES 10 A 248 ASN ALA THR LEU PRO VAL GLY MET LYS LEU ASP ARG PHE SEQRES 11 A 248 GLY SER GLU TYR GLY THR PHE LEU ALA PRO LEU GLY ALA SEQRES 12 A 248 PRO TYR ILE GLU ARG SER LEU PRO PRO SER ASN LEU ASN SEQRES 13 A 248 THR PHE ASP GLY MET TYR PRO TYR ASN TYR HIS VAL TYR SEQRES 14 A 248 GLN VAL THR LYS GLU PHE VAL VAL GLY LEU GLY PRO ILE SEQRES 15 A 248 ALA PRO TRP PHE GLU GLN PRO GLY MET GLY THR GLN PHE SEQRES 16 A 248 VAL THR TYR THR ASN VAL LEU GLY LEU ILE ASP ASP GLY SEQRES 17 A 248 TYR LEU ARG ARG LEU ASP GLU SER GLU TYR ASP GLU LYS SEQRES 18 A 248 VAL GLU TYR SER ASN PRO TYR THR PRO GLY PRO ASN GLN SEQRES 19 A 248 ASP VAL LEU PHE GLN GLY PRO GLY HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS SEQRES 1 B 248 MET ILE PHE THR ASN ALA ILE LEU VAL ILE SER ALA LEU SEQRES 2 B 248 LEU PRO ALA THR VAL LEU SER LEU GLN HIS THR GLU ASP SEQRES 3 B 248 SER LEU PHE PRO ALA ARG CYS TRP PRO ASP PRO CYS ALA SEQRES 4 B 248 GLY ILE THR PHE GLN ASN ASP THR TYR VAL CYS GLY ASP SEQRES 5 B 248 PRO ARG LEU GLY PRO VAL VAL LEU PRO GLN LYS PHE PRO SEQRES 6 B 248 LEU ASN ASN GLU LEU ARG THR TYR ALA ARG PHE GLY ALA SEQRES 7 B 248 LEU CYS PRO ALA GLU PHE LEU ASP LYS TRP ALA THR ASP SEQRES 8 B 248 VAL ALA PRO ASN GLY THR TYR ILE TYR PRO PRO ALA ASN SEQRES 9 B 248 GLY PHE ALA LEU ASP THR GLU GLU GLN PRO ILE LEU GLY SEQRES 10 B 248 ASN ALA THR LEU PRO VAL GLY MET LYS LEU ASP ARG PHE SEQRES 11 B 248 GLY SER GLU TYR GLY THR PHE LEU ALA PRO LEU GLY ALA SEQRES 12 B 248 PRO TYR ILE GLU ARG SER LEU PRO PRO SER ASN LEU ASN SEQRES 13 B 248 THR PHE ASP GLY MET TYR PRO TYR ASN TYR HIS VAL TYR SEQRES 14 B 248 GLN VAL THR LYS GLU PHE VAL VAL GLY LEU GLY PRO ILE SEQRES 15 B 248 ALA PRO TRP PHE GLU GLN PRO GLY MET GLY THR GLN PHE SEQRES 16 B 248 VAL THR TYR THR ASN VAL LEU GLY LEU ILE ASP ASP GLY SEQRES 17 B 248 TYR LEU ARG ARG LEU ASP GLU SER GLU TYR ASP GLU LYS SEQRES 18 B 248 VAL GLU TYR SER ASN PRO TYR THR PRO GLY PRO ASN GLN SEQRES 19 B 248 ASP VAL LEU PHE GLN GLY PRO GLY HIS HIS HIS HIS HIS SEQRES 20 B 248 HIS HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG A 306 14 HET CA A 307 1 HET NA A 308 1 HET DQV B 510 44 HET CA B 511 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM DQV [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 DQV DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5S)-5- HETNAM 3 DQV (3-CARBAMOYLPHENYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2- HETNAM 4 DQV YL]METHYL DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 FUC 5(C6 H12 O5) FORMUL 9 CA 2(CA 2+) FORMUL 10 NA NA 1+ FORMUL 11 DQV C22 H28 N6 O14 P2 FORMUL 13 HOH *458(H2 O) HELIX 1 AA1 PRO A 30 TRP A 34 5 5 HELIX 2 AA2 TYR A 48 GLY A 56 5 9 HELIX 3 AA3 PRO A 65 LEU A 70 1 6 HELIX 4 AA4 CYS A 80 ALA A 89 1 10 HELIX 5 AA5 PRO A 102 PHE A 106 5 5 HELIX 6 AA6 PRO A 144 SER A 149 5 6 HELIX 7 AA7 PRO A 151 ASN A 156 5 6 HELIX 8 AA8 TYR A 162 TYR A 164 5 3 HELIX 9 AA9 ASN A 200 ASP A 207 1 8 HELIX 10 AB1 ASP A 214 TYR A 218 5 5 HELIX 11 AB2 GLU A 220 SER A 225 5 6 HELIX 12 AB3 PRO B 30 TRP B 34 5 5 HELIX 13 AB4 TYR B 48 GLY B 56 5 9 HELIX 14 AB5 PRO B 65 LEU B 70 1 6 HELIX 15 AB6 CYS B 80 ALA B 89 1 10 HELIX 16 AB7 PRO B 102 PHE B 106 5 5 HELIX 17 AB8 PRO B 144 SER B 149 5 6 HELIX 18 AB9 PRO B 151 ASN B 156 5 6 HELIX 19 AC1 TYR B 162 TYR B 164 5 3 HELIX 20 AC2 ASN B 200 ASP B 207 1 8 HELIX 21 AC3 ASP B 214 TYR B 218 5 5 HELIX 22 AC4 GLU B 220 SER B 225 5 6 SHEET 1 AA1 7 GLY A 117 LEU A 121 0 SHEET 2 AA1 7 PHE A 175 PRO A 181 -1 O PHE A 175 N LEU A 121 SHEET 3 AA1 7 THR A 193 VAL A 196 -1 O VAL A 196 N GLY A 178 SHEET 4 AA1 7 PHE A 137 PRO A 140 -1 N LEU A 138 O PHE A 195 SHEET 5 AA1 7 LYS A 126 PHE A 130 -1 N ASP A 128 O ALA A 139 SHEET 6 AA1 7 TYR A 166 VAL A 171 -1 O TYR A 169 N LEU A 127 SHEET 7 AA1 7 LEU A 210 ARG A 212 -1 O ARG A 211 N GLN A 170 SHEET 1 AA2 7 GLY B 117 LEU B 121 0 SHEET 2 AA2 7 PHE B 175 PRO B 181 -1 O LEU B 179 N GLY B 117 SHEET 3 AA2 7 THR B 193 VAL B 196 -1 O VAL B 196 N GLY B 178 SHEET 4 AA2 7 PHE B 137 PRO B 140 -1 N LEU B 138 O PHE B 195 SHEET 5 AA2 7 LYS B 126 PHE B 130 -1 N ASP B 128 O ALA B 139 SHEET 6 AA2 7 TYR B 166 VAL B 171 -1 O TYR B 169 N LEU B 127 SHEET 7 AA2 7 LEU B 210 ARG B 212 -1 O ARG B 211 N GLN B 170 SSBOND 1 CYS A 33 CYS A 80 1555 1555 2.02 SSBOND 2 CYS A 38 CYS A 50 1555 1555 2.05 SSBOND 3 CYS B 33 CYS B 80 1555 1555 2.03 SSBOND 4 CYS B 38 CYS B 50 1555 1555 2.03 LINK ND2 ASN A 45 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 95 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG A 306 1555 1555 1.44 LINK ND2 ASN B 45 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 95 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 118 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.46 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.47 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.43 LINK O ARG A 32 NA NA A 308 1555 1555 2.50 LINK O TRP A 34 NA NA A 308 1555 1555 2.30 LINK O TYR A 134 NA NA A 308 1555 3444 2.31 LINK O SER A 216 CA CA A 307 1555 1555 2.22 LINK OD1 ASP A 219 CA CA A 307 1555 1555 2.40 LINK OE2 GLU A 220 CA CA A 307 1555 1555 2.43 LINK OE1 GLU A 223 CA CA A 307 1555 1555 2.68 LINK OE2 GLU A 223 CA CA A 307 1555 1555 2.25 LINK CA CA A 307 O HOH A 514 1555 1555 2.38 LINK CA CA A 307 O HOH A 534 1555 1555 2.28 LINK NA NA A 308 O HOH A 489 1555 1555 2.70 LINK NA NA A 308 O HOH A 557 1555 3454 2.43 LINK NA NA A 308 O HOH A 558 1555 1555 2.45 LINK O SER B 216 CA CA B 511 1555 1555 2.29 LINK OD1 ASP B 219 CA CA B 511 1555 1555 2.33 LINK OE1 GLU B 220 CA CA B 511 1555 1555 2.43 LINK OE1 GLU B 223 CA CA B 511 1555 1555 2.64 LINK OE2 GLU B 223 CA CA B 511 1555 1555 2.34 LINK CA CA B 511 O HOH B 654 1555 1555 2.45 LINK CA CA B 511 O HOH B 759 1555 1555 2.47 CISPEP 1 TRP A 34 PRO A 35 0 8.88 CISPEP 2 PHE A 64 PRO A 65 0 2.04 CISPEP 3 TRP B 34 PRO B 35 0 16.35 CISPEP 4 PHE B 64 PRO B 65 0 2.77 CRYST1 51.050 64.318 161.007 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006211 0.00000