HEADER TRANSFERASE 27-MAR-20 6YGR TITLE TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 6- TITLE 2 AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS ZM4 = ATCC SOURCE 3 31821; SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TGT, TRNA-GUANINE TRANSGLYCOSYLASE, GUANINE INSERTION KEYWDS 2 ENZYME, HOMODIMER EXPDTA X-RAY DIFFRACTION AUTHOR A.NGUYEN,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6YGR 1 REMARK REVDAT 1 08-APR-20 6YGR 0 JRNL AUTH A.NGUYEN,A.HEINE,G.KLEBE JRNL TITL CO-CRYSTALLIZATION AND NANOESI-MS REVEAL DIMER DISTURBING JRNL TITL 2 INHIBITORS AND CONFORMATIONAL CHANGES AT DIMER CONTACTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 40699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8600 - 4.2000 0.97 2645 140 0.1672 0.1994 REMARK 3 2 4.2000 - 3.3400 0.98 2618 138 0.1599 0.2028 REMARK 3 3 3.3400 - 2.9100 0.99 2635 138 0.1837 0.2267 REMARK 3 4 2.9100 - 2.6500 0.96 2528 133 0.1874 0.2138 REMARK 3 5 2.6500 - 2.4600 0.98 2620 138 0.1835 0.2021 REMARK 3 6 2.4600 - 2.3100 0.99 2599 137 0.1747 0.2235 REMARK 3 7 2.3100 - 2.2000 0.99 2620 138 0.1790 0.2155 REMARK 3 8 2.2000 - 2.1000 0.99 2598 137 0.1786 0.2073 REMARK 3 9 2.1000 - 2.0200 0.99 2629 138 0.1859 0.2445 REMARK 3 10 2.0200 - 1.9500 1.00 2609 137 0.1885 0.2084 REMARK 3 11 1.9500 - 1.8900 0.96 2518 133 0.2072 0.2629 REMARK 3 12 1.8900 - 1.8400 0.98 2570 135 0.2255 0.2989 REMARK 3 13 1.8400 - 1.7900 0.98 2618 138 0.2329 0.2899 REMARK 3 14 1.7900 - 1.7400 0.99 2590 136 0.2529 0.3168 REMARK 3 15 1.7400 - 1.7000 0.86 2266 120 0.2821 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.224 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2785 REMARK 3 ANGLE : 0.780 3770 REMARK 3 CHIRALITY : 0.049 397 REMARK 3 PLANARITY : 0.005 530 REMARK 3 DIHEDRAL : 16.453 1672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.9144 2.7775 20.0933 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1292 REMARK 3 T33: 0.1737 T12: 0.0136 REMARK 3 T13: -0.0179 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5717 L22: 0.3490 REMARK 3 L33: 0.9160 L12: -0.2588 REMARK 3 L13: 0.0234 L23: 0.2680 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.1165 S13: -0.0093 REMARK 3 S21: -0.0178 S22: -0.0259 S23: 0.0097 REMARK 3 S31: -0.0079 S32: -0.0650 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.1178 15.7435 25.6574 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1891 REMARK 3 T33: 0.1734 T12: 0.0333 REMARK 3 T13: -0.0231 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.6660 L22: 0.1681 REMARK 3 L33: 0.6902 L12: -0.1378 REMARK 3 L13: 0.6100 L23: -0.1316 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.0488 S13: 0.0587 REMARK 3 S21: -0.1488 S22: 0.0047 S23: -0.0948 REMARK 3 S31: -0.3505 S32: -0.1890 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.9132 12.9029 27.1378 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1316 REMARK 3 T33: 0.1462 T12: 0.0059 REMARK 3 T13: -0.0182 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9549 L22: 1.2210 REMARK 3 L33: 1.0120 L12: 0.0386 REMARK 3 L13: -0.2503 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.1137 S13: 0.0252 REMARK 3 S21: 0.0281 S22: 0.0273 S23: -0.1171 REMARK 3 S31: -0.1299 S32: 0.1068 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.7265 12.2415 1.7288 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.1999 REMARK 3 T33: 0.1899 T12: 0.0040 REMARK 3 T13: -0.0223 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: -0.1686 L22: -0.0832 REMARK 3 L33: 0.1781 L12: -0.0272 REMARK 3 L13: 0.1428 L23: -0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.0429 S13: 0.0834 REMARK 3 S21: 0.0446 S22: 0.0788 S23: -0.0033 REMARK 3 S31: -0.2759 S32: -0.1829 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.2352 8.4128 -10.1257 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.1809 REMARK 3 T33: 0.2256 T12: 0.0090 REMARK 3 T13: -0.0689 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6068 L22: 0.2168 REMARK 3 L33: 0.4396 L12: 0.1939 REMARK 3 L13: -0.0355 L23: 0.1616 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.1267 S13: 0.0049 REMARK 3 S21: 0.0430 S22: 0.1301 S23: -0.2630 REMARK 3 S31: 0.2795 S32: 0.3197 S33: 0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.4854 3.1793 4.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1991 REMARK 3 T33: 0.1439 T12: 0.0289 REMARK 3 T13: 0.0207 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2393 L22: 0.1923 REMARK 3 L33: 0.4095 L12: 0.0158 REMARK 3 L13: 0.2280 L23: -0.2318 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.1975 S13: -0.0662 REMARK 3 S21: -0.1984 S22: -0.0332 S23: -0.0344 REMARK 3 S31: 0.1079 S32: 0.0655 S33: 0.0427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 5.5, 0.5 MM DTT, 10% REMARK 280 (V/V) DMSO, 13% (M/V) PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.96050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.51100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.96050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.51100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 167.84200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 52 REMARK 465 ALA A 53 REMARK 465 LEU A 54 REMARK 465 LYS A 55 REMARK 465 PRO A 56 REMARK 465 GLU A 57 REMARK 465 THR A 58 REMARK 465 VAL A 59 REMARK 465 ARG A 60 REMARK 465 ALA A 61 REMARK 465 THR A 62 REMARK 465 SER A 110 REMARK 465 LEU A 111 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 GLN A 324 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 NZ REMARK 470 THR A 50 OG1 CG2 REMARK 470 VAL A 51 CG1 CG2 REMARK 470 HIS A 73 ND1 CD2 CE1 NE2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 82 NE CZ NH1 NH2 REMARK 470 LYS A 85 CE NZ REMARK 470 ARG A 97 CZ NH1 NH2 REMARK 470 MET A 109 CG SD CE REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 128 CD1 CD2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 220 OE1 OE2 REMARK 470 LYS A 255 NZ REMARK 470 LYS A 264 CE NZ REMARK 470 VAL A 282 CG1 CG2 REMARK 470 LEU A 283 CD1 CD2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 290 OD1 ND2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 470 LYS A 312 NZ REMARK 470 SER A 316 OG REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 HIS A 319 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 322 CG1 CG2 REMARK 470 LYS A 325 CD CE NZ REMARK 470 ILE A 331 CD1 REMARK 470 ILE A 340 CG1 CD1 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 ILE A 351 CD1 REMARK 470 LYS A 360 NZ REMARK 470 ARG A 369 CZ NH1 NH2 REMARK 470 SER A 371 OG REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 129 12.42 -147.14 REMARK 500 GLN A 203 -161.65 -123.74 REMARK 500 SER A 205 -135.84 54.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 107.4 REMARK 620 3 CYS A 323 SG 108.7 122.0 REMARK 620 4 HIS A 349 ND1 109.7 109.1 99.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NE8 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I07 RELATED DB: PDB DBREF 6YGR A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 6YGR GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 6YGR SER A 0 UNP P28720 EXPRESSION TAG SEQADV 6YGR LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET NE8 A 402 23 HETNAM ZN ZINC ION HETNAM NE8 6-AMINO-4-(2-PHENYLETHYL)-1,7-DIHYDRO-8H-IMIDAZO[4,5- HETNAM 2 NE8 G]QUINAZOLIN-8-ONE FORMUL 2 ZN ZN 2+ FORMUL 3 NE8 C17 H15 N5 O FORMUL 4 HOH *215(H2 O) HELIX 1 AA1 ASN A 70 ARG A 77 1 8 HELIX 2 AA2 GLY A 79 LEU A 86 1 8 HELIX 3 AA3 GLY A 88 GLY A 94 1 7 HELIX 4 AA4 GLY A 104 MET A 109 1 6 HELIX 5 AA5 SER A 136 GLY A 148 1 13 HELIX 6 AA6 THR A 164 SER A 188 1 25 HELIX 7 AA7 ARG A 189 ALA A 196 1 8 HELIX 8 AA8 PHE A 207 GLY A 222 1 16 HELIX 9 AA9 GLY A 236 VAL A 248 1 13 HELIX 10 AB1 PRO A 249 LEU A 251 5 3 HELIX 11 AB2 LYS A 264 GLU A 273 1 10 HELIX 12 AB3 VAL A 282 ASN A 290 1 9 HELIX 13 AB4 ASN A 304 SER A 308 5 5 HELIX 14 AB5 SER A 327 ALA A 337 1 11 HELIX 15 AB6 GLU A 339 GLU A 367 1 29 HELIX 16 AB7 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PHE A 42 0 SHEET 2 AA2 8 MET A 278 PHE A 279 1 O PHE A 279 N ALA A 41 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N ILE A 67 O LEU A 100 SHEET 1 AA3 3 LYS A 116 GLN A 117 0 SHEET 2 AA3 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 AA3 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 THR A 295 0 SHEET 2 AA4 2 GLY A 298 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.25 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.36 CISPEP 1 THR A 39 PRO A 40 0 0.67 CISPEP 2 ARG A 77 PRO A 78 0 2.73 CISPEP 3 TYR A 161 PRO A 162 0 -0.11 CISPEP 4 VAL A 262 GLY A 263 0 0.78 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 15 ASP A 102 SER A 103 TYR A 106 ASP A 156 SITE 2 AC2 15 CYS A 158 ILE A 201 GLN A 203 GLY A 229 SITE 3 AC2 15 GLY A 230 LEU A 231 ALA A 232 TYR A 258 SITE 4 AC2 15 MET A 260 GLY A 261 HOH A 560 CRYST1 83.921 65.022 71.104 90.00 93.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011916 0.000000 0.000821 0.00000 SCALE2 0.000000 0.015379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014097 0.00000