HEADER TOXIN 30-MAR-20 6YHM TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF CNFY FROM YERSINIA TITLE 2 PSEUDOTUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXIC NECROTIZING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 719 - 1014; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINAL DOMAIN OF CNFY FROM YERSINIA COMPND 7 PSEUDOTUBERCULOSIS (RESIDUES 720-1014) RESIDUES 716-719 ARE OVERHANGS COMPND 8 FROM DIGESTION OF THE EXPRESSION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: CNF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS TOXIN, CNF, CYTOTOXIC NECROTIZING FACTOR, DEAMIDASE, RHOA KEYWDS 2 MODIFICATION, RHOA ACTIVATION, PUTATIVE ADP-RIBOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LUKAT,E.M.GAZDAG,T.V.HEIDLER,W.BLANKENFELDT REVDAT 4 24-JAN-24 6YHM 1 REMARK REVDAT 3 24-FEB-21 6YHM 1 JRNL REVDAT 2 20-JAN-21 6YHM 1 JRNL REVDAT 1 30-DEC-20 6YHM 0 JRNL AUTH P.CHAOPRASID,P.LUKAT,S.MUHLEN,T.HEIDLER,E.M.GAZDAG,S.DONG, JRNL AUTH 2 W.BI,C.RUTER,M.KIRCHENWITZ,A.STEFFEN,L.JANSCH,T.E.B.STRADAL, JRNL AUTH 3 P.DERSCH,W.BLANKENFELDT JRNL TITL CRYSTAL STRUCTURE OF BACTERIAL CYTOTOXIC NECROTIZING FACTOR JRNL TITL 2 CNF Y REVEALS MOLECULAR BUILDING BLOCKS FOR INTOXICATION. JRNL REF EMBO J. V. 40 05202 2021 JRNL REFN ESSN 1460-2075 JRNL PMID 33410511 JRNL DOI 10.15252/EMBJ.2020105202 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC4_3812 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 100643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 5090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9700 - 3.5200 0.72 2485 147 0.1732 0.1944 REMARK 3 2 3.5200 - 2.8000 0.94 3167 157 0.1548 0.1763 REMARK 3 3 2.8000 - 2.4400 0.91 3087 165 0.1474 0.1830 REMARK 3 4 2.4400 - 2.2200 0.84 2849 144 0.1507 0.1737 REMARK 3 5 2.2200 - 2.0600 0.88 2942 167 0.1483 0.1505 REMARK 3 6 2.0600 - 1.9400 0.99 3300 164 0.1507 0.1542 REMARK 3 7 1.9400 - 1.8400 0.73 2423 143 0.1559 0.1862 REMARK 3 8 1.8400 - 1.7600 0.99 3324 172 0.1555 0.1802 REMARK 3 9 1.7600 - 1.7000 0.99 3309 162 0.1528 0.1551 REMARK 3 10 1.7000 - 1.6400 0.99 3349 170 0.1504 0.1460 REMARK 3 11 1.6400 - 1.5900 0.99 3328 170 0.1544 0.1703 REMARK 3 12 1.5900 - 1.5400 0.99 3275 195 0.1613 0.1875 REMARK 3 13 1.5400 - 1.5000 0.68 2274 115 0.1687 0.1817 REMARK 3 14 1.5000 - 1.4600 0.99 3309 179 0.1723 0.2049 REMARK 3 15 1.4600 - 1.4300 1.00 3304 183 0.1823 0.1969 REMARK 3 16 1.4300 - 1.4000 1.00 3310 180 0.1853 0.1922 REMARK 3 17 1.4000 - 1.3700 1.00 3412 157 0.1875 0.2146 REMARK 3 18 1.3700 - 1.3500 1.00 3302 191 0.1899 0.1770 REMARK 3 19 1.3500 - 1.3200 1.00 3315 176 0.1936 0.1922 REMARK 3 20 1.3200 - 1.3000 1.00 3313 190 0.1963 0.2446 REMARK 3 21 1.3000 - 1.2800 1.00 3305 178 0.1980 0.2261 REMARK 3 22 1.2800 - 1.2600 0.99 3315 171 0.2074 0.2092 REMARK 3 23 1.2600 - 1.2400 1.00 3332 202 0.2151 0.2162 REMARK 3 24 1.2400 - 1.2200 1.00 3285 166 0.2158 0.2272 REMARK 3 25 1.2200 - 1.2100 1.00 3322 186 0.2206 0.2463 REMARK 3 26 1.2100 - 1.1900 1.00 3336 177 0.2311 0.2337 REMARK 3 27 1.1900 - 1.1800 1.00 3335 182 0.2369 0.2555 REMARK 3 28 1.1800 - 1.1600 1.00 3331 152 0.2445 0.2691 REMARK 3 29 1.1600 - 1.1500 1.00 3281 165 0.2396 0.2703 REMARK 3 30 1.1500 - 1.1300 1.00 3334 184 0.2557 0.2547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.104 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2481 REMARK 3 ANGLE : 0.928 3395 REMARK 3 CHIRALITY : 0.080 391 REMARK 3 PLANARITY : 0.006 445 REMARK 3 DIHEDRAL : 15.078 936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 719 THROUGH 750 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6748 4.4904 3.5538 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.1367 REMARK 3 T33: 0.1203 T12: 0.0018 REMARK 3 T13: -0.0325 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.7037 L22: 2.2336 REMARK 3 L33: 2.4296 L12: -0.0737 REMARK 3 L13: 0.4519 L23: 0.8670 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.1097 S13: 0.0079 REMARK 3 S21: -0.1842 S22: -0.0405 S23: 0.2633 REMARK 3 S31: 0.0195 S32: -0.1936 S33: 0.0613 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 751 THROUGH 774 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0354 -3.8089 27.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.1035 REMARK 3 T33: 0.1503 T12: 0.0154 REMARK 3 T13: 0.0522 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.6398 L22: 1.5322 REMARK 3 L33: 2.2168 L12: -0.1002 REMARK 3 L13: 0.2194 L23: 0.9114 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.0799 S13: -0.0769 REMARK 3 S21: 0.4113 S22: 0.0285 S23: 0.0433 REMARK 3 S31: 0.4642 S32: -0.1046 S33: -0.0835 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 775 THROUGH 799 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4135 -2.6365 27.7544 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1338 REMARK 3 T33: 0.1889 T12: -0.0456 REMARK 3 T13: 0.0655 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.2288 L22: 1.4794 REMARK 3 L33: 1.7806 L12: -0.7619 REMARK 3 L13: 0.1418 L23: 0.3623 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.0786 S13: -0.0697 REMARK 3 S21: -0.3242 S22: -0.0427 S23: 0.1830 REMARK 3 S31: 0.3043 S32: -0.3388 S33: 0.0604 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 800 THROUGH 859 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1002 1.0443 13.7153 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0990 REMARK 3 T33: 0.1198 T12: -0.0069 REMARK 3 T13: 0.0204 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.5916 L22: 0.7916 REMARK 3 L33: 1.9091 L12: 0.1238 REMARK 3 L13: 0.6106 L23: 0.2821 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0327 S13: -0.0214 REMARK 3 S21: 0.0855 S22: -0.0290 S23: 0.1620 REMARK 3 S31: 0.1632 S32: -0.1376 S33: 0.0422 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 860 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8448 7.3928 26.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.1221 REMARK 3 T33: 0.0931 T12: 0.0375 REMARK 3 T13: -0.0038 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0270 L22: 1.6066 REMARK 3 L33: 1.5123 L12: 0.0458 REMARK 3 L13: -0.2176 L23: 0.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.1060 S13: 0.0054 REMARK 3 S21: 0.2974 S22: 0.0287 S23: -0.0458 REMARK 3 S31: 0.1557 S32: 0.2357 S33: 0.0153 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 921 THROUGH 956 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.1714 15.1937 22.8980 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1604 REMARK 3 T33: 0.1226 T12: -0.0009 REMARK 3 T13: -0.0198 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0441 L22: 1.1090 REMARK 3 L33: 1.3092 L12: -0.2752 REMARK 3 L13: -0.0680 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0871 S13: 0.0950 REMARK 3 S21: 0.1178 S22: 0.0836 S23: -0.1620 REMARK 3 S31: -0.0954 S32: 0.3351 S33: -0.0296 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 957 THROUGH 1014 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6158 13.7151 11.2183 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.1188 REMARK 3 T33: 0.0851 T12: 0.0100 REMARK 3 T13: -0.0110 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.6768 L22: 1.6146 REMARK 3 L33: 1.8716 L12: 0.2065 REMARK 3 L13: 0.1641 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.1227 S13: 0.1301 REMARK 3 S21: -0.0297 S22: -0.0178 S23: 0.0455 REMARK 3 S31: -0.1468 S32: -0.0238 S33: 0.0264 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100708 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 68.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HQ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, 20 % (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.08000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 716 REMARK 465 SER A 717 REMARK 465 HIS A 718 REMARK 465 SER A 999 REMARK 465 ASN A 1000 REMARK 465 SER A 1001 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 795 36.78 -150.92 REMARK 500 THR A 817 -91.57 -131.19 REMARK 500 THR A 825 162.91 67.06 REMARK 500 THR A 894 -83.13 -127.25 REMARK 500 ALA A 914 97.72 -68.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1101 DBREF1 6YHM A 720 1014 UNP A0A0N9JNY6_YERPU DBREF2 6YHM A A0A0N9JNY6 720 1014 SEQADV 6YHM GLY A 716 UNP A0A0N9JNY EXPRESSION TAG SEQADV 6YHM SER A 717 UNP A0A0N9JNY EXPRESSION TAG SEQADV 6YHM HIS A 718 UNP A0A0N9JNY EXPRESSION TAG SEQADV 6YHM MET A 719 UNP A0A0N9JNY EXPRESSION TAG SEQRES 1 A 299 GLY SER HIS MET ASN VAL ALA GLU ILE SER SER ILE ASN SEQRES 2 A 299 PHE ARG ARG LEU ASN SER GLY ASN ILE ASN VAL LEU LYS SEQRES 3 A 299 GLY ARG GLY VAL PHE SER SER ARG ARG LEU ARG GLU ILE SEQRES 4 A 299 TYR LEU ARG PHE ASP ALA ALA ASN ALA ASP GLU LEU ARG SEQRES 5 A 299 PRO GLY ASP VAL TYR VAL LYS LYS THR LYS PHE ASP SER SEQRES 6 A 299 MET GLY TYR ASP SER HIS PHE TYR ASN GLU GLY ILE GLY SEQRES 7 A 299 ILE ASN GLY ALA PRO THR LEU ASN THR TYR THR GLY GLU SEQRES 8 A 299 TYR VAL ALA ASP SER SER SER GLN GLY ALA THR TYR TRP SEQRES 9 A 299 LEU LYS TYR ASN LEU THR ASN GLU THR SER ILE ILE LYS SEQRES 10 A 299 VAL SER ASN SER ALA ARG GLY ALA ASN GLY ILE LYS ILE SEQRES 11 A 299 ALA LEU GLU GLU ILE GLU GLU ASN LYS PRO VAL VAL ILE SEQRES 12 A 299 THR SER GLY THR LEU THR GLY CYS THR VAL VAL PHE ALA SEQRES 13 A 299 ARG LYS GLY GLU TYR PHE TYR ALA VAL HIS THR GLY ASN SEQRES 14 A 299 SER GLU SER LEU ILE GLY PHE THR SER THR SER GLY VAL SEQRES 15 A 299 ALA LYS ALA ILE GLU VAL LEU SER SER LEU SER GLU LEU SEQRES 16 A 299 GLU VAL PRO ALA LEU PRO ASP VAL ILE ASN ASN ASN THR SEQRES 17 A 299 LEU VAL GLU TYR LEU SER ASP ASN PHE ASP SER ALA LEU SEQRES 18 A 299 ILE SER TYR SER SER SER SER LEU LYS PRO ASN SER MET SEQRES 19 A 299 ILE ASN ILE SER ARG GLU ASN VAL SER THR PHE SER TYR SEQRES 20 A 299 TYR THR ASP ASP ILE GLN LEU PRO SER PHE GLY THR SER SEQRES 21 A 299 VAL THR ILE LEU VAL ARG THR ASN ASP ASN THR VAL VAL SEQRES 22 A 299 ARG SER LEU SER GLU SER TYR THR MET ASN SER ASN SER SEQRES 23 A 299 SER LYS MET VAL VAL PHE ASN VAL LEU GLN LYS ASP PHE HET MG A1101 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *340(H2 O) HELIX 1 AA1 ASN A 720 SER A 734 1 15 HELIX 2 AA2 GLY A 735 LYS A 741 5 7 HELIX 3 AA3 ASP A 784 HIS A 786 5 3 HELIX 4 AA4 THR A 817 TYR A 822 1 6 HELIX 5 AA5 GLU A 848 ILE A 850 5 3 HELIX 6 AA6 THR A 894 GLU A 909 1 16 HELIX 7 AA7 ASN A 920 PHE A 932 1 13 HELIX 8 AA8 LYS A 945 MET A 949 5 5 SHEET 1 AA1 7 TYR A 772 LYS A 774 0 SHEET 2 AA1 7 ASP A 759 ASP A 764 -1 N ALA A 760 O LYS A 774 SHEET 3 AA1 7 ARG A 838 ALA A 846 -1 O ALA A 840 N ALA A 763 SHEET 4 AA1 7 TYR A 876 ASN A 884 -1 O PHE A 877 N ILE A 845 SHEET 5 AA1 7 THR A 867 LYS A 873 -1 N VAL A 869 O VAL A 880 SHEET 6 AA1 7 SER A 934 SER A 940 -1 O LEU A 936 N PHE A 870 SHEET 7 AA1 7 VAL A 957 TYR A 963 1 O SER A 958 N ALA A 935 SHEET 1 AA2 2 TYR A 788 ASN A 789 0 SHEET 2 AA2 2 ALA A 797 PRO A 798 -1 O ALA A 797 N ASN A 789 SHEET 1 AA3 6 LEU A 800 GLY A 805 0 SHEET 2 AA3 6 THR A 825 VAL A 833 -1 O ILE A 830 N TYR A 803 SHEET 3 AA3 6 VAL A 856 THR A 859 1 O VAL A 857 N ILE A 831 SHEET 4 AA3 6 PHE A 972 THR A 982 -1 O THR A 977 N ILE A 858 SHEET 5 AA3 6 ASN A 985 MET A 997 -1 O VAL A 987 N VAL A 980 SHEET 6 AA3 6 MET A1004 ASP A1013 -1 O VAL A1005 N THR A 996 LINK MG MG A1101 O HOH A1352 1555 1555 2.74 CISPEP 1 LEU A 969 PRO A 970 0 3.64 SITE 1 AC1 5 CYS A 866 GLY A 883 ASN A 884 THR A 892 SITE 2 AC1 5 HOH A1352 CRYST1 41.981 50.160 69.728 90.00 98.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023820 0.000000 0.003654 0.00000 SCALE2 0.000000 0.019936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014509 0.00000