HEADER PROTEIN BINDING 31-MAR-20 6YHZ TITLE UVRD HELICASE RNA POLYMERASE INTERACTIONS ARE GOVERNED BY UVRDS TITLE 2 CARBOXY TERMINAL TUDOR DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION-REPAIR-COUPLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRCF; COMPND 5 EC: 3.6.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MFD, ELT49_18965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BL21 STARTM (DE3) KEYWDS DNA-REPAIR, TUDOR, TCR, MFD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.A.KAWALE,B.B.BURMANN REVDAT 3 14-JUN-23 6YHZ 1 REMARK REVDAT 2 18-NOV-20 6YHZ 1 JRNL REVDAT 1 21-OCT-20 6YHZ 0 JRNL AUTH A.A.KAWALE,B.M.BURMANN JRNL TITL UVRD HELICASE-RNA POLYMERASE INTERACTIONS ARE GOVERNED BY JRNL TITL 2 UVRD'S CARBOXY-TERMINAL TUDOR DOMAIN. JRNL REF COMMUN BIOL V. 3 607 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 33097771 JRNL DOI 10.1038/S42003-020-01332-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107655. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 152 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-100% 13C; U-100% 15N] REMARK 210 MFD RID, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY; REMARK 210 3D HNCACB; 3D HNCO; 3D C(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 1.413, CYANA 3.98.12 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 474 -163.42 62.19 REMARK 500 1 ALA A 475 -56.41 69.86 REMARK 500 1 GLU A 476 32.24 -78.69 REMARK 500 1 TYR A 513 -163.65 -111.69 REMARK 500 2 GLU A 476 30.32 -86.99 REMARK 500 2 ALA A 533 -66.08 67.68 REMARK 500 3 ASN A 473 -41.83 -154.19 REMARK 500 3 LEU A 474 -157.24 59.64 REMARK 500 3 ALA A 475 -47.27 71.76 REMARK 500 3 GLU A 476 30.58 -89.22 REMARK 500 3 TYR A 513 -168.16 -108.65 REMARK 500 3 TYR A 532 -75.63 -52.02 REMARK 500 3 ALA A 533 -166.64 57.38 REMARK 500 3 LEU A 545 67.30 -100.11 REMARK 500 4 TYR A 513 -169.71 -112.76 REMARK 500 5 ASN A 473 -126.28 75.77 REMARK 500 5 LEU A 474 157.24 72.41 REMARK 500 5 ALA A 475 -63.12 69.84 REMARK 500 5 GLU A 476 31.64 -86.07 REMARK 500 5 TYR A 513 -162.73 -109.44 REMARK 500 5 ALA A 536 41.60 -143.89 REMARK 500 6 ALA A 536 28.75 -140.99 REMARK 500 7 ASN A 473 -21.12 -141.08 REMARK 500 7 LEU A 474 -148.00 54.73 REMARK 500 7 ALA A 475 -66.31 68.90 REMARK 500 7 GLU A 476 30.05 -82.60 REMARK 500 7 LEU A 545 60.90 -110.47 REMARK 500 8 LEU A 474 58.66 -99.99 REMARK 500 8 GLU A 476 31.53 -99.19 REMARK 500 8 TYR A 513 -166.59 -107.97 REMARK 500 8 ALA A 536 46.18 -86.09 REMARK 500 9 LEU A 474 -146.17 57.49 REMARK 500 9 ALA A 475 -49.63 72.25 REMARK 500 9 GLU A 476 31.24 -79.77 REMARK 500 9 TYR A 513 -161.83 -111.72 REMARK 500 10 TYR A 513 -167.34 -106.34 REMARK 500 10 TYR A 532 109.97 -55.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50219 RELATED DB: BMRB DBREF1 6YHZ A 472 547 UNP A0A5F0Q0Z8_ECOLX DBREF2 6YHZ A A0A5F0Q0Z8 472 547 SEQRES 1 A 76 ARG ASN LEU ALA GLU LEU HIS ILE GLY GLN PRO VAL VAL SEQRES 2 A 76 HIS LEU GLU HIS GLY VAL GLY ARG TYR ALA GLY MET THR SEQRES 3 A 76 THR LEU GLU ALA GLY GLY ILE THR GLY GLU TYR LEU MET SEQRES 4 A 76 LEU THR TYR ALA ASN ASP ALA LYS LEU TYR VAL PRO VAL SEQRES 5 A 76 SER SER LEU HIS LEU ILE SER ARG TYR ALA GLY GLY ALA SEQRES 6 A 76 GLU GLU ASN ALA PRO LEU HIS LYS LEU GLY GLY HELIX 1 AA1 ALA A 514 ASP A 516 5 3 HELIX 2 AA2 SER A 525 HIS A 527 5 3 HELIX 3 AA3 ALA A 536 ALA A 540 5 5 SHEET 1 AA1 5 LYS A 518 PRO A 522 0 SHEET 2 AA1 5 THR A 505 THR A 512 -1 N LEU A 509 O VAL A 521 SHEET 3 AA1 5 GLY A 489 GLU A 500 -1 N ARG A 492 O THR A 512 SHEET 4 AA1 5 PRO A 482 HIS A 485 -1 N VAL A 483 O GLY A 491 SHEET 5 AA1 5 ILE A 529 ARG A 531 -1 O SER A 530 N VAL A 484 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1